Wall clock time and date at job start Sun Mar 29 2020 21:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31530 * 1 3 3 Si 1.86803 * 119.99902 * 2 1 4 4 H 1.48498 * 109.47018 * 240.00038 * 3 2 1 5 5 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46906 * 120.00300 * 3 2 1 7 7 C 1.38855 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00394 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.38525 * 119.99874 * 179.97438 * 9 7 2 11 11 N 1.33056 * 120.52734 * 359.97438 * 10 9 7 12 12 C 1.31830 * 120.67036 * 180.02562 * 11 10 9 13 13 Cl 1.73603 * 119.09212 * 180.02562 * 12 11 10 14 14 N 1.31957 * 121.81420 * 0.02562 * 12 11 10 15 15 C 1.32517 * 121.00531 * 359.97438 * 14 12 11 16 16 C 1.38178 * 119.21810 * 359.71708 * 15 14 12 17 17 C 1.50697 * 120.82609 * 180.27745 * 16 15 14 18 18 C 1.52994 * 117.50111 * 8.91780 * 17 16 15 19 19 C 1.52998 * 117.49849 * 300.29092 * 17 16 15 20 20 H 0.97000 * 120.00388 * 359.97438 * 1 2 3 21 21 H 0.97005 * 120.00247 * 359.97438 * 9 7 2 22 22 H 1.08002 * 120.38909 * 179.97438 * 15 14 12 23 23 H 1.09007 * 115.54660 * 154.62709 * 17 16 15 24 24 H 1.09004 * 117.49815 * 359.97438 * 18 17 16 25 25 H 1.09000 * 117.49675 * 145.02117 * 18 17 16 26 26 H 1.08998 * 117.50007 * 214.97457 * 19 17 16 27 27 H 1.08996 * 117.49703 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1031 1.6964 1.2125 7 6 2.0096 -1.2025 0.0005 8 1 3.0896 -1.2025 0.0001 9 7 1.3249 -2.3883 0.0005 10 6 2.0176 -3.5880 0.0005 11 7 3.3481 -3.6002 0.0000 12 6 4.0101 -4.7403 -0.0005 13 17 5.7458 -4.7084 -0.0005 14 7 3.3897 -5.9049 -0.0010 15 6 2.0663 -5.9734 -0.0005 16 6 1.3304 -4.8039 0.0065 17 6 -0.1761 -4.8396 0.0135 18 6 -0.8497 -6.1972 0.2230 19 6 -0.8717 -5.5371 -1.1571 20 1 -0.4851 0.8400 0.0004 21 1 0.3549 -2.3884 0.0005 22 1 1.5688 -6.9320 -0.0014 23 1 -0.6651 -3.9636 0.4399 24 1 -0.2032 -7.0648 0.3553 25 1 -1.7820 -6.2147 0.7874 26 1 -1.8186 -5.1204 -1.5006 27 1 -0.2397 -5.9705 -1.9321 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182090.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:38 Heat of formation + Delta-G solvation = 63.753562 kcal Electronic energy + Delta-G solvation = -14414.424397 eV Core-core repulsion = 11812.896244 eV Total energy + Delta-G solvation = -2601.528153 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 239.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.04411 -36.92517 -36.14995 -35.68821 -32.69809 -31.34418 -29.46825 -25.37921 -24.17146 -22.43845 -21.88276 -20.33509 -18.52432 -17.53858 -16.29446 -15.35239 -14.96407 -14.53621 -14.32313 -13.94858 -13.71532 -12.89700 -12.12462 -11.98524 -11.76657 -11.35519 -11.20421 -10.84972 -10.81033 -10.74109 -10.51964 -10.37664 -10.16903 -9.78448 -9.41422 -8.65661 -8.15965 -7.45879 -6.82717 -4.02170 1.79887 2.26251 2.26359 3.08815 3.11846 3.12581 3.89239 4.14109 4.56420 4.62405 4.99446 5.05257 5.15580 5.20888 5.39702 5.71067 5.86046 5.89338 6.10809 6.13567 6.27530 6.36919 6.72913 7.03202 7.21958 7.56227 7.95668 8.49840 8.89876 8.96844 9.41233 10.31710 Molecular weight = 239.05amu Principal moments of inertia in cm(-1) A = 0.017176 B = 0.009838 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.807016 B = 2845.382432 C = 4396.636221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.025 3.975 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.290 4.290 8 H 0.118 0.882 9 N -0.495 5.495 10 C 0.381 3.619 11 N -0.568 5.568 12 C 0.407 3.593 13 Cl -0.019 7.019 14 N -0.604 5.604 15 C 0.177 3.823 16 C -0.257 4.257 17 C -0.082 4.082 18 C -0.180 4.180 19 C -0.176 4.176 20 H 0.281 0.719 21 H 0.412 0.588 22 H 0.151 0.849 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 -6.494 -0.272 6.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.181 4.181 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.421 4.421 8 H 0.136 0.864 9 N -0.101 5.101 10 C 0.131 3.869 11 N -0.299 5.299 12 C 0.109 3.891 13 Cl 0.008 6.992 14 N -0.333 5.333 15 C 0.021 3.979 16 C -0.272 4.272 17 C -0.102 4.102 18 C -0.217 4.217 19 C -0.213 4.213 20 H 0.091 0.909 21 H 0.250 0.750 22 H 0.168 0.832 23 H 0.123 0.877 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.379 -5.958 -0.273 5.977 hybrid contribution -0.835 0.887 0.008 1.218 sum -0.456 -5.071 -0.265 5.099 Atomic orbital electron populations 1.69638 1.06258 1.29547 1.46250 1.25516 0.95811 1.00584 0.96227 0.85720 0.78817 0.79120 0.79645 1.19305 1.20598 1.19301 1.20104 0.94222 0.81745 1.46062 0.86385 1.41048 1.08470 1.01999 1.58539 1.17704 0.86763 0.85936 0.96491 1.67127 1.07499 1.29231 1.26056 1.22136 0.87539 0.85519 0.93933 1.98342 1.05797 1.98512 1.96534 1.67703 1.10185 1.27412 1.28014 1.22146 0.87988 0.96800 0.91013 1.19646 0.94288 0.93803 1.19461 1.20458 0.90695 0.96299 1.02735 1.22984 1.02351 0.96408 0.99986 1.23024 1.02176 1.04390 0.91704 0.90887 0.75005 0.83216 0.87683 0.88743 0.88892 0.88930 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.16 13.05 55.49 0.72 -21.43 15 2 C 0.02 0.60 5.50 -17.45 -0.10 0.51 15 3 Si 0.94 19.45 29.55 -169.99 -5.02 14.42 15 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 5 H -0.28 -5.68 7.11 56.52 0.40 -5.27 15 6 H -0.27 -5.52 7.11 56.52 0.40 -5.11 15 7 C -0.29 -7.41 9.72 -15.05 -0.15 -7.56 15 8 H 0.12 3.10 7.11 -52.49 -0.37 2.73 15 9 N -0.49 -11.95 5.36 -10.99 -0.06 -12.01 15 10 C 0.38 8.83 7.45 -154.72 -1.15 7.67 15 11 N -0.57 -13.56 9.21 -10.85 -0.10 -13.66 15 12 C 0.41 8.90 8.18 -91.98 -0.75 8.15 15 13 Cl -0.02 -0.36 29.27 -51.86 -1.52 -1.88 15 14 N -0.60 -12.53 10.40 -11.71 -0.12 -12.66 15 15 C 0.18 3.32 10.56 -17.28 -0.18 3.14 15 16 C -0.26 -5.09 5.66 -104.11 -0.59 -5.68 15 17 C -0.08 -1.36 5.59 -91.78 -0.51 -1.88 15 18 C -0.18 -2.35 9.88 -26.73 -0.26 -2.62 15 19 C -0.18 -2.46 10.17 -26.73 -0.27 -2.73 15 20 H 0.28 6.66 8.31 -40.82 -0.34 6.32 15 21 H 0.41 9.65 6.08 -40.82 -0.25 9.40 15 22 H 0.15 2.28 6.16 -52.49 -0.32 1.95 15 23 H 0.11 1.82 6.86 -51.92 -0.36 1.47 15 24 H 0.09 1.14 6.27 -51.93 -0.33 0.81 15 25 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 26 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 LS Contribution 256.09 15.07 3.86 3.86 Total: -1.00 -26.65 256.09 -8.24 -34.89 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -2.03 Total: 9.46 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -3.97 Total: -1.00 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.44 Total: -59.75 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.52 Total: -1.88 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -26.65 -8.24 -34.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182090.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.639 kcal (2) G-P(sol) polarization free energy of solvation -26.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds