Wall clock time and date at job start Sun Mar 29 2020 21:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86801 * 120.00018 * 2 1 4 4 H 1.48506 * 109.46905 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47004 * 300.00163 * 3 2 1 6 6 H 1.48499 * 109.47119 * 60.00320 * 3 2 1 7 7 C 1.38818 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00162 * 179.97438 * 7 2 1 9 9 N 1.36894 * 119.99668 * 359.97438 * 7 2 1 10 10 C 1.38918 * 119.99634 * 180.02562 * 9 7 2 11 11 N 1.32656 * 120.25420 * 359.93704 * 10 9 7 12 12 N 1.28353 * 122.11753 * 180.02562 * 11 10 9 13 13 C 1.32055 * 122.32688 * 0.02756 * 12 11 10 14 14 Cl 1.73597 * 120.10355 * 180.02562 * 13 12 11 15 15 C 1.38833 * 119.79951 * 359.97438 * 13 12 11 16 16 C 1.38286 * 118.17309 * 0.02562 * 15 13 12 17 17 C 1.50945 * 109.87105 * 179.97438 * 16 15 13 18 18 C 1.54454 * 105.15966 * 343.04780 * 17 16 15 19 19 C 1.51280 * 131.91908 * 179.80384 * 15 13 12 20 20 H 0.97003 * 120.00162 * 359.97438 * 1 2 3 21 21 H 0.96997 * 120.00807 * 0.02562 * 9 7 2 22 22 H 1.09005 * 110.30256 * 224.13027 * 17 16 15 23 23 H 1.08994 * 110.30952 * 101.97597 * 17 16 15 24 24 H 1.09002 * 110.81305 * 144.20664 * 18 17 16 25 25 H 1.08998 * 110.81777 * 267.53788 * 18 17 16 26 26 H 1.09008 * 110.25403 * 78.06776 * 19 15 13 27 27 H 1.08999 * 110.49617 * 315.81928 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7098 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0098 -1.2022 -0.0005 8 1 3.0897 -1.2023 -0.0010 9 7 1.3252 -2.3877 -0.0005 10 6 2.0198 -3.5908 -0.0005 11 7 3.3464 -3.5967 -0.0018 12 7 4.0239 -4.6868 -0.0023 13 6 3.4490 -5.8756 -0.0022 14 17 4.4219 -7.3133 -0.0023 15 6 2.0640 -5.9722 -0.0009 16 6 1.3279 -4.8015 -0.0004 17 6 -0.1470 -5.1229 0.0004 18 6 -0.2383 -6.6021 -0.4345 19 6 1.1341 -7.1654 -0.0043 20 1 -0.4850 0.8401 0.0004 21 1 0.3553 -2.3878 -0.0005 22 1 -0.6731 -4.4863 -0.7111 23 1 -0.5612 -4.9963 1.0005 24 1 -1.0473 -7.1107 0.0899 25 1 -0.3685 -6.6813 -1.5137 26 1 1.0701 -7.5968 0.9947 27 1 1.4762 -7.9138 -0.7191 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182685.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:03 Heat of formation + Delta-G solvation = 24.024212 kcal Electronic energy + Delta-G solvation = -14487.503041 eV Core-core repulsion = 11884.252094 eV Total energy + Delta-G solvation = -2603.250947 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 239.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.94586 -38.04308 -37.81589 -37.18824 -34.20681 -31.49763 -30.76066 -29.16138 -26.83706 -24.38646 -23.12019 -21.63255 -20.25777 -18.35138 -18.08195 -17.23079 -16.68943 -16.38064 -15.55069 -15.46500 -14.47173 -14.02744 -13.73470 -13.61065 -13.41181 -12.87113 -12.86719 -12.52354 -12.36958 -12.20171 -12.15011 -12.04787 -11.97341 -11.79214 -10.86277 -10.31316 -10.15504 -9.18817 -8.64094 -5.89969 0.10786 0.31243 1.03190 1.40921 1.43230 1.55344 2.20971 2.61125 2.89839 3.15009 3.41590 3.53417 3.85504 3.96980 4.19623 4.30307 4.76394 4.78588 4.83671 4.86802 4.97660 5.14787 5.21949 5.25201 5.35373 5.40414 5.75194 6.65219 7.12747 7.28529 8.21329 8.52132 Molecular weight = 239.05amu Principal moments of inertia in cm(-1) A = 0.032773 B = 0.007133 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.164521 B = 3924.436004 C = 4746.311396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.013 4.013 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.313 4.313 8 H 0.100 0.900 9 N -0.521 5.521 10 C 0.290 3.710 11 N -0.351 5.351 12 N -0.217 5.217 13 C 0.010 3.990 14 Cl -0.030 7.030 15 C -0.052 4.052 16 C -0.186 4.186 17 C -0.069 4.069 18 C -0.104 4.104 19 C -0.070 4.070 20 H 0.283 0.717 21 H 0.409 0.591 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.112 0.888 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.991 -11.882 -0.101 12.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.215 4.215 3 Si 0.822 3.178 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.444 4.444 8 H 0.117 0.883 9 N -0.130 5.130 10 C 0.043 3.957 11 N -0.212 5.212 12 N -0.061 5.061 13 C -0.170 4.170 14 Cl -0.003 7.003 15 C -0.063 4.063 16 C -0.203 4.203 17 C -0.106 4.106 18 C -0.141 4.141 19 C -0.108 4.108 20 H 0.093 0.907 21 H 0.246 0.754 22 H 0.090 0.910 23 H 0.106 0.894 24 H 0.130 0.870 25 H 0.099 0.901 26 H 0.123 0.877 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.723 -10.653 -0.104 10.792 hybrid contribution -0.892 0.260 0.028 0.929 sum -2.615 -10.393 -0.076 10.717 Atomic orbital electron populations 1.69723 1.07039 1.30000 1.48035 1.26199 0.96607 1.02806 0.95913 0.84755 0.78326 0.76326 0.78380 1.19142 1.19553 1.19536 1.20105 0.93591 0.83042 1.47678 0.88260 1.40786 1.07958 1.01663 1.62553 1.19867 0.90975 0.86959 0.97908 1.73009 1.04831 1.16851 1.26475 1.72312 1.32332 0.94683 1.06799 1.22484 0.89361 0.89762 1.15408 1.98291 1.72020 1.32561 1.97417 1.21372 0.91476 0.98340 0.95065 1.21179 0.99565 0.90939 1.08588 1.20943 0.88267 0.98765 1.02661 1.22360 0.96792 0.92435 1.02492 1.21193 0.92096 0.93325 1.04138 0.90727 0.75424 0.91000 0.89445 0.86953 0.90072 0.87719 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.99 13.05 21.65 0.28 -46.71 15 2 C -0.01 -0.68 5.50 84.87 0.47 -0.22 15 3 Si 1.00 41.04 29.55 68.60 2.03 43.07 15 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 15 5 H -0.27 -10.68 7.11 99.48 0.71 -9.98 15 6 H -0.27 -10.67 7.11 99.48 0.71 -9.96 15 7 C -0.31 -16.86 9.71 84.04 0.82 -16.05 15 8 H 0.10 5.60 7.10 -2.91 -0.02 5.58 15 9 N -0.52 -26.22 5.42 -188.86 -1.02 -27.25 15 10 C 0.29 13.88 7.52 133.09 1.00 14.88 15 11 N -0.35 -18.10 10.30 -55.11 -0.57 -18.67 15 12 N -0.22 -10.23 11.48 -49.82 -0.57 -10.80 15 13 C 0.01 0.40 7.37 84.80 0.63 1.03 15 14 Cl -0.03 -0.95 28.99 -2.72 -0.08 -1.03 15 15 C -0.05 -1.82 6.11 -19.53 -0.12 -1.94 15 16 C -0.19 -7.15 6.17 -19.48 -0.12 -7.27 15 17 C -0.07 -1.93 6.41 30.42 0.20 -1.74 15 18 C -0.10 -2.04 7.08 31.58 0.22 -1.82 15 19 C -0.07 -1.59 6.61 30.53 0.20 -1.39 15 20 H 0.28 13.59 8.31 -92.71 -0.77 12.82 15 21 H 0.41 19.83 7.59 -92.71 -0.70 19.12 15 22 H 0.07 2.06 8.14 -2.38 -0.02 2.04 15 23 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 24 H 0.11 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.08 1.49 8.14 -2.39 -0.02 1.47 15 26 H 0.10 2.01 8.14 -2.38 -0.02 1.99 15 27 H 0.10 1.91 8.14 -2.39 -0.02 1.89 15 Total: -1.00 -61.38 254.46 3.87 -57.51 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.51 Total: 18.37 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 3.29 Total: -14.49 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -1.88 Total: -103.43 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -61.38 3.87 -57.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182685.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.537 kcal (2) G-P(sol) polarization free energy of solvation -61.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds