Wall clock time and date at job start Sun Mar 29 2020 21:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35890 * 117.00273 * 2 1 4 4 C 1.39288 * 120.39621 * 0.02562 * 3 2 1 5 5 C 1.38292 * 118.44514 * 179.97438 * 4 3 2 6 6 C 1.39197 * 119.15703 * 359.97438 * 5 4 3 7 7 N 1.39006 * 119.63565 * 180.02562 * 6 5 4 8 8 C 1.32716 * 120.00102 * 354.24194 * 7 6 5 9 9 H 1.07999 * 120.00149 * 5.13697 * 8 7 6 10 10 C 1.46775 * 119.99730 * 185.14010 * 8 7 6 11 11 N 1.29336 * 120.00255 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99905 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.46999 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46724 * 119.99798 * 12 10 8 15 15 H 1.48495 * 109.47195 * 240.00021 * 12 10 8 16 16 N 1.32432 * 120.72010 * 0.02562 * 6 5 4 17 17 C 1.31768 * 121.69559 * 359.97438 * 16 6 5 18 18 N 1.48018 * 119.60945 * 180.28333 * 17 16 6 19 19 O 1.31702 * 120.00115 * 179.72638 * 18 17 16 20 20 O 1.31700 * 120.00330 * 359.73044 * 18 17 16 21 21 H 1.09004 * 109.47410 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47313 * 300.00570 * 1 2 3 23 23 H 1.09004 * 109.47042 * 60.00266 * 1 2 3 24 24 H 1.07991 * 120.77186 * 0.02562 * 4 3 2 25 25 H 1.08002 * 120.41610 * 179.97438 * 5 4 3 26 26 H 0.96996 * 119.99644 * 174.23318 * 7 6 5 27 27 H 0.96995 * 120.00391 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2955 2.3842 0.0005 5 6 1.9649 3.5942 0.0011 6 6 3.3569 3.5992 0.0016 7 7 4.0400 4.8098 0.0026 8 6 3.3701 5.9498 -0.1121 9 1 2.2902 5.9429 -0.1229 10 6 4.0971 7.2199 -0.2246 11 7 5.3903 7.2283 -0.2113 12 14 3.1543 8.8244 -0.3869 13 1 1.6960 8.5449 -0.3756 14 1 3.4957 9.7162 0.7504 15 1 3.5219 9.4876 -1.6637 16 7 4.0374 2.4631 0.0011 17 6 3.4314 1.2930 0.0005 18 7 4.2378 0.0518 0.0063 19 8 3.6401 -1.1218 0.0113 20 8 5.5530 0.1209 0.0066 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.2161 2.3497 0.0014 25 1 1.4147 4.5236 0.0011 26 1 5.0061 4.8214 0.0874 27 1 5.8707 8.0676 -0.2860 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181646.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:05 Heat of formation + Delta-G solvation = 41.837774 kcal Electronic energy + Delta-G solvation = -16480.518905 eV Core-core repulsion = 13437.331248 eV Total energy + Delta-G solvation = -3043.187658 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.23583 -38.00767 -37.80987 -35.56018 -33.55272 -32.71308 -31.75426 -29.51149 -27.10863 -25.86363 -24.83166 -22.31617 -21.54825 -18.83997 -18.29800 -17.48963 -17.16553 -16.28980 -15.80387 -15.76989 -14.92527 -14.89425 -14.41224 -13.60057 -13.44279 -13.28161 -12.60701 -12.16963 -11.84453 -11.37319 -11.32180 -10.84001 -10.73368 -10.55896 -10.46922 -10.39632 -9.90352 -9.42516 -9.24297 -9.14636 -7.40832 -7.27602 -3.99733 0.10410 1.77444 1.85573 1.96547 2.80957 2.83756 2.88599 3.53732 3.63543 4.02230 4.42675 4.64958 4.96990 5.17576 5.34908 5.38590 5.57862 5.64831 5.70461 6.23632 6.43571 6.46594 6.59816 6.78225 7.02902 7.45987 7.69673 7.91863 8.33336 8.75316 9.20410 9.83865 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.034452 B = 0.006379 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.521193 B = 4388.650591 C = 5182.175186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.293 6.293 3 C -0.004 4.004 4 C -0.103 4.103 5 C -0.171 4.171 6 C 0.308 3.692 7 N -0.474 5.474 8 C -0.339 4.339 9 H 0.117 0.883 10 C 0.041 3.959 11 N -0.821 5.821 12 Si 0.944 3.056 13 H -0.258 1.258 14 H -0.272 1.272 15 H -0.272 1.272 16 N -0.514 5.514 17 C 0.256 3.744 18 N -0.006 5.006 19 O -0.166 6.166 20 O -0.181 6.181 21 H 0.096 0.904 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.141 0.859 25 H 0.143 0.857 26 H 0.407 0.593 27 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.530 -1.346 0.170 9.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.204 6.204 3 C -0.064 4.064 4 C -0.129 4.129 5 C -0.201 4.201 6 C 0.062 3.938 7 N -0.073 5.073 8 C -0.471 4.471 9 H 0.135 0.865 10 C -0.176 4.176 11 N -0.448 5.448 12 Si 0.768 3.232 13 H -0.181 1.181 14 H -0.197 1.197 15 H -0.197 1.197 16 N -0.243 5.243 17 C 0.032 3.968 18 N 0.469 4.531 19 O -0.358 6.358 20 O -0.372 6.372 21 H 0.114 0.886 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.159 0.841 25 H 0.161 0.839 26 H 0.243 0.757 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.681 -0.477 0.140 8.695 hybrid contribution -0.608 0.617 -0.044 0.867 sum -9.289 0.141 0.096 9.290 Atomic orbital electron populations 1.22962 0.79715 1.03390 1.00604 1.86278 1.19976 1.24697 1.89496 1.18490 0.89166 0.86313 1.12397 1.21150 0.99539 0.90540 1.01690 1.21272 0.93179 0.98298 1.07348 1.17432 0.87995 0.83992 1.04430 1.39648 1.09828 1.01154 1.56719 1.20765 0.93365 0.82412 1.50543 0.86526 1.27090 0.95191 1.00643 0.94714 1.68662 1.08319 1.31064 1.36790 0.85571 0.80089 0.78815 0.78755 1.18130 1.19730 1.19708 1.65328 1.39593 0.95503 1.23826 1.19056 0.82943 0.83983 1.10847 1.50393 1.02878 1.03579 0.96205 1.96229 1.73757 1.10689 1.55080 1.96226 0.89834 1.95955 1.55233 0.88602 0.93292 0.93280 0.84103 0.83944 0.75701 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.83 101.05 0.99 1.34 15 2 O -0.29 -5.23 8.40 -41.63 -0.35 -5.58 15 3 C 0.00 -0.07 6.69 -38.98 -0.26 -0.33 15 4 C -0.10 -1.74 9.13 -39.17 -0.36 -2.09 15 5 C -0.17 -3.20 9.31 -39.21 -0.37 -3.57 15 6 C 0.31 6.81 7.59 -154.97 -1.18 5.64 15 7 N -0.47 -10.85 5.31 -9.93 -0.05 -10.91 15 8 C -0.34 -7.48 9.78 -13.72 -0.13 -7.61 15 9 H 0.12 2.36 5.69 -52.49 -0.30 2.06 15 10 C 0.04 0.89 5.70 -15.15 -0.09 0.80 15 11 N -0.82 -18.79 13.09 56.00 0.73 -18.06 15 12 Si 0.94 16.33 29.65 -169.99 -5.04 11.29 15 13 H -0.26 -4.30 7.11 56.52 0.40 -3.89 15 14 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 15 H -0.27 -4.73 7.11 56.52 0.40 -4.33 15 16 N -0.51 -12.17 10.09 -9.32 -0.09 -12.26 15 17 C 0.26 5.81 7.83 -146.06 -1.14 4.67 15 18 N -0.01 -0.15 4.98 32.97 0.16 0.01 15 19 O -0.17 -3.75 17.86 -39.25 -0.70 -4.45 15 20 O -0.18 -4.41 19.76 -31.57 -0.62 -5.03 15 21 H 0.10 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.05 0.51 7.69 -51.93 -0.40 0.11 15 23 H 0.05 0.51 7.69 -51.93 -0.40 0.11 15 24 H 0.14 1.77 6.44 -52.49 -0.34 1.43 15 25 H 0.14 2.39 5.96 -52.49 -0.31 2.08 15 26 H 0.41 9.79 8.10 -40.82 -0.33 9.46 15 27 H 0.29 6.14 8.26 -40.82 -0.34 5.80 15 LS Contribution 254.30 15.07 3.83 3.83 Total: -1.00 -27.01 254.30 -6.30 -33.31 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -1.63 Total: 9.00 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.53 Total: -1.16 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.75 Total: -41.21 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -1.67 Total: -15.06 kcal Atomic # 14 Polarization: 16.33 SS G_CDS: -5.04 Total: 11.29 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -27.01 -6.30 -33.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181646.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.147 kcal (2) G-P(sol) polarization free energy of solvation -27.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds