Wall clock time and date at job start Sun Mar 29 2020 21:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00349 * 2 1 4 4 C 1.38842 * 120.39218 * 359.97438 * 3 2 1 5 5 N 1.31746 * 120.77251 * 179.76978 * 4 3 2 6 6 C 1.32469 * 121.69238 * 0.51330 * 5 4 3 7 7 N 1.39000 * 119.63989 * 179.75633 * 6 5 4 8 8 C 1.32717 * 120.00230 * 185.50999 * 7 6 5 9 9 H 1.08002 * 119.99845 * 354.76960 * 8 7 6 10 10 C 1.46775 * 120.00194 * 174.49715 * 8 7 6 11 11 N 1.29330 * 119.99885 * 180.27260 * 10 8 7 12 12 Si 1.86798 * 119.99763 * 0.27346 * 10 8 7 13 13 H 1.48504 * 109.46904 * 90.00175 * 12 10 8 14 14 H 1.48497 * 109.47008 * 209.99649 * 12 10 8 15 15 H 1.48496 * 109.47496 * 330.00061 * 12 10 8 16 16 C 1.39161 * 120.72020 * 359.48248 * 6 5 4 17 17 C 1.38329 * 119.16007 * 0.25391 * 16 6 5 18 18 N 1.48015 * 120.78000 * 179.97438 * 17 16 6 19 19 O 1.31696 * 119.99744 * 0.02562 * 18 17 16 20 20 O 1.31698 * 120.00027 * 179.97438 * 18 17 16 21 21 H 1.09007 * 109.46844 * 300.00306 * 1 2 3 22 22 H 1.08995 * 109.46988 * 59.99843 * 1 2 3 23 23 H 1.09001 * 109.47048 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.61456 * 0.03643 * 4 3 2 25 25 H 0.96999 * 119.99686 * 5.50808 * 7 6 5 26 26 H 0.97002 * 120.00024 * 179.97438 * 11 10 8 27 27 H 1.08001 * 120.41896 * 180.26853 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2979 2.3804 -0.0005 5 7 1.8883 3.5582 0.0040 6 6 3.2078 3.6753 -0.0009 7 7 3.7857 4.9394 -0.0009 8 6 5.1017 5.0675 -0.1161 9 1 5.7309 4.1898 -0.1248 10 6 5.7014 6.4016 -0.2377 11 7 6.9833 6.5261 -0.3553 12 14 4.6130 7.9197 -0.2226 13 1 4.4454 8.3947 1.1744 14 1 5.2442 8.9893 -1.0367 15 1 3.2844 7.5820 -0.7934 16 6 4.0216 2.5465 -0.0002 17 6 3.4360 1.2933 0.0002 18 7 4.2673 0.0687 0.0003 19 8 5.5808 0.1645 0.0005 20 8 3.6936 -1.1167 0.0012 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 0.2194 2.3241 -0.0004 25 1 3.2272 5.7280 0.0833 26 1 7.3796 7.4077 -0.4360 27 1 5.0969 2.6476 0.0001 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182886.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:10 Heat of formation + Delta-G solvation = 24.616172 kcal Electronic energy + Delta-G solvation = -16558.223853 eV Core-core repulsion = 13514.289411 eV Total energy + Delta-G solvation = -3043.934442 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.83113 -40.07279 -38.04402 -36.73728 -36.34066 -32.50275 -32.36951 -30.79033 -28.45409 -27.35015 -26.46290 -23.76301 -22.98704 -21.91411 -19.43601 -18.73532 -18.51078 -17.61376 -17.11783 -16.53505 -16.28618 -16.02368 -15.92312 -15.30063 -14.84488 -14.47511 -14.41937 -14.11417 -13.93353 -13.20600 -12.93786 -12.37110 -12.29922 -11.95102 -11.70536 -10.66814 -10.30849 -10.12558 -9.92884 -9.83251 -9.55393 -9.05715 -5.88148 -1.79296 0.46237 0.58663 0.71058 0.83342 1.21656 1.36791 1.72495 1.82036 2.53295 2.78875 3.04303 3.13299 3.24554 3.82786 3.91949 4.21433 4.33939 4.40588 4.52074 4.56217 4.73463 4.99783 5.08693 5.32322 5.65408 6.07254 6.22234 7.01781 7.30325 7.82945 8.78161 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031819 B = 0.007101 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.755684 B = 3942.208883 C = 4803.820839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C -0.021 4.021 4 C 0.051 3.949 5 N -0.574 5.574 6 C 0.278 3.722 7 N -0.401 5.401 8 C 0.343 3.657 9 H 0.204 0.796 10 C -0.053 4.053 11 N -0.534 5.534 12 Si 0.970 3.030 13 H -0.214 1.214 14 H -0.210 1.210 15 H -0.217 1.217 16 C -0.257 4.257 17 C 0.031 3.969 18 N -0.091 5.091 19 O -0.688 6.688 20 O -0.672 6.672 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.094 0.906 24 H 0.181 0.819 25 H 0.447 0.553 26 H 0.388 0.612 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 35.883 -0.692 36.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C -0.074 4.074 4 C -0.096 4.096 5 N -0.309 5.309 6 C 0.053 3.947 7 N 0.014 4.986 8 C 0.157 3.843 9 H 0.220 0.780 10 C -0.293 4.293 11 N -0.157 5.157 12 Si 0.778 3.222 13 H -0.136 1.136 14 H -0.132 1.132 15 H -0.140 1.140 16 C -0.293 4.293 17 C -0.105 4.105 18 N 0.193 4.807 19 O -0.752 6.752 20 O -0.737 6.737 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.113 0.887 24 H 0.198 0.802 25 H 0.294 0.706 26 H 0.211 0.789 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.230 35.583 -0.695 35.736 hybrid contribution 0.728 -1.354 0.017 1.537 sum -2.502 34.229 -0.678 34.327 Atomic orbital electron populations 1.23210 0.78707 1.03997 1.01908 1.86460 1.21541 1.27163 1.89130 1.19528 0.90420 0.86731 1.10757 1.21800 0.98858 0.83887 1.05017 1.66511 1.06243 1.26170 1.31945 1.17281 0.90639 0.80667 1.06140 1.42077 1.07795 1.10649 1.38128 1.26829 0.84119 1.03635 0.69725 0.77960 1.29414 1.00177 0.99941 0.99797 1.68380 1.13005 1.38110 0.96175 0.85214 0.78975 0.72992 0.85047 1.13568 1.13166 1.13962 1.19760 0.99086 0.88859 1.21581 1.19395 0.88319 0.85597 1.17147 1.47141 0.98308 0.99743 1.35459 1.95443 0.95413 1.95695 1.88603 1.95571 1.75781 1.14364 1.87936 0.91539 0.91525 0.88712 0.80218 0.70569 0.78885 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.82 113.37 1.11 1.80 15 2 O -0.33 -20.69 8.57 -71.80 -0.62 -21.30 15 3 C -0.02 -1.23 6.70 22.66 0.15 -1.08 15 4 C 0.05 2.25 10.22 84.85 0.87 3.12 15 5 N -0.57 -21.26 10.38 -192.70 -2.00 -23.26 15 6 C 0.28 9.59 7.59 133.05 1.01 10.60 15 7 N -0.40 -6.01 5.16 -185.33 -0.96 -6.97 15 8 C 0.34 3.43 10.29 86.79 0.89 4.32 15 9 H 0.20 3.08 5.81 -2.91 -0.02 3.06 15 10 C -0.05 -0.10 5.69 87.29 0.50 0.40 15 11 N -0.53 -1.98 13.88 23.25 0.32 -1.66 15 12 Si 0.97 -3.18 27.82 68.60 1.91 -1.27 15 13 H -0.21 0.61 7.11 99.48 0.71 1.32 15 14 H -0.21 0.80 7.11 99.48 0.71 1.51 15 15 H -0.22 0.64 6.69 99.48 0.67 1.30 15 16 C -0.26 -13.07 8.85 22.51 0.20 -12.87 15 17 C 0.03 2.15 6.95 36.64 0.25 2.40 15 18 N -0.09 -8.06 4.98 -45.84 -0.23 -8.29 15 19 O -0.69 -63.51 19.25 3.52 0.07 -63.44 15 20 O -0.67 -64.94 18.03 10.66 0.19 -64.75 15 21 H 0.07 2.29 7.68 -2.38 -0.02 2.27 15 22 H 0.07 2.30 7.67 -2.39 -0.02 2.28 15 23 H 0.09 3.55 8.14 -2.39 -0.02 3.53 15 24 H 0.18 6.28 6.31 -2.91 -0.02 6.26 15 25 H 0.45 2.75 6.13 -92.71 -0.57 2.18 15 26 H 0.39 -0.97 8.26 -92.71 -0.77 -1.74 15 27 H 0.12 6.02 5.57 -2.91 -0.02 6.00 15 Total: -1.00 -158.60 250.65 4.31 -154.29 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.64 Total: 27.98 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 4.99 Total: 8.68 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -2.86 Total: -40.19 kcal Atomic # 8 Polarization: -149.14 SS G_CDS: -0.36 Total: -149.49 kcal Atomic # 14 Polarization: -3.18 SS G_CDS: 1.91 Total: -1.27 kcal Total: -158.60 4.31 -154.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182886.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.905 kcal (2) G-P(sol) polarization free energy of solvation -158.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -154.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds