Wall clock time and date at job start Sun Mar 29 2020 22:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47279 * 2 1 4 4 S 1.81398 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.76208 * 103.00062 * 180.02562 * 4 3 2 6 6 C 1.39337 * 120.04460 * 180.02562 * 5 4 3 7 7 N 1.32023 * 120.07903 * 180.02562 * 6 5 4 8 8 C 1.32087 * 120.18874 * 359.97438 * 7 6 5 9 9 C 1.39214 * 120.08526 * 0.02562 * 8 7 6 10 10 N 1.38810 * 120.03984 * 179.97438 * 9 8 7 11 11 C 1.36895 * 120.00011 * 359.97438 * 10 9 8 12 12 H 1.08002 * 120.00320 * 0.02562 * 11 10 9 13 13 C 1.38817 * 119.99798 * 179.72356 * 11 10 9 14 14 N 1.31572 * 119.99783 * 180.27464 * 13 11 10 15 15 Si 1.86800 * 120.00209 * 0.27758 * 13 11 10 16 16 H 1.48498 * 109.47118 * 89.99559 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00079 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99700 * 15 13 11 19 19 N 1.32733 * 120.04066 * 0.27210 * 5 4 3 20 20 H 1.08999 * 109.46941 * 299.99432 * 1 2 3 21 21 H 1.09001 * 109.47555 * 59.99428 * 1 2 3 22 22 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46941 * 240.00568 * 2 1 3 24 24 H 1.09001 * 109.47555 * 120.00572 * 2 1 3 25 25 H 1.09005 * 109.47023 * 60.00124 * 3 2 1 26 26 H 1.09000 * 109.47654 * 300.00340 * 3 2 1 27 27 H 1.07993 * 119.95855 * 0.04684 * 6 5 4 28 28 H 1.08000 * 119.96286 * 180.02562 * 8 7 6 29 29 H 0.97000 * 119.99686 * 179.97438 * 10 9 8 30 30 H 0.96996 * 119.99653 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8539 1.4424 -0.0008 5 6 4.2504 3.1593 0.0001 6 6 5.5826 3.5677 -0.0008 7 7 5.8804 4.8539 0.0004 8 6 4.9179 5.7585 0.0018 9 6 3.5844 5.3587 0.0027 10 7 2.5737 6.3102 0.0048 11 6 2.8879 7.6426 0.0065 12 1 3.9222 7.9535 0.0058 13 6 1.8771 8.5940 0.0028 14 7 2.1791 9.8746 -0.0010 15 14 0.0882 8.0563 0.0032 16 1 -0.3868 7.9182 1.4034 17 1 -0.7344 9.0728 -0.7006 18 1 -0.0364 6.7505 -0.6928 19 7 3.2803 4.0653 0.0065 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8932 -0.5137 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9564 -0.8899 27 1 6.3724 2.8312 -0.0027 28 1 5.1656 6.8097 0.0024 29 1 1.6447 6.0309 0.0050 30 1 1.4728 10.5394 -0.0033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534459.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:15 Heat of formation + Delta-G solvation = 20.227814 kcal Electronic energy + Delta-G solvation = -14231.744209 eV Core-core repulsion = 11766.205439 eV Total energy + Delta-G solvation = -2465.538770 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.54634 -37.67301 -35.62661 -34.92074 -34.07816 -30.92145 -28.25915 -26.93484 -25.60693 -23.94434 -22.39127 -20.63057 -19.02990 -18.09804 -17.41328 -17.16598 -16.44539 -16.39940 -15.80618 -15.47032 -15.19222 -14.42467 -14.33123 -13.69734 -13.68985 -13.46613 -12.69094 -12.65883 -12.50657 -12.41606 -12.10259 -12.09289 -12.05897 -11.69731 -11.43741 -11.04917 -9.94876 -9.59220 -8.60729 -8.44018 -6.00611 0.04255 0.44785 0.48164 1.23223 1.24945 1.28273 1.32488 2.07069 2.55736 2.67747 3.14431 3.74038 3.84647 3.91552 3.94221 4.03703 4.37516 4.53897 4.53923 4.66615 4.73868 4.88088 5.12758 5.18869 5.26356 5.37925 5.48868 5.69942 6.30225 6.42910 6.94058 7.07390 7.32329 8.52138 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.022100 B = 0.007209 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.640699 B = 3882.940408 C = 5123.829419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C -0.095 4.095 4 S -0.049 6.049 5 C 0.123 3.877 6 C -0.063 4.063 7 N -0.400 5.400 8 C -0.054 4.054 9 C 0.327 3.673 10 N -0.551 5.551 11 C -0.319 4.319 12 H 0.099 0.901 13 C 0.004 3.996 14 N -0.904 5.904 15 Si 0.946 3.054 16 H -0.260 1.260 17 H -0.266 1.266 18 H -0.253 1.253 19 N -0.549 5.549 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.181 0.819 28 H 0.153 0.847 29 H 0.388 0.612 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.089 -17.166 -0.010 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.142 4.142 3 C -0.244 4.244 4 S 0.190 5.810 5 C -0.133 4.133 6 C -0.231 4.231 7 N -0.113 5.113 8 C -0.228 4.228 9 C 0.080 3.920 10 N -0.163 5.163 11 C -0.448 4.448 12 H 0.117 0.883 13 C -0.199 4.199 14 N -0.540 5.540 15 Si 0.768 3.232 16 H -0.184 1.184 17 H -0.190 1.190 18 H -0.178 1.178 19 N -0.280 5.280 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.096 0.904 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.198 0.802 28 H 0.170 0.830 29 H 0.224 0.776 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.504 -17.572 -0.006 17.918 hybrid contribution -1.726 1.719 -0.013 2.436 sum -5.230 -15.854 -0.019 16.694 Atomic orbital electron populations 1.21746 0.93607 1.02970 1.02108 1.21325 0.97104 0.91905 1.03902 1.23615 0.92384 1.02688 1.05751 1.85001 1.08623 0.96217 1.91170 1.24134 0.93223 0.99301 0.96641 1.22943 0.94572 0.93117 1.12458 1.68006 1.35579 1.02091 1.05576 1.22697 0.88041 0.99916 1.12120 1.19100 0.89334 0.87426 0.96111 1.40793 1.05457 1.03623 1.66379 1.19329 0.96602 0.79322 1.49583 0.88287 1.25742 1.03429 0.94692 0.96034 1.69765 1.36045 1.00913 1.47265 0.85584 0.78411 0.79333 0.79838 1.18412 1.19016 1.17767 1.68152 1.34980 0.99944 1.24914 0.92681 0.92716 0.90421 0.90231 0.90208 0.90176 0.90245 0.80204 0.82962 0.77600 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.44 16 2 C -0.10 -1.76 5.94 30.59 0.18 -1.58 16 3 C -0.10 -2.33 5.22 71.98 0.38 -1.95 16 4 S -0.05 -1.33 21.92 -56.49 -1.24 -2.57 16 5 C 0.12 4.57 7.00 84.82 0.59 5.16 16 6 C -0.06 -2.35 10.98 84.93 0.93 -1.41 16 7 N -0.40 -17.06 10.48 -193.90 -2.03 -19.09 16 8 C -0.05 -2.47 10.48 84.89 0.89 -1.58 16 9 C 0.33 15.04 7.63 133.01 1.01 16.06 16 10 N -0.55 -25.91 5.24 -188.98 -0.99 -26.90 16 11 C -0.32 -16.54 10.03 84.04 0.84 -15.70 16 12 H 0.10 5.51 5.89 -2.91 -0.02 5.49 16 13 C 0.00 0.22 5.50 84.87 0.47 0.69 16 14 N -0.90 -49.14 13.97 21.65 0.30 -48.84 16 15 Si 0.95 38.15 27.74 68.60 1.90 40.05 16 16 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 17 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 18 H -0.25 -9.59 6.51 99.48 0.65 -8.94 16 19 N -0.55 -22.94 9.63 -188.98 -1.82 -24.76 16 20 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 21 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 23 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.18 5.46 8.06 -2.91 -0.02 5.44 16 28 H 0.15 7.20 5.94 -2.91 -0.02 7.18 16 29 H 0.39 17.05 5.87 -92.71 -0.54 16.51 16 30 H 0.29 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -57.30 273.47 2.69 -54.61 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.55 Total: 29.27 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 6.01 Total: -1.77 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -4.54 Total: -119.59 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.90 Total: 40.05 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -1.24 Total: -2.57 kcal Total: -57.30 2.69 -54.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534459.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.837 kcal (2) G-P(sol) polarization free energy of solvation -57.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds