Wall clock time and date at job start Sun Mar 29 2020 21:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31530 * 1 3 3 Si 1.86803 * 119.99902 * 2 1 4 4 H 1.48498 * 109.47018 * 240.00038 * 3 2 1 5 5 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46906 * 120.00300 * 3 2 1 7 7 C 1.38855 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00394 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.38525 * 119.99874 * 179.97438 * 9 7 2 11 11 N 1.33056 * 120.52734 * 359.97438 * 10 9 7 12 12 C 1.31830 * 120.67036 * 180.02562 * 11 10 9 13 13 Cl 1.73603 * 119.09212 * 180.02562 * 12 11 10 14 14 N 1.31957 * 121.81420 * 0.02562 * 12 11 10 15 15 C 1.32517 * 121.00531 * 359.97438 * 14 12 11 16 16 C 1.38178 * 119.21810 * 359.71708 * 15 14 12 17 17 C 1.50697 * 120.82609 * 180.27745 * 16 15 14 18 18 C 1.52994 * 117.50111 * 8.91780 * 17 16 15 19 19 C 1.52998 * 117.49849 * 300.29092 * 17 16 15 20 20 H 0.97000 * 120.00388 * 359.97438 * 1 2 3 21 21 H 0.97005 * 120.00247 * 359.97438 * 9 7 2 22 22 H 1.08002 * 120.38909 * 179.97438 * 15 14 12 23 23 H 1.09007 * 115.54660 * 154.62709 * 17 16 15 24 24 H 1.09004 * 117.49815 * 359.97438 * 18 17 16 25 25 H 1.09000 * 117.49675 * 145.02117 * 18 17 16 26 26 H 1.08998 * 117.50007 * 214.97457 * 19 17 16 27 27 H 1.08996 * 117.49703 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1031 1.6964 1.2125 7 6 2.0096 -1.2025 0.0005 8 1 3.0896 -1.2025 0.0001 9 7 1.3249 -2.3883 0.0005 10 6 2.0176 -3.5880 0.0005 11 7 3.3481 -3.6002 0.0000 12 6 4.0101 -4.7403 -0.0005 13 17 5.7458 -4.7084 -0.0005 14 7 3.3897 -5.9049 -0.0010 15 6 2.0663 -5.9734 -0.0005 16 6 1.3304 -4.8039 0.0065 17 6 -0.1761 -4.8396 0.0135 18 6 -0.8497 -6.1972 0.2230 19 6 -0.8717 -5.5371 -1.1571 20 1 -0.4851 0.8400 0.0004 21 1 0.3549 -2.3884 0.0005 22 1 1.5688 -6.9320 -0.0014 23 1 -0.6651 -3.9636 0.4399 24 1 -0.2032 -7.0648 0.3553 25 1 -1.7820 -6.2147 0.7874 26 1 -1.8186 -5.1204 -1.5006 27 1 -0.2397 -5.9705 -1.9321 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182090.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:38 Heat of formation + Delta-G solvation = 49.295436 kcal Electronic energy + Delta-G solvation = -14415.051349 eV Core-core repulsion = 11812.896244 eV Total energy + Delta-G solvation = -2602.155104 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 239.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.70475 -38.30032 -37.70936 -37.34652 -34.47446 -33.04393 -31.11490 -27.16227 -25.73027 -24.02974 -23.07286 -21.73718 -20.29770 -19.20908 -17.98083 -16.78050 -16.55697 -16.15605 -16.04408 -15.39815 -15.28006 -14.46582 -13.72347 -13.56532 -13.37389 -12.89930 -12.61990 -12.46748 -12.33205 -12.22157 -12.14217 -11.71160 -11.53183 -11.22388 -11.18488 -10.32530 -9.87205 -9.11610 -8.63254 -5.91732 0.16810 0.57775 0.63798 1.40396 1.48064 1.50965 2.20512 2.71425 2.89089 3.02392 3.33100 3.66431 3.74894 3.96742 4.18638 4.24411 4.37824 4.49825 4.84103 4.92853 5.06125 5.26859 5.31073 5.33491 5.45076 5.80768 6.22579 6.68311 7.14774 7.17062 7.65030 8.52340 Molecular weight = 239.05amu Principal moments of inertia in cm(-1) A = 0.017176 B = 0.009838 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.807016 B = 2845.382432 C = 4396.636221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.013 4.013 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.318 4.318 8 H 0.101 0.899 9 N -0.516 5.516 10 C 0.372 3.628 11 N -0.599 5.599 12 C 0.388 3.612 13 Cl 0.004 6.996 14 N -0.597 5.597 15 C 0.175 3.825 16 C -0.247 4.247 17 C -0.119 4.119 18 C -0.149 4.149 19 C -0.166 4.166 20 H 0.283 0.717 21 H 0.410 0.590 22 H 0.195 0.805 23 H 0.090 0.910 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.938 -8.244 -0.322 8.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.215 4.215 3 Si 0.823 3.177 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.449 4.449 8 H 0.119 0.881 9 N -0.125 5.125 10 C 0.124 3.876 11 N -0.331 5.331 12 C 0.091 3.909 13 Cl 0.032 6.968 14 N -0.326 5.326 15 C 0.019 3.981 16 C -0.261 4.261 17 C -0.139 4.139 18 C -0.186 4.186 19 C -0.203 4.203 20 H 0.093 0.907 21 H 0.249 0.751 22 H 0.211 0.789 23 H 0.109 0.891 24 H 0.130 0.870 25 H 0.132 0.868 26 H 0.123 0.877 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.021 -7.758 -0.324 7.765 hybrid contribution -0.635 1.137 0.019 1.303 sum -0.656 -6.621 -0.304 6.660 Atomic orbital electron populations 1.69701 1.07116 1.30130 1.47868 1.26220 0.96576 1.02896 0.95820 0.84863 0.77714 0.75831 0.79323 1.19313 1.19610 1.19299 1.20054 0.93696 0.83008 1.48112 0.88076 1.40956 1.08239 1.01939 1.61369 1.18300 0.87126 0.87017 0.95191 1.67122 1.08332 1.30619 1.27071 1.22524 0.88840 0.85413 0.94127 1.98340 1.03623 1.98476 1.96396 1.67833 1.11292 1.26745 1.26692 1.22851 0.87304 0.98189 0.89744 1.20029 0.96304 0.92720 1.17050 1.20429 0.88747 0.98346 1.06329 1.23142 1.02555 0.94151 0.98761 1.23097 1.02066 1.03315 0.91838 0.90738 0.75134 0.78877 0.89147 0.87031 0.86818 0.87720 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.00 13.05 21.65 0.28 -46.72 15 2 C -0.01 -0.66 5.50 84.89 0.47 -0.19 15 3 Si 1.00 40.65 29.55 68.60 2.03 42.68 15 4 H -0.27 -10.76 7.11 99.48 0.71 -10.06 15 5 H -0.27 -10.49 7.11 99.48 0.71 -9.78 15 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 7 C -0.32 -16.88 9.72 84.04 0.82 -16.06 15 8 H 0.10 5.56 7.11 -2.91 -0.02 5.54 15 9 N -0.52 -25.77 5.36 -188.67 -1.01 -26.78 15 10 C 0.37 17.45 7.45 133.16 0.99 18.44 15 11 N -0.60 -28.90 9.21 -188.24 -1.73 -30.63 15 12 C 0.39 16.69 8.18 180.82 1.48 18.17 15 13 Cl 0.00 0.15 29.27 -2.72 -0.08 0.07 15 14 N -0.60 -23.58 10.40 -190.96 -1.99 -25.57 15 15 C 0.18 6.09 10.56 84.58 0.89 6.98 15 16 C -0.25 -9.47 5.66 -19.53 -0.11 -9.58 15 17 C -0.12 -3.74 5.59 -11.54 -0.06 -3.80 15 18 C -0.15 -3.29 9.88 30.59 0.30 -2.98 15 19 C -0.17 -4.15 10.17 30.60 0.31 -3.84 15 20 H 0.28 13.68 8.31 -92.71 -0.77 12.91 15 21 H 0.41 20.03 6.08 -92.70 -0.56 19.47 15 22 H 0.19 4.93 6.16 -2.91 -0.02 4.91 15 23 H 0.09 3.14 6.86 -2.38 -0.02 3.12 15 24 H 0.11 2.09 6.27 -2.39 -0.01 2.07 15 25 H 0.11 2.10 8.14 -2.39 -0.02 2.08 15 26 H 0.10 2.38 8.14 -2.39 -0.02 2.36 15 27 H 0.09 2.34 8.14 -2.39 -0.02 2.32 15 Total: -1.00 -58.17 256.09 3.24 -54.93 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.66 Total: 24.89 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 5.09 Total: 7.14 kcal Atomic # 7 Polarization: -125.25 SS G_CDS: -4.45 Total: -129.70 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -0.08 Total: 0.07 kcal Total: -58.17 3.24 -54.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182090.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.226 kcal (2) G-P(sol) polarization free energy of solvation -58.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds