Wall clock time and date at job start Sun Mar 29 2020 22:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.38838 * 121.34545 * 219.69709 * 3 2 1 5 5 C 1.40033 * 119.42730 * 180.02562 * 4 3 2 6 6 N 1.38579 * 118.83302 * 180.02562 * 5 4 3 7 7 C 1.36803 * 119.99464 * 354.17483 * 6 5 4 8 8 H 1.08004 * 120.00262 * 5.13689 * 7 6 5 9 9 C 1.38905 * 120.00002 * 185.13719 * 7 6 5 10 10 N 1.31499 * 119.99938 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00216 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47052 * 89.99759 * 11 9 7 13 13 H 1.48495 * 109.47071 * 209.99861 * 11 9 7 14 14 H 1.48500 * 109.46858 * 329.99529 * 11 9 7 15 15 N 1.31633 * 122.34105 * 0.02562 * 5 4 3 16 16 C 1.33576 * 122.32636 * 359.96057 * 15 5 4 17 17 C 1.40644 * 121.07987 * 180.02562 * 16 15 5 18 18 C 1.36151 * 119.72245 * 180.02562 * 17 16 15 19 19 C 1.39260 * 121.07062 * 0.02562 * 18 17 16 20 20 C 1.36403 * 120.79626 * 359.97438 * 19 18 17 21 21 C 1.39835 * 119.60217 * 0.02562 * 20 19 18 22 22 H 1.08000 * 120.28489 * 0.04176 * 4 3 2 23 23 H 0.97000 * 120.00477 * 174.18117 * 6 5 4 24 24 H 0.97004 * 119.99944 * 180.02562 * 10 9 7 25 25 H 1.08003 * 120.13602 * 0.05145 * 17 16 15 26 26 H 1.07995 * 119.46525 * 180.02562 * 18 17 16 27 27 H 1.07997 * 119.60543 * 179.69198 * 19 18 17 28 28 H 1.08004 * 120.19740 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2898 0.9133 0.7574 5 6 4.6894 0.8782 0.7270 6 7 5.3975 1.7945 1.4881 7 6 4.7338 2.7864 2.1568 8 1 3.6539 2.8067 2.1597 9 6 5.4486 3.7675 2.8321 10 7 6.7634 3.7425 2.8290 11 14 4.5423 5.1215 3.7458 12 1 4.2910 4.6919 5.1449 13 1 5.3679 6.3557 3.7476 14 1 3.2476 5.3930 3.0711 15 7 5.3563 0.0058 0.0012 16 6 4.7451 -0.9083 -0.7571 17 6 5.4839 -1.8286 -1.5221 18 6 4.8324 -2.7484 -2.2858 19 6 3.4411 -2.7949 -2.3243 20 6 2.6927 -1.9179 -1.5953 21 6 3.3301 -0.9604 -0.8003 22 1 2.7763 1.6438 1.3649 23 1 6.3638 1.7327 1.5467 24 1 7.2626 4.4274 3.3008 25 1 6.5636 -1.8061 -1.5035 26 1 5.4039 -3.4534 -2.8713 27 1 2.9488 -3.5312 -2.9422 28 1 1.6142 -1.9624 -1.6327 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534606.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:41 Heat of formation + Delta-G solvation = 85.876405 kcal Electronic energy + Delta-G solvation = -15298.188494 eV Core-core repulsion = 12700.052509 eV Total energy + Delta-G solvation = -2598.135985 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.85666 -37.24417 -36.44910 -34.72823 -32.56731 -32.06750 -29.54590 -28.57087 -25.26668 -24.26105 -22.26876 -21.80151 -18.66997 -18.50676 -16.99418 -16.45660 -15.65461 -14.72725 -14.41175 -14.19842 -14.06254 -13.70985 -13.36258 -13.10196 -13.02988 -12.62109 -12.12219 -12.02644 -11.97574 -11.34324 -11.10312 -10.88868 -10.66998 -10.58089 -10.10679 -9.66252 -8.93921 -8.53928 -7.92002 -7.13484 -7.02444 -4.14124 0.75618 1.71297 2.24888 2.86547 2.89990 2.95657 2.98951 3.48594 3.68614 3.72722 4.10663 4.56080 4.62009 5.03330 5.14000 5.33127 5.45903 5.69470 5.78116 5.86119 6.00352 6.22705 6.33321 6.57582 6.71051 6.82365 6.97041 7.07220 7.10353 7.30724 7.60170 7.70433 8.21994 8.63756 8.87943 9.36784 10.10939 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.029466 B = 0.006649 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.028377 B = 4210.067423 C = 5145.980923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.274 3.726 3 C 0.020 3.980 4 C -0.108 4.108 5 C 0.355 3.645 6 N -0.494 5.494 7 C -0.308 4.308 8 H 0.111 0.889 9 C 0.032 3.968 10 N -0.858 5.858 11 Si 0.940 3.060 12 H -0.270 1.270 13 H -0.276 1.276 14 H -0.263 1.263 15 N -0.600 5.600 16 C 0.230 3.770 17 C -0.140 4.140 18 C -0.084 4.084 19 C -0.187 4.187 20 C -0.064 4.064 21 C -0.169 4.169 22 H 0.142 0.858 23 H 0.411 0.589 24 H 0.285 0.715 25 H 0.123 0.877 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 -4.866 -3.714 6.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.040 4.040 3 C 0.010 3.990 4 C -0.135 4.135 5 C 0.104 3.896 6 N -0.098 5.098 7 C -0.440 4.440 8 H 0.128 0.872 9 C -0.177 4.177 10 N -0.491 5.491 11 Si 0.764 3.236 12 H -0.196 1.196 13 H -0.201 1.201 14 H -0.188 1.188 15 N -0.329 5.329 16 C 0.100 3.900 17 C -0.162 4.162 18 C -0.104 4.104 19 C -0.208 4.208 20 C -0.083 4.083 21 C -0.178 4.178 22 H 0.159 0.841 23 H 0.248 0.752 24 H 0.096 0.904 25 H 0.141 0.859 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.051 -4.390 -3.364 6.316 hybrid contribution -0.370 0.684 0.509 0.930 sum -3.422 -3.706 -2.854 5.795 Atomic orbital electron populations 1.81169 1.11906 1.08762 1.08977 1.25511 0.92416 0.92999 0.93073 1.16882 0.83595 0.98295 1.00188 1.21845 0.94203 0.98399 0.99023 1.17986 0.87054 0.91744 0.92847 1.41056 1.09911 1.21881 1.36997 1.19954 0.93620 1.02710 1.27689 0.87154 1.25512 0.95740 0.99054 0.97401 1.69663 1.05811 1.34747 1.38903 0.85689 0.79290 0.79041 0.79554 1.19573 1.20099 1.18755 1.67080 1.38323 1.10879 1.16610 1.18177 0.88186 0.91595 0.92015 1.20497 0.99508 0.96570 0.99596 1.20614 0.94292 0.97615 0.97850 1.20403 0.93912 1.02199 1.04239 1.20538 0.98457 0.94092 0.95195 1.18951 0.93736 1.00434 1.04630 0.84086 0.75168 0.90430 0.85853 0.86843 0.87206 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.82 18.54 41.83 0.78 -7.04 15 2 C 0.27 4.80 14.36 -22.47 -0.32 4.47 15 3 C 0.02 0.37 5.93 -104.44 -0.62 -0.25 15 4 C -0.11 -2.06 9.04 -38.69 -0.35 -2.41 15 5 C 0.36 7.59 7.57 -155.74 -1.18 6.41 15 6 N -0.49 -11.13 5.42 -11.20 -0.06 -11.19 15 7 C -0.31 -6.90 9.52 -15.09 -0.14 -7.05 15 8 H 0.11 2.28 5.58 -52.48 -0.29 1.99 15 9 C 0.03 0.72 5.50 -17.45 -0.10 0.62 15 10 N -0.86 -20.39 13.06 55.50 0.72 -19.67 15 11 Si 0.94 17.39 29.55 -169.99 -5.02 12.36 15 12 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 13 H -0.28 -5.13 7.11 56.52 0.40 -4.73 15 14 H -0.26 -4.78 7.11 56.52 0.40 -4.37 15 15 N -0.60 -12.87 10.28 -10.31 -0.11 -12.97 15 16 C 0.23 4.50 6.62 -84.89 -0.56 3.94 15 17 C -0.14 -2.37 9.99 -39.42 -0.39 -2.76 15 18 C -0.08 -1.21 9.94 -39.95 -0.40 -1.61 15 19 C -0.19 -2.72 9.97 -39.86 -0.40 -3.12 15 20 C -0.06 -1.04 9.46 -39.65 -0.38 -1.41 15 21 C -0.17 -3.12 5.90 -104.69 -0.62 -3.74 15 22 H 0.14 2.52 5.86 -52.49 -0.31 2.21 15 23 H 0.41 9.66 8.01 -40.82 -0.33 9.33 15 24 H 0.29 6.34 8.31 -40.82 -0.34 6.00 15 25 H 0.12 1.94 8.06 -52.48 -0.42 1.52 15 26 H 0.11 1.29 8.06 -52.49 -0.42 0.87 15 27 H 0.11 1.31 8.06 -52.49 -0.42 0.89 15 28 H 0.11 1.61 7.35 -52.48 -0.39 1.22 15 LS Contribution 261.26 15.07 3.94 3.94 Total: -1.00 -24.22 261.26 -6.92 -31.15 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -1.72 Total: 10.34 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -5.45 Total: -6.91 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 1.33 Total: -50.87 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.02 Total: 12.36 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -24.22 -6.92 -31.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534606.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.022 kcal (2) G-P(sol) polarization free energy of solvation -24.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds