Wall clock time and date at job start Sun Mar 29 2020 22:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86804 * 119.99605 * 2 1 4 4 H 1.48500 * 109.46873 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47005 * 299.99394 * 3 2 1 6 6 H 1.48492 * 109.47408 * 59.99887 * 3 2 1 7 7 C 1.40054 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99790 * 173.70205 * 7 2 1 9 9 C 1.41266 * 120.00119 * 353.97166 * 7 2 1 10 10 C 1.40718 * 120.15922 * 185.85919 * 9 7 2 11 11 N 1.31905 * 119.93311 * 179.97438 * 10 9 7 12 12 C 1.32158 * 120.27160 * 359.97438 * 11 10 9 13 13 C 1.39921 * 120.31698 * 0.02562 * 12 11 10 14 14 N 1.38833 * 119.96617 * 180.02562 * 13 12 11 15 15 C 1.46499 * 120.00072 * 359.97438 * 14 13 12 16 16 C 1.53003 * 109.47193 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.46928 * 180.02562 * 16 15 14 18 18 S 1.81404 * 109.46954 * 180.02562 * 17 16 15 19 19 N 1.32257 * 120.06730 * 359.73991 * 13 12 11 20 20 H 0.96995 * 120.00069 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.03830 * 359.95380 * 10 9 7 22 22 H 1.07993 * 119.84416 * 179.97438 * 12 11 10 23 23 H 0.97003 * 120.00086 * 179.97438 * 14 13 12 24 24 H 1.08997 * 109.47684 * 300.00777 * 15 14 13 25 25 H 1.09006 * 109.46788 * 60.00406 * 15 14 13 26 26 H 1.08998 * 109.46806 * 300.00169 * 16 15 14 27 27 H 1.09001 * 109.46847 * 60.00744 * 16 15 14 28 28 H 1.08997 * 109.47705 * 300.00383 * 17 16 15 29 29 H 1.09001 * 109.46860 * 60.00616 * 17 16 15 30 30 H 1.34505 * 102.99815 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 3.7012 1.3465 0.0006 5 1 1.8825 2.3964 -1.2126 6 1 1.8825 2.3965 1.2124 7 6 2.0076 -1.2129 0.0005 8 1 3.0828 -1.2157 -0.1021 9 6 1.3072 -2.4329 0.1296 10 6 2.0132 -3.6437 0.2544 11 7 1.3547 -4.7802 0.3751 12 6 0.0332 -4.7871 0.3799 13 6 -0.6799 -3.5896 0.2565 14 7 -2.0681 -3.6053 0.2630 15 6 -2.7857 -4.8753 0.3984 16 6 -4.2931 -4.6143 0.3757 17 6 -5.0425 -5.9407 0.5178 18 16 -6.8297 -5.6314 0.4901 19 7 -0.0328 -2.4421 0.1394 20 1 -0.4850 0.8400 -0.0004 21 1 3.0932 -3.6425 0.2510 22 1 -0.4990 -5.7216 0.4787 23 1 -2.5630 -2.7753 0.1779 24 1 -2.5188 -5.5335 -0.4283 25 1 -2.5126 -5.3481 1.3419 26 1 -4.5603 -3.9561 1.2024 27 1 -4.5659 -4.1419 -0.5679 28 1 -4.7753 -6.5994 -0.3085 29 1 -4.7697 -6.4128 1.4617 30 1 -7.3521 -6.8638 0.6223 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159869462.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:37 Heat of formation + Delta-G solvation = 17.903753 kcal Electronic energy + Delta-G solvation = -14277.981823 eV Core-core repulsion = 11812.342274 eV Total energy + Delta-G solvation = -2465.639549 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.76841 -37.63162 -35.79795 -34.47495 -33.12730 -30.77798 -27.75834 -26.86784 -24.36458 -23.10937 -22.44968 -19.37620 -18.41882 -18.09944 -17.11657 -16.74787 -16.65452 -16.50174 -15.77411 -15.11231 -14.89867 -14.67670 -14.02477 -13.36919 -13.27465 -13.08147 -12.95115 -12.47820 -12.40890 -12.20290 -11.94481 -11.66992 -11.34583 -11.31295 -11.28468 -10.19603 -9.29920 -9.06635 -8.44876 -8.30657 -6.61542 0.62850 0.86628 1.28275 1.44714 1.57315 1.60938 1.80485 2.23447 2.55599 2.85871 3.89929 3.95013 3.96159 4.07597 4.24024 4.47590 4.47860 4.58399 4.62138 4.74902 4.97036 5.10781 5.16779 5.19363 5.26710 5.75078 6.12826 6.26928 6.67707 6.73441 7.03216 7.49205 8.11166 8.37672 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.032951 B = 0.004898 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.545355 B = 5715.003806 C = 6536.833638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.024 3.976 3 Si 0.993 3.007 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.443 4.443 8 H 0.100 0.900 9 C 0.216 3.784 10 C -0.135 4.135 11 N -0.418 5.418 12 C -0.176 4.176 13 C 0.365 3.635 14 N -0.724 5.724 15 C 0.141 3.859 16 C -0.103 4.103 17 C -0.052 4.052 18 S -0.279 6.279 19 N -0.541 5.541 20 H 0.282 0.718 21 H 0.141 0.859 22 H 0.150 0.850 23 H 0.397 0.603 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.443 -4.916 0.712 10.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.199 4.199 3 Si 0.813 3.187 4 H -0.174 1.174 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.475 4.475 8 H 0.118 0.882 9 C 0.088 3.912 10 C -0.304 4.304 11 N -0.129 5.129 12 C -0.338 4.338 13 C 0.119 3.881 14 N -0.359 5.359 15 C 0.016 3.984 16 C -0.142 4.142 17 C -0.201 4.201 18 S -0.128 6.128 19 N -0.269 5.269 20 H 0.093 0.907 21 H 0.158 0.842 22 H 0.167 0.833 23 H 0.232 0.768 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.529 -4.704 0.704 11.553 hybrid contribution 0.625 -0.326 0.086 0.710 sum -9.904 -5.030 0.790 11.136 Atomic orbital electron populations 1.70189 1.09065 1.29511 1.27669 1.27081 0.95766 1.04722 0.92362 0.84993 0.79556 0.75426 0.78773 1.17408 1.19011 1.19199 1.20084 0.95708 0.90005 1.41748 0.88175 1.19524 0.88399 0.94285 0.88962 1.23051 0.99625 0.89327 1.18408 1.67504 1.09181 1.30129 1.06130 1.22393 0.90487 0.96990 1.23957 1.19853 0.86974 0.91543 0.89705 1.44256 1.00942 1.09593 1.81152 1.21284 0.90508 0.85124 1.01518 1.21340 0.92055 0.96572 1.04260 1.22970 0.89200 1.00939 1.06955 1.87732 1.09519 1.17301 1.98281 1.69038 1.08621 1.23904 1.25350 0.90688 0.84170 0.83273 0.76789 0.91791 0.91821 0.90296 0.90265 0.88055 0.88066 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.52 11.51 21.84 0.25 -38.27 16 2 C 0.02 1.19 5.49 85.30 0.47 1.65 16 3 Si 0.99 36.45 29.57 68.60 2.03 38.48 16 4 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 5 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 6 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 7 C -0.44 -23.50 9.15 23.46 0.21 -23.29 16 8 H 0.10 4.89 7.86 -2.91 -0.02 4.86 16 9 C 0.22 12.14 6.54 40.16 0.26 12.40 16 10 C -0.14 -7.18 10.97 85.29 0.94 -6.24 16 11 N -0.42 -21.44 10.47 -192.23 -2.01 -23.45 16 12 C -0.18 -8.28 10.50 85.05 0.89 -7.39 16 13 C 0.36 17.58 7.66 133.36 1.02 18.60 16 14 N -0.72 -26.90 5.72 -344.63 -1.97 -28.87 16 15 C 0.14 3.66 4.90 86.38 0.42 4.08 16 16 C -0.10 -2.05 5.34 30.59 0.16 -1.89 16 17 C -0.05 -0.80 6.30 71.98 0.45 -0.35 16 18 S -0.28 -5.15 25.88 -56.49 -1.46 -6.62 16 19 N -0.54 -29.99 8.09 -186.01 -1.51 -31.50 16 20 H 0.28 13.08 8.29 -92.71 -0.77 12.31 16 21 H 0.14 6.80 8.06 -2.91 -0.02 6.78 16 22 H 0.15 5.93 6.70 -2.91 -0.02 5.91 16 23 H 0.40 14.75 8.60 -92.71 -0.80 13.95 16 24 H 0.06 1.59 7.93 -2.39 -0.02 1.58 16 25 H 0.06 1.59 7.93 -2.38 -0.02 1.57 16 26 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.10 1.59 9.07 73.35 0.67 2.25 16 Total: -1.00 -64.34 276.41 1.20 -63.14 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 1.04 Total: 29.51 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 4.84 Total: -2.42 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -5.24 Total: -122.09 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -1.46 Total: -6.62 kcal Total: -64.34 1.20 -63.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159869462.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.046 kcal (2) G-P(sol) polarization free energy of solvation -64.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds