Wall clock time and date at job start Sun Mar 29 2020 21:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35890 * 117.00273 * 2 1 4 4 C 1.39288 * 120.39621 * 0.02562 * 3 2 1 5 5 C 1.38292 * 118.44514 * 179.97438 * 4 3 2 6 6 C 1.39197 * 119.15703 * 359.97438 * 5 4 3 7 7 N 1.39006 * 119.63565 * 180.02562 * 6 5 4 8 8 C 1.32716 * 120.00102 * 354.24194 * 7 6 5 9 9 H 1.07999 * 120.00149 * 5.13697 * 8 7 6 10 10 C 1.46775 * 119.99730 * 185.14010 * 8 7 6 11 11 N 1.29336 * 120.00255 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99905 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.46999 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46724 * 119.99798 * 12 10 8 15 15 H 1.48495 * 109.47195 * 240.00021 * 12 10 8 16 16 N 1.32432 * 120.72010 * 0.02562 * 6 5 4 17 17 C 1.31768 * 121.69559 * 359.97438 * 16 6 5 18 18 N 1.48018 * 119.60945 * 180.28333 * 17 16 6 19 19 O 1.31702 * 120.00115 * 179.72638 * 18 17 16 20 20 O 1.31700 * 120.00330 * 359.73044 * 18 17 16 21 21 H 1.09004 * 109.47410 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47313 * 300.00570 * 1 2 3 23 23 H 1.09004 * 109.47042 * 60.00266 * 1 2 3 24 24 H 1.07991 * 120.77186 * 0.02562 * 4 3 2 25 25 H 1.08002 * 120.41610 * 179.97438 * 5 4 3 26 26 H 0.96996 * 119.99644 * 174.23318 * 7 6 5 27 27 H 0.96995 * 120.00391 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2955 2.3842 0.0005 5 6 1.9649 3.5942 0.0011 6 6 3.3569 3.5992 0.0016 7 7 4.0400 4.8098 0.0026 8 6 3.3701 5.9498 -0.1121 9 1 2.2902 5.9429 -0.1229 10 6 4.0971 7.2199 -0.2246 11 7 5.3903 7.2283 -0.2113 12 14 3.1543 8.8244 -0.3869 13 1 1.6960 8.5449 -0.3756 14 1 3.4957 9.7162 0.7504 15 1 3.5219 9.4876 -1.6637 16 7 4.0374 2.4631 0.0011 17 6 3.4314 1.2930 0.0005 18 7 4.2378 0.0518 0.0063 19 8 3.6401 -1.1218 0.0113 20 8 5.5530 0.1209 0.0066 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.2161 2.3497 0.0014 25 1 1.4147 4.5236 0.0011 26 1 5.0061 4.8214 0.0874 27 1 5.8707 8.0676 -0.2860 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181646.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:04 Heat of formation + Delta-G solvation = 25.533490 kcal Electronic energy + Delta-G solvation = -16481.225912 eV Core-core repulsion = 13437.331248 eV Total energy + Delta-G solvation = -3043.894664 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.84067 -39.59178 -39.45013 -37.13845 -35.31518 -34.29128 -33.31893 -31.09277 -28.33016 -27.49454 -26.38602 -23.88691 -23.13409 -20.45495 -19.90627 -19.13357 -18.66143 -17.93075 -17.37141 -17.36821 -16.41369 -16.32092 -15.84792 -15.10365 -15.01284 -14.59948 -14.01557 -13.59867 -13.26824 -12.67962 -12.61164 -12.37621 -12.26063 -12.10690 -12.00622 -11.89961 -11.73115 -10.98982 -10.74865 -10.70392 -9.02633 -8.80425 -5.65788 -1.64275 0.11893 0.31235 0.34644 1.45472 1.47697 1.60217 2.12606 2.25415 2.45267 2.82701 3.04997 3.52895 3.72831 3.88714 4.17392 4.46827 4.52487 4.73539 4.77935 4.84033 4.91490 5.06018 5.24586 5.44251 5.72486 6.27204 6.34445 6.75540 7.10687 7.61585 8.34279 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.034452 B = 0.006379 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.521193 B = 4388.650591 C = 5182.175186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.310 6.310 3 C 0.049 3.951 4 C -0.096 4.096 5 C -0.136 4.136 6 C 0.302 3.698 7 N -0.497 5.497 8 C -0.368 4.368 9 H 0.136 0.864 10 C -0.003 4.003 11 N -0.870 5.870 12 Si 1.013 2.987 13 H -0.240 1.240 14 H -0.275 1.275 15 H -0.277 1.277 16 N -0.570 5.570 17 C 0.206 3.794 18 N -0.003 5.003 19 O -0.145 6.145 20 O -0.258 6.258 21 H 0.121 0.879 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.203 0.797 25 H 0.173 0.827 26 H 0.392 0.608 27 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.369 -1.333 0.131 14.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.221 6.221 3 C -0.012 4.012 4 C -0.121 4.121 5 C -0.165 4.165 6 C 0.056 3.944 7 N -0.100 5.100 8 C -0.499 4.499 9 H 0.153 0.847 10 C -0.215 4.215 11 N -0.500 5.500 12 Si 0.833 3.167 13 H -0.162 1.162 14 H -0.201 1.201 15 H -0.202 1.202 16 N -0.302 5.302 17 C -0.013 4.013 18 N 0.463 4.537 19 O -0.345 6.345 20 O -0.430 6.430 21 H 0.139 0.861 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.219 0.781 25 H 0.190 0.810 26 H 0.225 0.775 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.448 -0.542 0.103 13.459 hybrid contribution 0.430 0.290 -0.016 0.519 sum -13.018 -0.252 0.087 13.021 Atomic orbital electron populations 1.23526 0.75710 1.06129 1.02935 1.86306 1.24014 1.23824 1.87946 1.18933 0.88252 0.88170 1.05830 1.21780 1.02117 0.88184 1.00063 1.21831 0.91733 1.00531 1.02359 1.18019 0.89496 0.83581 1.03284 1.39755 1.09179 1.01820 1.59207 1.21168 0.94163 0.82456 1.52092 0.84688 1.28053 0.95835 1.03519 0.94085 1.68759 1.10011 1.31811 1.39441 0.84568 0.79585 0.74532 0.77987 1.16239 1.20068 1.20219 1.65166 1.40887 0.96258 1.27899 1.19422 0.84040 0.83657 1.14192 1.50633 1.02909 1.04019 0.96138 1.96156 1.73527 1.11519 1.53280 1.96227 0.90590 1.96093 1.60104 0.86118 0.90778 0.90799 0.78060 0.80954 0.77489 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.83 113.37 1.11 1.30 15 2 O -0.31 -9.59 8.40 -71.06 -0.60 -10.19 15 3 C 0.05 1.74 6.69 22.66 0.15 1.89 15 4 C -0.10 -2.65 9.13 22.54 0.21 -2.45 15 5 C -0.14 -4.53 9.31 22.51 0.21 -4.32 15 6 C 0.30 13.21 7.59 133.07 1.01 14.22 15 7 N -0.50 -23.30 5.31 -185.33 -0.98 -24.28 15 8 C -0.37 -16.10 9.78 86.79 0.85 -15.26 15 9 H 0.14 5.10 5.69 -2.91 -0.02 5.08 15 10 C 0.00 -0.13 5.70 87.29 0.50 0.37 15 11 N -0.87 -41.57 13.09 23.26 0.30 -41.26 15 12 Si 1.01 32.91 29.65 68.60 2.03 34.94 15 13 H -0.24 -6.96 7.11 99.48 0.71 -6.26 15 14 H -0.28 -8.95 7.11 99.48 0.71 -8.24 15 15 H -0.28 -9.07 7.11 99.48 0.71 -8.36 15 16 N -0.57 -27.64 10.09 -183.39 -1.85 -29.49 15 17 C 0.21 9.32 7.83 129.81 1.02 10.33 15 18 N 0.00 -0.14 4.98 -49.61 -0.25 -0.39 15 19 O -0.14 -6.49 17.86 10.86 0.19 -6.29 15 20 O -0.26 -13.52 19.76 3.51 0.07 -13.45 15 21 H 0.12 1.53 8.14 -2.38 -0.02 1.51 15 22 H 0.07 0.96 7.69 -2.39 -0.02 0.94 15 23 H 0.07 0.96 7.69 -2.38 -0.02 0.94 15 24 H 0.20 3.22 6.44 -2.91 -0.02 3.20 15 25 H 0.17 4.80 5.96 -2.91 -0.02 4.79 15 26 H 0.39 20.09 8.10 -92.71 -0.75 19.34 15 27 H 0.30 12.93 8.26 -92.71 -0.77 12.16 15 Total: -1.00 -63.68 254.30 4.47 -59.21 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.49 Total: 25.11 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 5.05 Total: 6.09 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -2.78 Total: -95.42 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.33 Total: -29.93 kcal Atomic # 14 Polarization: 32.91 SS G_CDS: 2.03 Total: 34.94 kcal Total: -63.68 4.47 -59.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181646.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.740 kcal (2) G-P(sol) polarization free energy of solvation -63.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds