Wall clock time and date at job start Sun Mar 29 2020 22:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.38838 * 121.34545 * 219.69709 * 3 2 1 5 5 C 1.40033 * 119.42730 * 180.02562 * 4 3 2 6 6 N 1.38579 * 118.83302 * 180.02562 * 5 4 3 7 7 C 1.36803 * 119.99464 * 354.17483 * 6 5 4 8 8 H 1.08004 * 120.00262 * 5.13689 * 7 6 5 9 9 C 1.38905 * 120.00002 * 185.13719 * 7 6 5 10 10 N 1.31499 * 119.99938 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00216 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47052 * 89.99759 * 11 9 7 13 13 H 1.48495 * 109.47071 * 209.99861 * 11 9 7 14 14 H 1.48500 * 109.46858 * 329.99529 * 11 9 7 15 15 N 1.31633 * 122.34105 * 0.02562 * 5 4 3 16 16 C 1.33576 * 122.32636 * 359.96057 * 15 5 4 17 17 C 1.40644 * 121.07987 * 180.02562 * 16 15 5 18 18 C 1.36151 * 119.72245 * 180.02562 * 17 16 15 19 19 C 1.39260 * 121.07062 * 0.02562 * 18 17 16 20 20 C 1.36403 * 120.79626 * 359.97438 * 19 18 17 21 21 C 1.39835 * 119.60217 * 0.02562 * 20 19 18 22 22 H 1.08000 * 120.28489 * 0.04176 * 4 3 2 23 23 H 0.97000 * 120.00477 * 174.18117 * 6 5 4 24 24 H 0.97004 * 119.99944 * 180.02562 * 10 9 7 25 25 H 1.08003 * 120.13602 * 0.05145 * 17 16 15 26 26 H 1.07995 * 119.46525 * 180.02562 * 18 17 16 27 27 H 1.07997 * 119.60543 * 179.69198 * 19 18 17 28 28 H 1.08004 * 120.19740 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2898 0.9133 0.7574 5 6 4.6894 0.8782 0.7270 6 7 5.3975 1.7945 1.4881 7 6 4.7338 2.7864 2.1568 8 1 3.6539 2.8067 2.1597 9 6 5.4486 3.7675 2.8321 10 7 6.7634 3.7425 2.8290 11 14 4.5423 5.1215 3.7458 12 1 4.2910 4.6919 5.1449 13 1 5.3679 6.3557 3.7476 14 1 3.2476 5.3930 3.0711 15 7 5.3563 0.0058 0.0012 16 6 4.7451 -0.9083 -0.7571 17 6 5.4839 -1.8286 -1.5221 18 6 4.8324 -2.7484 -2.2858 19 6 3.4411 -2.7949 -2.3243 20 6 2.6927 -1.9179 -1.5953 21 6 3.3301 -0.9604 -0.8003 22 1 2.7763 1.6438 1.3649 23 1 6.3638 1.7327 1.5467 24 1 7.2626 4.4274 3.3008 25 1 6.5636 -1.8061 -1.5035 26 1 5.4039 -3.4534 -2.8713 27 1 2.9488 -3.5312 -2.9422 28 1 1.6142 -1.9624 -1.6327 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534606.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:41 Heat of formation + Delta-G solvation = 73.972269 kcal Electronic energy + Delta-G solvation = -15298.704696 eV Core-core repulsion = 12700.052509 eV Total energy + Delta-G solvation = -2598.652187 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.35414 -38.70442 -37.91442 -36.23250 -34.05775 -33.62804 -30.92630 -30.04043 -26.85859 -25.75834 -23.71212 -23.19182 -20.19266 -20.02174 -18.38399 -17.92691 -17.22368 -16.19387 -15.83174 -15.65396 -15.57735 -15.11874 -14.74681 -14.54018 -14.53238 -14.07869 -13.55822 -13.50798 -13.42714 -12.78623 -12.54921 -12.21799 -12.11655 -11.99718 -11.58580 -11.13226 -10.48593 -10.12897 -9.30802 -8.65049 -8.60695 -5.84569 -0.69164 0.28049 0.86434 1.41217 1.45371 1.46070 1.57029 2.02491 2.19106 2.32969 2.59633 2.99733 3.06162 3.51212 3.71343 3.99743 4.10415 4.32060 4.38833 4.56615 4.68084 4.77197 4.93113 5.19326 5.22333 5.34076 5.59322 5.66603 5.77159 5.85595 6.21232 6.25327 6.60844 7.05712 7.26476 7.76839 8.55270 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.029466 B = 0.006649 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.028377 B = 4210.067423 C = 5145.980923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.287 3.713 3 C 0.037 3.963 4 C -0.128 4.128 5 C 0.360 3.640 6 N -0.526 5.526 7 C -0.327 4.327 8 H 0.120 0.880 9 C -0.014 4.014 10 N -0.907 5.907 11 Si 1.001 2.999 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.256 1.256 15 N -0.615 5.615 16 C 0.194 3.806 17 C -0.149 4.149 18 C -0.071 4.071 19 C -0.161 4.161 20 C -0.078 4.078 21 C -0.173 4.173 22 H 0.150 0.850 23 H 0.399 0.601 24 H 0.283 0.717 25 H 0.130 0.870 26 H 0.156 0.844 27 H 0.150 0.850 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.102 -7.244 -5.721 10.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.028 4.028 3 C 0.026 3.974 4 C -0.155 4.155 5 C 0.108 3.892 6 N -0.133 5.133 7 C -0.458 4.458 8 H 0.138 0.862 9 C -0.217 4.217 10 N -0.544 5.544 11 Si 0.824 3.176 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.180 1.180 15 N -0.344 5.344 16 C 0.067 3.933 17 C -0.170 4.170 18 C -0.090 4.090 19 C -0.181 4.181 20 C -0.097 4.097 21 C -0.181 4.181 22 H 0.168 0.832 23 H 0.234 0.766 24 H 0.092 0.908 25 H 0.148 0.852 26 H 0.174 0.826 27 H 0.168 0.832 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.879 -6.841 -5.431 10.005 hybrid contribution 0.057 0.905 0.726 1.162 sum -4.822 -5.936 -4.705 8.979 Atomic orbital electron populations 1.81194 1.11889 1.08840 1.08997 1.25205 0.91924 0.92782 0.92867 1.16909 0.83879 0.97470 0.99093 1.21820 0.93382 0.99752 1.00549 1.18293 0.87991 0.90962 0.91907 1.41000 1.09176 1.23509 1.39626 1.20223 0.94084 1.03174 1.28290 0.86235 1.26300 0.96277 1.00853 0.98248 1.69766 1.07117 1.36028 1.41459 0.84777 0.78228 0.76327 0.78308 1.19462 1.20515 1.17960 1.67082 1.39575 1.11151 1.16572 1.18661 0.89259 0.92375 0.92999 1.20780 1.00140 0.96564 0.99554 1.21103 0.94709 0.96795 0.96416 1.20969 0.93994 1.01030 1.02087 1.20793 0.99528 0.94041 0.95330 1.19219 0.93483 1.00778 1.04634 0.83246 0.76607 0.90779 0.85203 0.82631 0.83217 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -14.68 18.54 19.01 0.35 -14.32 15 2 C 0.29 9.45 14.36 88.34 1.27 10.71 15 3 C 0.04 1.29 5.93 -19.75 -0.12 1.17 15 4 C -0.13 -4.94 9.04 22.85 0.21 -4.73 15 5 C 0.36 15.83 7.57 133.65 1.01 16.84 15 6 N -0.53 -25.03 5.42 -189.35 -1.03 -26.05 15 7 C -0.33 -15.36 9.52 84.08 0.80 -14.56 15 8 H 0.12 5.12 5.58 -2.91 -0.02 5.10 15 9 C -0.01 -0.64 5.50 84.90 0.47 -0.17 15 10 N -0.91 -45.87 13.06 21.66 0.28 -45.59 15 11 Si 1.00 36.94 29.55 68.60 2.03 38.97 15 12 H -0.27 -9.72 7.11 99.48 0.71 -9.02 15 13 H -0.28 -10.32 7.11 99.48 0.71 -9.61 15 14 H -0.26 -8.94 7.11 99.48 0.71 -8.23 15 15 N -0.61 -26.74 10.28 -186.54 -1.92 -28.66 15 16 C 0.19 7.34 6.62 40.31 0.27 7.61 15 17 C -0.15 -4.63 9.99 22.37 0.22 -4.41 15 18 C -0.07 -1.68 9.94 22.03 0.22 -1.46 15 19 C -0.16 -3.76 9.97 22.09 0.22 -3.54 15 20 C -0.08 -2.22 9.46 22.23 0.21 -2.01 15 21 C -0.17 -6.02 5.90 -19.91 -0.12 -6.14 15 22 H 0.15 5.42 5.86 -2.91 -0.02 5.40 15 23 H 0.40 20.17 8.01 -92.71 -0.74 19.43 15 24 H 0.28 13.40 8.31 -92.70 -0.77 12.63 15 25 H 0.13 3.81 8.06 -2.91 -0.02 3.79 15 26 H 0.16 2.48 8.06 -2.91 -0.02 2.46 15 27 H 0.15 2.45 8.06 -2.91 -0.02 2.42 15 28 H 0.12 3.12 7.35 -2.91 -0.02 3.10 15 Total: -1.00 -53.74 261.26 4.86 -48.88 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.48 Total: 27.47 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 4.66 Total: -0.69 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -2.31 Total: -114.63 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Total: -53.74 4.86 -48.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534606.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.857 kcal (2) G-P(sol) polarization free energy of solvation -53.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds