Wall clock time and date at job start Sun Mar 29 2020 22:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39235 * 121.08121 * 118.04107 * 3 2 1 5 5 N 1.31940 * 121.43016 * 179.72762 * 4 3 2 6 6 C 1.32131 * 123.57308 * 359.97438 * 5 4 3 7 7 N 1.37755 * 119.62854 * 180.02562 * 6 5 4 8 8 C 1.36721 * 120.00291 * 0.02562 * 7 6 5 9 9 H 1.07999 * 120.00035 * 359.97438 * 8 7 6 10 10 C 1.38950 * 119.99855 * 180.02562 * 8 7 6 11 11 N 1.31457 * 120.00345 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99887 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47332 * 89.99716 * 12 10 8 14 14 H 1.48502 * 109.47011 * 209.99818 * 12 10 8 15 15 H 1.48500 * 109.46995 * 329.99581 * 12 10 8 16 16 C 1.41432 * 120.73938 * 0.02761 * 6 5 4 17 17 C 1.40005 * 122.10003 * 179.97438 * 16 6 5 18 18 C 1.36430 * 119.52110 * 180.02562 * 17 16 6 19 19 C 1.39149 * 121.03817 * 0.02562 * 18 17 16 20 20 C 1.36548 * 120.88065 * 359.97438 * 19 18 17 21 21 C 1.39599 * 119.43235 * 359.97438 * 20 19 18 22 22 H 1.07999 * 119.28142 * 359.74246 * 4 3 2 23 23 H 0.97004 * 119.99822 * 180.02562 * 7 6 5 24 24 H 0.96996 * 119.99865 * 179.97438 * 11 10 8 25 25 H 1.08004 * 120.24174 * 0.04158 * 17 16 6 26 26 H 1.07995 * 119.47972 * 180.02562 * 18 17 16 27 27 H 1.07997 * 119.55897 * 180.02562 * 19 18 17 28 28 H 1.08000 * 120.28383 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2866 0.5615 -1.0525 5 7 4.6059 0.5706 -1.0571 6 6 5.3435 0.0610 -0.0864 7 7 6.7172 0.1152 -0.1747 8 6 7.3100 0.6945 -1.2620 9 1 6.7014 1.1092 -2.0520 10 6 8.6956 0.7487 -1.3513 11 7 9.4364 0.2435 -0.3900 12 14 9.5056 1.5396 -2.8372 13 1 9.7140 2.9864 -2.5759 14 1 10.8159 0.8887 -3.0915 15 1 8.6308 1.3721 -4.0254 16 6 4.7385 -0.5396 1.0421 17 6 5.4922 -1.0887 2.0863 18 6 4.8537 -1.6559 3.1502 19 6 3.4643 -1.6979 3.2140 20 6 2.7005 -1.1713 2.2121 21 6 3.3246 -0.5831 1.1106 22 1 2.7523 0.9988 -1.8830 23 1 7.2638 -0.2576 0.5346 24 1 10.4037 0.2810 -0.4526 25 1 6.5714 -1.0633 2.0501 26 1 5.4358 -2.0789 3.9556 27 1 2.9837 -2.1524 4.0677 28 1 1.6228 -1.2088 2.2718 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182330.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:44 Heat of formation + Delta-G solvation = 74.954137 kcal Electronic energy + Delta-G solvation = -15441.928655 eV Core-core repulsion = 12843.319045 eV Total energy + Delta-G solvation = -2598.609610 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.89892 -36.99277 -36.10532 -35.08952 -32.85186 -30.81042 -30.37741 -28.46963 -25.61699 -23.35594 -22.71422 -21.55953 -18.86957 -18.17957 -17.33303 -16.24518 -15.98231 -14.98453 -14.40858 -14.02154 -13.90339 -13.75037 -13.16734 -12.70503 -12.64136 -12.23296 -12.14998 -11.96039 -11.69737 -11.46058 -11.27055 -10.91768 -10.76651 -10.50076 -10.48832 -9.40872 -8.69320 -8.43945 -8.39080 -7.33010 -6.90461 -4.27765 1.06447 1.78782 2.29142 2.85790 2.87472 2.93560 3.56288 3.58687 3.70490 4.05047 4.33526 4.45655 5.00359 5.08999 5.25367 5.35295 5.46506 5.55927 5.80484 5.92861 5.99966 6.33019 6.50333 6.64806 6.70573 6.77778 6.97564 7.03296 7.11438 7.38549 7.60088 8.00275 8.44306 8.53218 8.57072 9.35094 9.77988 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.028537 B = 0.007066 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.962978 B = 3961.738071 C = 4932.855932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.301 3.699 3 C -0.289 4.289 4 C 0.251 3.749 5 N -0.585 5.585 6 C 0.334 3.666 7 N -0.457 5.457 8 C -0.262 4.262 9 H 0.134 0.866 10 C 0.024 3.976 11 N -0.848 5.848 12 Si 0.951 3.049 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.257 1.257 16 C -0.129 4.129 17 C -0.082 4.082 18 C -0.166 4.166 19 C -0.090 4.090 20 C -0.153 4.153 21 C 0.073 3.927 22 H 0.140 0.860 23 H 0.411 0.589 24 H 0.292 0.708 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.681 -1.335 2.484 2.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.009 4.009 3 C -0.306 4.306 4 C 0.082 3.918 5 N -0.307 5.307 6 C 0.083 3.917 7 N -0.052 5.052 8 C -0.395 4.395 9 H 0.152 0.848 10 C -0.187 4.187 11 N -0.479 5.479 12 Si 0.775 3.225 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.181 1.181 16 C -0.134 4.134 17 C -0.103 4.103 18 C -0.185 4.185 19 C -0.110 4.110 20 C -0.173 4.173 21 C 0.068 3.932 22 H 0.158 0.842 23 H 0.250 0.750 24 H 0.102 0.898 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.058 -0.940 1.738 1.976 hybrid contribution 0.790 -0.282 0.557 1.006 sum 0.847 -1.222 2.294 2.734 Atomic orbital electron populations 1.81112 1.12390 1.14896 1.10481 1.25413 0.92167 0.91264 0.92056 1.16723 0.84031 1.26739 1.03094 1.21903 0.88303 0.88319 0.93266 1.66546 1.06281 1.28946 1.28945 1.17970 0.84850 0.97924 0.90928 1.41297 1.02464 1.42152 1.19245 1.20613 0.90405 1.29875 0.98566 0.84832 1.25895 0.96442 0.96440 0.99906 1.69610 1.08196 1.38111 1.31952 0.85480 0.78435 0.79139 0.79470 1.19232 1.20031 1.18096 1.18131 0.93241 1.05633 0.96441 1.20727 0.98921 0.97205 0.93461 1.20491 0.94384 1.04380 0.99226 1.20753 0.93847 0.98395 0.97973 1.20575 0.99234 1.02692 0.94756 1.18323 0.90789 0.92069 0.92009 0.84229 0.75032 0.89764 0.86471 0.86825 0.86890 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -10.38 18.54 41.84 0.78 -9.60 15 2 C 0.30 5.84 14.41 -22.47 -0.32 5.52 15 3 C -0.29 -5.59 5.94 -104.27 -0.62 -6.21 15 4 C 0.25 4.77 10.91 -17.13 -0.19 4.58 15 5 N -0.59 -12.42 8.91 -11.92 -0.11 -12.53 15 6 C 0.33 7.08 7.47 -155.57 -1.16 5.92 15 7 N -0.46 -9.82 5.32 -10.95 -0.06 -9.88 15 8 C -0.26 -5.83 9.69 -15.11 -0.15 -5.97 15 9 H 0.13 3.01 7.05 -52.49 -0.37 2.64 15 10 C 0.02 0.51 5.50 -17.45 -0.10 0.41 15 11 N -0.85 -18.57 13.05 55.50 0.72 -17.85 15 12 Si 0.95 16.72 29.55 -169.99 -5.02 11.70 15 13 H -0.27 -4.70 7.11 56.52 0.40 -4.29 15 14 H -0.28 -4.79 7.11 56.52 0.40 -4.39 15 15 H -0.26 -4.51 7.11 56.52 0.40 -4.11 15 16 C -0.13 -2.54 5.75 -106.73 -0.61 -3.15 15 17 C -0.08 -1.42 9.51 -39.57 -0.38 -1.80 15 18 C -0.17 -2.54 9.95 -39.90 -0.40 -2.94 15 19 C -0.09 -1.38 9.96 -39.85 -0.40 -1.78 15 20 C -0.15 -2.66 9.49 -39.68 -0.38 -3.03 15 21 C 0.07 1.42 5.90 -104.76 -0.62 0.80 15 22 H 0.14 2.25 8.06 -52.49 -0.42 1.83 15 23 H 0.41 8.50 5.97 -40.82 -0.24 8.25 15 24 H 0.29 5.93 8.31 -40.82 -0.34 5.59 15 25 H 0.12 1.89 6.47 -52.48 -0.34 1.55 15 26 H 0.11 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.11 1.39 8.06 -52.49 -0.42 0.97 15 28 H 0.11 1.92 7.42 -52.49 -0.39 1.54 15 LS Contribution 260.55 15.07 3.93 3.93 Total: -1.00 -24.48 260.55 -6.82 -31.30 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -1.75 Total: 10.59 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -5.31 Total: -7.65 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 1.34 Total: -49.86 kcal Atomic # 14 Polarization: 16.72 SS G_CDS: -5.02 Total: 11.70 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -24.48 -6.82 -31.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182330.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.255 kcal (2) G-P(sol) polarization free energy of solvation -24.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds