Wall clock time and date at job start Sun Mar 29 2020 21:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35870 * 117.00152 * 2 1 4 4 C 1.38951 * 120.51270 * 359.97438 * 3 2 1 5 5 C 1.38640 * 118.44266 * 180.02562 * 4 3 2 6 6 N 1.48020 * 120.30737 * 179.97438 * 5 4 3 7 7 O 1.31701 * 119.99787 * 0.02562 * 6 5 4 8 8 O 1.31696 * 120.00176 * 180.02562 * 6 5 4 9 9 C 1.38323 * 119.38566 * 0.02562 * 5 4 3 10 10 N 1.31789 * 120.99376 * 359.97197 * 9 5 4 11 11 C 1.32431 * 121.68873 * 359.75267 * 10 9 5 12 12 N 1.38953 * 119.74625 * 180.28653 * 11 10 9 13 13 C 1.32712 * 119.99726 * 0.24809 * 12 11 10 14 14 H 1.07996 * 119.99875 * 0.02562 * 13 12 11 15 15 C 1.46767 * 119.99903 * 179.97438 * 13 12 11 16 16 N 1.29341 * 120.00293 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00308 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46731 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47069 * 120.00048 * 17 15 13 20 20 H 1.48503 * 109.47259 * 240.00516 * 17 15 13 21 21 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46938 * 59.99950 * 1 2 3 23 23 H 1.09004 * 109.46926 * 300.00072 * 1 2 3 24 24 H 1.07995 * 120.77351 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.50661 * 180.02562 * 9 5 4 26 26 H 0.97001 * 120.00247 * 180.24677 * 12 11 10 27 27 H 0.96998 * 120.00600 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2996 2.3827 -0.0005 5 6 1.9733 3.5944 -0.0011 6 7 1.2193 4.8682 -0.0022 7 8 -0.0976 4.8539 -0.0022 8 8 1.8654 6.0158 -0.0032 9 6 3.3565 3.6020 -0.0016 10 7 4.0413 2.4760 -0.0010 11 6 3.4400 1.2961 0.0049 12 7 4.2019 0.1341 0.0113 13 6 5.5269 0.2094 0.0164 14 1 6.0129 1.1738 0.0160 15 6 6.3316 -1.0179 0.0237 16 7 5.7496 -2.1730 0.0247 17 14 8.1967 -0.9120 0.0302 18 1 8.6114 0.5140 0.0260 19 1 8.7261 -1.5785 1.2470 20 1 8.7350 -1.5871 -1.1780 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 0.2201 2.3504 -0.0014 25 1 3.8832 4.5448 -0.0016 26 1 3.7654 -0.7322 0.0120 27 1 6.2814 -2.9842 0.0299 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163178228.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:00 Heat of formation + Delta-G solvation = 17.015937 kcal Electronic energy + Delta-G solvation = -16445.532233 eV Core-core repulsion = 13401.268219 eV Total energy + Delta-G solvation = -3044.264013 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.03855 -37.70273 -37.27090 -36.04242 -33.59402 -32.64075 -30.88812 -29.48342 -27.11453 -26.00347 -24.40628 -22.19129 -21.33280 -19.39845 -18.02353 -17.48799 -16.81076 -15.92475 -15.66289 -15.44018 -15.38720 -14.64280 -14.30548 -13.96359 -13.49892 -13.14424 -12.84941 -12.14918 -11.98555 -11.71085 -11.23117 -11.19883 -11.02094 -10.93508 -10.00801 -9.67343 -9.64738 -9.26178 -8.85741 -8.84835 -8.18251 -7.51822 -4.37346 0.49550 2.14732 2.25286 2.45424 2.58922 2.60148 2.96008 3.12023 3.63607 3.67431 3.96538 4.60000 5.31649 5.36928 5.46695 5.61095 5.67971 5.75046 5.86419 5.94800 6.33424 6.52150 6.75387 6.95007 7.15813 7.49351 7.73342 7.98184 8.11683 8.58359 8.83311 8.94101 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.030107 B = 0.006768 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.783890 B = 4136.364503 C = 5050.992390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.324 6.324 3 C 0.034 3.966 4 C -0.125 4.125 5 C -0.162 4.162 6 N 0.057 4.943 7 O -0.348 6.348 8 O -0.340 6.340 9 C 0.224 3.776 10 N -0.501 5.501 11 C 0.201 3.799 12 N -0.386 5.386 13 C -0.216 4.216 14 H 0.155 0.845 15 C 0.031 3.969 16 N -0.757 5.757 17 Si 0.961 3.039 18 H -0.242 1.242 19 H -0.261 1.261 20 H -0.261 1.261 21 H 0.093 0.907 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.135 0.865 25 H 0.160 0.840 26 H 0.420 0.580 27 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.836 -8.073 0.031 8.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.237 6.237 3 C -0.018 4.018 4 C -0.150 4.150 5 C -0.275 4.275 6 N 0.465 4.535 7 O -0.491 6.491 8 O -0.485 6.485 9 C 0.042 3.958 10 N -0.225 5.225 11 C -0.039 4.039 12 N 0.026 4.974 13 C -0.359 4.359 14 H 0.172 0.828 15 C -0.195 4.195 16 N -0.381 5.381 17 Si 0.781 3.219 18 H -0.165 1.165 19 H -0.185 1.185 20 H -0.186 1.186 21 H 0.111 0.889 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.153 0.847 25 H 0.178 0.822 26 H 0.258 0.742 27 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.950 -8.932 0.028 10.212 hybrid contribution -1.068 -0.103 0.002 1.073 sum 3.881 -9.036 0.030 9.834 Atomic orbital electron populations 1.22924 0.78906 1.02985 1.01445 1.85877 1.21018 1.26694 1.90144 1.18671 0.90258 0.84136 1.08738 1.20249 0.99682 0.89382 1.05698 1.19892 0.91432 0.81570 1.34630 1.49509 1.01923 1.03021 0.99062 1.96066 0.90439 1.96296 1.66348 1.96076 1.69881 1.16541 1.65994 1.21828 0.88537 0.95872 0.89597 1.67173 1.36581 0.95679 1.23041 1.17027 0.83975 0.86701 1.16208 1.40579 1.06834 1.07352 1.42676 1.22412 0.81678 0.96455 1.35351 0.82751 1.27951 1.05337 0.93195 0.93066 1.68644 1.42539 1.00347 1.26579 0.85253 0.75237 0.81753 0.79693 1.16491 1.18547 1.18551 0.88858 0.92922 0.92913 0.84720 0.82246 0.74165 0.87198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.83 101.05 0.99 1.45 15 2 O -0.32 -5.84 9.74 -19.33 -0.19 -6.03 15 3 C 0.03 0.69 6.73 -38.78 -0.26 0.43 15 4 C -0.12 -2.70 8.65 -39.17 -0.34 -3.04 15 5 C -0.16 -3.82 6.91 -79.77 -0.55 -4.37 15 6 N 0.06 1.51 4.98 34.05 0.17 1.68 15 7 O -0.35 -9.55 19.22 -31.57 -0.61 -10.16 15 8 O -0.34 -9.18 19.17 -31.57 -0.61 -9.78 15 9 C 0.22 4.86 10.73 -17.54 -0.19 4.68 15 10 N -0.50 -10.78 9.03 -12.27 -0.11 -10.89 15 11 C 0.20 4.25 7.43 -154.84 -1.15 3.10 15 12 N -0.39 -7.60 5.28 -9.83 -0.05 -7.65 15 13 C -0.22 -4.07 9.94 -13.73 -0.14 -4.21 15 14 H 0.16 2.94 7.10 -52.49 -0.37 2.56 15 15 C 0.03 0.52 5.69 -15.16 -0.09 0.44 15 16 N -0.76 -13.08 13.08 56.00 0.73 -12.34 15 17 Si 0.96 12.74 29.65 -169.99 -5.04 7.70 15 18 H -0.24 -3.28 7.11 56.52 0.40 -2.88 15 19 H -0.26 -3.44 7.11 56.52 0.40 -3.04 15 20 H -0.26 -3.44 7.11 56.52 0.40 -3.04 15 21 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.05 0.71 7.70 -51.93 -0.40 0.32 15 23 H 0.05 0.72 7.70 -51.93 -0.40 0.32 15 24 H 0.14 2.78 6.05 -52.49 -0.32 2.46 15 25 H 0.16 3.19 7.58 -52.49 -0.40 2.79 15 26 H 0.42 8.03 7.31 -40.82 -0.30 7.73 15 27 H 0.31 4.72 8.26 -40.82 -0.34 4.38 15 LS Contribution 257.22 15.07 3.88 3.88 Total: -1.00 -27.65 257.22 -5.28 -32.94 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -1.74 Total: 12.18 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.72 Total: -1.53 kcal Atomic # 7 Polarization: -29.94 SS G_CDS: 0.74 Total: -29.20 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -1.40 Total: -25.97 kcal Atomic # 14 Polarization: 12.74 SS G_CDS: -5.04 Total: 7.70 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.65 -5.28 -32.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163178228.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.953 kcal (2) G-P(sol) polarization free energy of solvation -27.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds