Wall clock time and date at job start Sun Mar 29 2020 22:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47279 * 2 1 4 4 S 1.81398 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.76208 * 103.00062 * 180.02562 * 4 3 2 6 6 C 1.39337 * 120.04460 * 180.02562 * 5 4 3 7 7 N 1.32023 * 120.07903 * 180.02562 * 6 5 4 8 8 C 1.32087 * 120.18874 * 359.97438 * 7 6 5 9 9 C 1.39214 * 120.08526 * 0.02562 * 8 7 6 10 10 N 1.38810 * 120.03984 * 179.97438 * 9 8 7 11 11 C 1.36895 * 120.00011 * 359.97438 * 10 9 8 12 12 H 1.08002 * 120.00320 * 0.02562 * 11 10 9 13 13 C 1.38817 * 119.99798 * 179.72356 * 11 10 9 14 14 N 1.31572 * 119.99783 * 180.27464 * 13 11 10 15 15 Si 1.86800 * 120.00209 * 0.27758 * 13 11 10 16 16 H 1.48498 * 109.47118 * 89.99559 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00079 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99700 * 15 13 11 19 19 N 1.32733 * 120.04066 * 0.27210 * 5 4 3 20 20 H 1.08999 * 109.46941 * 299.99432 * 1 2 3 21 21 H 1.09001 * 109.47555 * 59.99428 * 1 2 3 22 22 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46941 * 240.00568 * 2 1 3 24 24 H 1.09001 * 109.47555 * 120.00572 * 2 1 3 25 25 H 1.09005 * 109.47023 * 60.00124 * 3 2 1 26 26 H 1.09000 * 109.47654 * 300.00340 * 3 2 1 27 27 H 1.07993 * 119.95855 * 0.04684 * 6 5 4 28 28 H 1.08000 * 119.96286 * 180.02562 * 8 7 6 29 29 H 0.97000 * 119.99686 * 179.97438 * 10 9 8 30 30 H 0.96996 * 119.99653 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8539 1.4424 -0.0008 5 6 4.2504 3.1593 0.0001 6 6 5.5826 3.5677 -0.0008 7 7 5.8804 4.8539 0.0004 8 6 4.9179 5.7585 0.0018 9 6 3.5844 5.3587 0.0027 10 7 2.5737 6.3102 0.0048 11 6 2.8879 7.6426 0.0065 12 1 3.9222 7.9535 0.0058 13 6 1.8771 8.5940 0.0028 14 7 2.1791 9.8746 -0.0010 15 14 0.0882 8.0563 0.0032 16 1 -0.3868 7.9182 1.4034 17 1 -0.7344 9.0728 -0.7006 18 1 -0.0364 6.7505 -0.6928 19 7 3.2803 4.0653 0.0065 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8932 -0.5137 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9564 -0.8899 27 1 6.3724 2.8312 -0.0027 28 1 5.1656 6.8097 0.0024 29 1 1.6447 6.0309 0.0050 30 1 1.4728 10.5394 -0.0033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534459.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:16 Heat of formation + Delta-G solvation = 35.789561 kcal Electronic energy + Delta-G solvation = -14231.069401 eV Core-core repulsion = 11766.205439 eV Total energy + Delta-G solvation = -2464.863962 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.82906 -35.90498 -34.73791 -33.19693 -32.27324 -29.19484 -27.32490 -25.13439 -23.89550 -22.39150 -21.34030 -18.81401 -17.41797 -16.37399 -15.84835 -15.58428 -15.42707 -14.79166 -14.16400 -14.10014 -13.55240 -13.46153 -12.66603 -12.54184 -12.13996 -11.81986 -11.61970 -11.33407 -11.00571 -10.95577 -10.82440 -10.60852 -10.37442 -10.28534 -10.22034 -9.26407 -8.25356 -7.96203 -6.97686 -6.76017 -4.08184 1.72863 1.80547 2.19787 2.54439 2.90097 2.91485 2.96160 3.78880 4.29145 4.44711 4.78176 4.85847 4.96063 5.16556 5.41041 5.43549 5.57650 5.59296 5.68281 5.74631 5.93393 5.98098 6.14417 6.24218 6.32814 7.06654 7.22799 7.54169 8.04858 8.26509 8.68180 8.91034 9.09931 10.33102 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.022100 B = 0.007209 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.640699 B = 3882.940408 C = 5123.829419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.092 4.092 4 S -0.098 6.098 5 C 0.140 3.860 6 C -0.073 4.073 7 N -0.391 5.391 8 C -0.027 4.027 9 C 0.329 3.671 10 N -0.540 5.540 11 C -0.308 4.308 12 H 0.126 0.874 13 C 0.050 3.950 14 N -0.856 5.856 15 Si 0.883 3.117 16 H -0.265 1.265 17 H -0.270 1.270 18 H -0.265 1.265 19 N -0.549 5.549 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.148 0.852 28 H 0.163 0.837 29 H 0.384 0.616 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.179 -13.852 0.004 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.241 4.241 4 S 0.140 5.860 5 C -0.116 4.116 6 C -0.239 4.239 7 N -0.104 5.104 8 C -0.204 4.204 9 C 0.081 3.919 10 N -0.148 5.148 11 C -0.438 4.438 12 H 0.143 0.857 13 C -0.158 4.158 14 N -0.490 5.490 15 Si 0.709 3.291 16 H -0.190 1.190 17 H -0.195 1.195 18 H -0.190 1.190 19 N -0.279 5.279 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.165 0.835 28 H 0.180 0.820 29 H 0.219 0.781 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.619 -14.247 0.009 14.486 hybrid contribution -2.206 1.063 -0.019 2.449 sum -4.825 -13.184 -0.011 14.039 Atomic orbital electron populations 1.21746 0.94749 1.01761 1.02320 1.21307 0.96250 0.94322 1.02962 1.23426 0.93702 1.00409 1.06587 1.85130 1.07244 1.01217 1.92451 1.23350 0.93135 0.96863 0.98256 1.22258 0.93285 0.93211 1.15183 1.68007 1.35577 1.01221 1.05555 1.22793 0.87635 0.99886 1.10091 1.18913 0.89248 0.86696 0.97075 1.41032 1.05312 1.04375 1.64115 1.19500 0.97393 0.78176 1.48713 0.85671 1.25037 0.99346 0.94939 0.96483 1.69663 1.34623 0.99764 1.44911 0.86553 0.83738 0.79285 0.79567 1.19013 1.19494 1.19001 1.68020 1.34297 1.00405 1.25213 0.92442 0.92451 0.92332 0.91186 0.91179 0.89324 0.89349 0.83500 0.81967 0.78111 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.15 0.37 -0.96 16 2 C -0.11 -1.13 5.94 -26.74 -0.16 -1.29 16 3 C -0.09 -1.26 5.22 37.16 0.19 -1.07 16 4 S -0.10 -1.51 21.92 -107.50 -2.36 -3.87 16 5 C 0.14 2.76 7.00 -16.75 -0.12 2.64 16 6 C -0.07 -1.44 10.98 -17.06 -0.19 -1.63 16 7 N -0.39 -8.46 10.48 -12.64 -0.13 -8.59 16 8 C -0.03 -0.61 10.48 -17.08 -0.18 -0.79 16 9 C 0.33 7.53 7.63 -154.78 -1.18 6.35 16 10 N -0.54 -12.51 5.24 -11.08 -0.06 -12.57 16 11 C -0.31 -7.69 10.03 -15.08 -0.15 -7.84 16 12 H 0.13 3.25 5.89 -52.49 -0.31 2.94 16 13 C 0.05 1.24 5.50 -17.45 -0.10 1.14 16 14 N -0.86 -22.42 13.97 55.49 0.77 -21.64 16 15 Si 0.88 18.42 27.74 -169.99 -4.72 13.71 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 17 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.26 -5.33 6.51 56.52 0.37 -4.97 16 19 N -0.55 -11.80 9.63 -11.08 -0.11 -11.90 16 20 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 26 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 27 H 0.15 2.51 8.06 -52.49 -0.42 2.08 16 28 H 0.16 3.60 5.94 -52.49 -0.31 3.29 16 29 H 0.38 8.48 5.87 -40.82 -0.24 8.24 16 30 H 0.28 6.84 8.31 -40.82 -0.34 6.51 16 LS Contribution 273.47 15.07 4.12 4.12 Total: -1.00 -26.47 273.47 -7.39 -33.86 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -3.41 Total: 10.34 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.51 Total: -3.45 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.48 Total: -54.71 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.72 Total: 13.71 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.36 Total: -3.87 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -26.47 -7.39 -33.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534459.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.648 kcal (2) G-P(sol) polarization free energy of solvation -26.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds