Wall clock time and date at job start Sun Mar 29 2020 21:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35870 * 117.00152 * 2 1 4 4 C 1.38951 * 120.51270 * 359.97438 * 3 2 1 5 5 C 1.38640 * 118.44266 * 180.02562 * 4 3 2 6 6 N 1.48020 * 120.30737 * 179.97438 * 5 4 3 7 7 O 1.31701 * 119.99787 * 0.02562 * 6 5 4 8 8 O 1.31696 * 120.00176 * 180.02562 * 6 5 4 9 9 C 1.38323 * 119.38566 * 0.02562 * 5 4 3 10 10 N 1.31789 * 120.99376 * 359.97197 * 9 5 4 11 11 C 1.32431 * 121.68873 * 359.75267 * 10 9 5 12 12 N 1.38953 * 119.74625 * 180.28653 * 11 10 9 13 13 C 1.32712 * 119.99726 * 0.24809 * 12 11 10 14 14 H 1.07996 * 119.99875 * 0.02562 * 13 12 11 15 15 C 1.46767 * 119.99903 * 179.97438 * 13 12 11 16 16 N 1.29341 * 120.00293 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00308 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46731 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47069 * 120.00048 * 17 15 13 20 20 H 1.48503 * 109.47259 * 240.00516 * 17 15 13 21 21 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46938 * 59.99950 * 1 2 3 23 23 H 1.09004 * 109.46926 * 300.00072 * 1 2 3 24 24 H 1.07995 * 120.77351 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.50661 * 180.02562 * 9 5 4 26 26 H 0.97001 * 120.00247 * 180.24677 * 12 11 10 27 27 H 0.96998 * 120.00600 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2996 2.3827 -0.0005 5 6 1.9733 3.5944 -0.0011 6 7 1.2193 4.8682 -0.0022 7 8 -0.0976 4.8539 -0.0022 8 8 1.8654 6.0158 -0.0032 9 6 3.3565 3.6020 -0.0016 10 7 4.0413 2.4760 -0.0010 11 6 3.4400 1.2961 0.0049 12 7 4.2019 0.1341 0.0113 13 6 5.5269 0.2094 0.0164 14 1 6.0129 1.1738 0.0160 15 6 6.3316 -1.0179 0.0237 16 7 5.7496 -2.1730 0.0247 17 14 8.1967 -0.9120 0.0302 18 1 8.6114 0.5140 0.0260 19 1 8.7261 -1.5785 1.2470 20 1 8.7350 -1.5871 -1.1780 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 0.2201 2.3504 -0.0014 25 1 3.8832 4.5448 -0.0016 26 1 3.7654 -0.7322 0.0120 27 1 6.2814 -2.9842 0.0299 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163178228.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:00 Heat of formation + Delta-G solvation = -5.492999 kcal Electronic energy + Delta-G solvation = -16446.508293 eV Core-core repulsion = 13401.268219 eV Total energy + Delta-G solvation = -3045.240074 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72091 -39.51255 -38.78565 -37.25538 -35.74492 -33.40524 -32.29508 -31.13425 -28.39016 -27.96015 -25.98309 -23.82917 -22.81575 -21.51436 -19.72418 -18.84639 -18.42211 -17.60620 -17.01224 -16.91222 -16.68241 -16.32834 -15.56239 -15.39673 -15.13754 -14.51173 -14.41482 -13.86268 -13.71591 -13.42363 -12.70742 -12.49978 -12.31305 -12.05717 -11.59260 -10.97416 -10.60042 -10.59417 -10.38142 -10.33906 -10.25710 -9.23386 -6.23087 -1.21149 0.62208 0.70091 1.01137 1.31683 1.59478 1.77473 1.98229 2.08923 2.16245 2.28324 2.97261 3.15870 3.74800 3.87454 4.25775 4.31974 4.37492 4.46530 4.54306 4.68316 4.79063 5.02287 5.36927 5.46971 5.59404 5.81768 6.30224 6.67374 6.88887 7.14922 7.84099 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.030107 B = 0.006768 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.783890 B = 4136.364503 C = 5050.992390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.149 3.851 4 C -0.256 4.256 5 C -0.042 4.042 6 N -0.014 5.014 7 O -0.601 6.601 8 O -0.589 6.589 9 C 0.117 3.883 10 N -0.417 5.417 11 C 0.016 3.984 12 N -0.342 5.342 13 C 0.099 3.901 14 H 0.207 0.793 15 C -0.013 4.013 16 N -0.646 5.646 17 Si 1.037 2.963 18 H -0.231 1.231 19 H -0.243 1.243 20 H -0.243 1.243 21 H 0.143 0.857 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.111 0.889 25 H 0.151 0.849 26 H 0.441 0.559 27 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.772 -26.034 0.101 32.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.097 3.903 4 C -0.283 4.283 5 C -0.176 4.176 6 N 0.301 4.699 7 O -0.681 6.681 8 O -0.670 6.670 9 C -0.069 4.069 10 N -0.136 5.136 11 C -0.209 4.209 12 N 0.077 4.923 13 C -0.075 4.075 14 H 0.223 0.777 15 C -0.251 4.251 16 N -0.269 5.269 17 Si 0.848 3.152 18 H -0.153 1.153 19 H -0.166 1.166 20 H -0.166 1.166 21 H 0.161 0.839 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.129 0.871 25 H 0.168 0.832 26 H 0.283 0.717 27 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 19.004 -26.099 0.096 32.285 hybrid contribution -1.996 0.554 -0.005 2.071 sum 17.009 -25.544 0.091 30.689 Atomic orbital electron populations 1.23255 0.76532 1.05617 1.01390 1.85783 1.23383 1.25248 1.88791 1.18630 0.90268 0.83806 0.97641 1.19926 0.99048 0.90065 1.19219 1.20361 0.92606 0.82532 1.22121 1.48274 0.99735 1.01422 1.20518 1.95703 0.93589 1.96445 1.82360 1.95708 1.70075 1.19224 1.81967 1.21130 0.88185 0.95254 1.02318 1.66531 1.37099 0.95558 1.14438 1.16315 0.83854 0.86180 1.34592 1.41464 1.07536 1.09549 1.33702 1.25847 0.81964 1.01660 0.97995 0.77677 1.29703 1.10000 0.91251 0.94109 1.68535 1.47304 1.02834 1.08201 0.84196 0.66022 0.83631 0.81380 1.15257 1.16597 1.16609 0.83909 0.93510 0.93492 0.87079 0.83164 0.71668 0.81460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.83 113.37 1.11 1.86 15 2 O -0.32 -10.38 9.74 -92.08 -0.90 -11.27 15 3 C 0.15 6.14 6.73 22.79 0.15 6.29 15 4 C -0.26 -13.76 8.65 22.54 0.19 -13.57 15 5 C -0.04 -2.61 6.91 36.49 0.25 -2.36 15 6 N -0.01 -1.06 4.98 -46.18 -0.23 -1.29 15 7 O -0.60 -49.84 19.22 3.51 0.07 -49.77 15 8 O -0.59 -47.77 19.17 3.52 0.07 -47.71 15 9 C 0.12 6.08 10.73 84.72 0.91 6.99 15 10 N -0.42 -16.91 9.03 -192.74 -1.74 -18.65 15 11 C 0.02 0.58 7.43 133.20 0.99 1.57 15 12 N -0.34 -7.99 5.28 -185.01 -0.98 -8.96 15 13 C 0.10 1.60 9.94 86.79 0.86 2.46 15 14 H 0.21 3.07 7.10 -2.91 -0.02 3.05 15 15 C -0.01 -0.13 5.69 87.29 0.50 0.37 15 16 N -0.65 -6.88 13.08 23.25 0.30 -6.57 15 17 Si 1.04 4.75 29.65 68.60 2.03 6.79 15 18 H -0.23 -1.38 7.11 99.48 0.71 -0.67 15 19 H -0.24 -1.23 7.11 99.48 0.71 -0.53 15 20 H -0.24 -1.24 7.11 99.48 0.71 -0.53 15 21 H 0.14 2.56 8.14 -2.39 -0.02 2.54 15 22 H 0.05 1.43 7.70 -2.39 -0.02 1.41 15 23 H 0.05 1.44 7.70 -2.38 -0.02 1.42 15 24 H 0.11 6.25 6.05 -2.91 -0.02 6.23 15 25 H 0.15 7.90 7.58 -2.91 -0.02 7.88 15 26 H 0.44 8.93 7.31 -92.71 -0.68 8.25 15 27 H 0.37 2.03 8.26 -92.71 -0.77 1.26 15 Total: -1.00 -107.66 257.22 4.16 -103.50 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.56 Total: 30.33 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 4.97 Total: 3.62 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: -2.64 Total: -35.47 kcal Atomic # 8 Polarization: -107.99 SS G_CDS: -0.76 Total: -108.75 kcal Atomic # 14 Polarization: 4.75 SS G_CDS: 2.03 Total: 6.79 kcal Total: -107.66 4.16 -103.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163178228.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.003 kcal (2) G-P(sol) polarization free energy of solvation -107.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds