Wall clock time and date at job start Sun Mar 29 2020 22:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86804 * 119.99605 * 2 1 4 4 H 1.48500 * 109.46873 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47005 * 299.99394 * 3 2 1 6 6 H 1.48492 * 109.47408 * 59.99887 * 3 2 1 7 7 C 1.40054 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99790 * 173.70205 * 7 2 1 9 9 C 1.41266 * 120.00119 * 353.97166 * 7 2 1 10 10 C 1.40718 * 120.15922 * 185.85919 * 9 7 2 11 11 N 1.31905 * 119.93311 * 179.97438 * 10 9 7 12 12 C 1.32158 * 120.27160 * 359.97438 * 11 10 9 13 13 C 1.39921 * 120.31698 * 0.02562 * 12 11 10 14 14 N 1.38833 * 119.96617 * 180.02562 * 13 12 11 15 15 C 1.46499 * 120.00072 * 359.97438 * 14 13 12 16 16 C 1.53003 * 109.47193 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.46928 * 180.02562 * 16 15 14 18 18 S 1.81404 * 109.46954 * 180.02562 * 17 16 15 19 19 N 1.32257 * 120.06730 * 359.73991 * 13 12 11 20 20 H 0.96995 * 120.00069 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.03830 * 359.95380 * 10 9 7 22 22 H 1.07993 * 119.84416 * 179.97438 * 12 11 10 23 23 H 0.97003 * 120.00086 * 179.97438 * 14 13 12 24 24 H 1.08997 * 109.47684 * 300.00777 * 15 14 13 25 25 H 1.09006 * 109.46788 * 60.00406 * 15 14 13 26 26 H 1.08998 * 109.46806 * 300.00169 * 16 15 14 27 27 H 1.09001 * 109.46847 * 60.00744 * 16 15 14 28 28 H 1.08997 * 109.47705 * 300.00383 * 17 16 15 29 29 H 1.09001 * 109.46860 * 60.00616 * 17 16 15 30 30 H 1.34505 * 102.99815 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.7012 1.3465 0.0006 5 1 1.8825 2.3964 -1.2126 6 1 1.8825 2.3965 1.2124 7 6 2.0076 -1.2129 0.0005 8 1 3.0828 -1.2157 -0.1021 9 6 1.3072 -2.4329 0.1296 10 6 2.0132 -3.6437 0.2544 11 7 1.3547 -4.7802 0.3751 12 6 0.0332 -4.7871 0.3799 13 6 -0.6799 -3.5896 0.2565 14 7 -2.0681 -3.6053 0.2630 15 6 -2.7857 -4.8753 0.3984 16 6 -4.2931 -4.6143 0.3757 17 6 -5.0425 -5.9407 0.5178 18 16 -6.8297 -5.6314 0.4901 19 7 -0.0328 -2.4421 0.1394 20 1 -0.4850 0.8400 -0.0004 21 1 3.0932 -3.6425 0.2510 22 1 -0.4990 -5.7216 0.4787 23 1 -2.5630 -2.7753 0.1779 24 1 -2.5188 -5.5335 -0.4283 25 1 -2.5126 -5.3481 1.3419 26 1 -4.5603 -3.9561 1.2024 27 1 -4.5659 -4.1419 -0.5679 28 1 -4.7753 -6.5994 -0.3085 29 1 -4.7697 -6.4128 1.4617 30 1 -7.3521 -6.8638 0.6223 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159869462.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:37 Heat of formation + Delta-G solvation = 37.278374 kcal Electronic energy + Delta-G solvation = -14277.141677 eV Core-core repulsion = 11812.342274 eV Total energy + Delta-G solvation = -2464.799403 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.90369 -36.26882 -33.94176 -33.06361 -31.34554 -29.06950 -25.90118 -25.62104 -22.60174 -21.69382 -20.88778 -17.60426 -17.35838 -16.51577 -15.70224 -15.35930 -15.03862 -14.84587 -14.43004 -13.62325 -13.61309 -13.07179 -12.63853 -12.26145 -11.63882 -11.40798 -11.37973 -11.16425 -11.13348 -10.68159 -10.54018 -10.32182 -9.85687 -9.62270 -9.37356 -8.34737 -8.27550 -7.38062 -6.71320 -6.43926 -4.65020 1.38453 2.52738 2.70766 3.05692 3.09961 3.12510 3.28741 3.88415 3.99350 4.69061 4.73151 4.88045 5.08128 5.38497 5.39187 5.70741 5.89012 6.07218 6.12911 6.13395 6.34284 6.54053 6.80125 7.04835 7.14326 7.60872 7.96684 8.05980 8.44991 8.57045 8.86638 9.42544 10.01518 10.19907 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.032951 B = 0.004898 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.545355 B = 5715.003806 C = 6536.833638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.068 3.932 3 Si 0.910 3.090 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.416 4.416 8 H 0.091 0.909 9 C 0.246 3.754 10 C -0.107 4.107 11 N -0.408 5.408 12 C -0.171 4.171 13 C 0.373 3.627 14 N -0.732 5.732 15 C 0.145 3.855 16 C -0.116 4.116 17 C -0.061 4.061 18 S -0.251 6.251 19 N -0.509 5.509 20 H 0.274 0.726 21 H 0.130 0.870 22 H 0.119 0.881 23 H 0.397 0.603 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.871 -4.940 0.620 10.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.449 4.449 8 H 0.109 0.891 9 C 0.117 3.883 10 C -0.278 4.278 11 N -0.120 5.120 12 C -0.333 4.333 13 C 0.130 3.870 14 N -0.370 5.370 15 C 0.018 3.982 16 C -0.154 4.154 17 C -0.210 4.210 18 S -0.099 6.099 19 N -0.235 5.235 20 H 0.085 0.915 21 H 0.147 0.853 22 H 0.137 0.863 23 H 0.232 0.768 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -9.935 -4.693 0.611 11.004 hybrid contribution 0.587 -0.214 0.111 0.634 sum -9.348 -4.907 0.723 10.582 Atomic orbital electron populations 1.70115 1.07373 1.27933 1.27605 1.26131 0.94928 1.01322 0.93464 0.86221 0.80949 0.80815 0.78601 1.18176 1.19791 1.19755 1.19666 0.94955 0.89255 1.41050 0.89119 1.19098 0.87695 0.93234 0.88231 1.22911 0.98963 0.89320 1.16571 1.67499 1.08262 1.30223 1.06007 1.21905 0.90742 0.95782 1.24833 1.19490 0.85003 0.92027 0.90528 1.44042 1.02641 1.07623 1.82677 1.21021 0.89136 0.87208 1.00874 1.21499 0.94086 0.95429 1.04426 1.23033 0.90446 1.01992 1.05550 1.87607 1.08329 1.15802 1.98205 1.69033 1.08360 1.22337 1.23800 0.91520 0.85276 0.86315 0.76780 0.92625 0.92627 0.90042 0.90031 0.89447 0.89446 0.95189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.26 11.51 55.55 0.64 -17.62 16 2 C 0.07 1.68 5.49 -17.34 -0.10 1.58 16 3 Si 0.91 17.98 29.57 -169.99 -5.03 12.95 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.42 -10.89 9.15 -37.75 -0.35 -11.23 16 8 H 0.09 2.19 7.86 -52.48 -0.41 1.77 16 9 C 0.25 6.75 6.54 -84.83 -0.55 6.19 16 10 C -0.11 -2.79 10.97 -16.58 -0.18 -2.97 16 11 N -0.41 -10.47 10.47 -12.11 -0.13 -10.59 16 12 C -0.17 -4.10 10.50 -16.78 -0.18 -4.27 16 13 C 0.37 9.01 7.66 -155.01 -1.19 7.82 16 14 N -0.73 -13.92 5.72 -60.28 -0.34 -14.26 16 15 C 0.15 2.03 4.90 -4.04 -0.02 2.01 16 16 C -0.12 -1.26 5.34 -26.73 -0.14 -1.41 16 17 C -0.06 -0.55 6.30 37.16 0.23 -0.32 16 18 S -0.25 -2.55 25.88 -107.50 -2.78 -5.33 16 19 N -0.51 -13.87 8.09 -10.14 -0.08 -13.95 16 20 H 0.27 6.34 8.29 -40.82 -0.34 6.00 16 21 H 0.13 3.06 8.06 -52.49 -0.42 2.63 16 22 H 0.12 2.48 6.70 -52.49 -0.35 2.13 16 23 H 0.40 7.45 8.60 -40.82 -0.35 7.10 16 24 H 0.06 0.77 7.93 -51.93 -0.41 0.35 16 25 H 0.06 0.77 7.93 -51.93 -0.41 0.35 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.08 0.76 9.07 97.61 0.89 1.64 16 LS Contribution 276.41 15.07 4.17 4.17 Total: -1.00 -29.78 276.41 -8.33 -38.11 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -2.30 Total: 9.13 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.47 Total: -2.60 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.09 Total: -56.42 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -2.78 Total: -5.33 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.78 -8.33 -38.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159869462.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.386 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds