Wall clock time and date at job start Sun Mar 29 2020 21:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34759 * 116.99871 * 2 1 4 4 O 1.21514 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.47421 * 119.99686 * 180.02562 * 3 2 1 6 6 C 1.37671 * 120.21654 * 0.04081 * 5 3 2 7 7 O 1.33768 * 120.81040 * 179.97438 * 6 5 3 8 8 C 1.34334 * 121.29380 * 0.02562 * 7 6 5 9 9 O 1.21806 * 119.81337 * 179.97438 * 8 7 6 10 10 C 1.41714 * 120.37120 * 359.97438 * 8 7 6 11 11 N 1.39227 * 120.41837 * 180.02562 * 10 8 7 12 12 C 1.36720 * 119.99803 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00275 * 359.97438 * 12 11 10 14 14 C 1.38767 * 119.99660 * 179.97438 * 12 11 10 15 15 N 1.31614 * 120.00008 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99733 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47142 * 90.00161 * 16 14 12 18 18 H 1.48495 * 109.47363 * 210.00379 * 16 14 12 19 19 H 1.48505 * 109.47349 * 330.00140 * 16 14 12 20 20 C 1.36746 * 119.16260 * 0.02562 * 10 8 7 21 21 H 1.08994 * 109.47031 * 60.00337 * 1 2 3 22 22 H 1.09005 * 109.46684 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47357 * 299.99668 * 1 2 3 24 24 H 1.08002 * 119.59249 * 359.97438 * 6 5 3 25 25 H 0.96998 * 120.00376 * 359.97438 * 11 10 8 26 26 H 0.97002 * 119.99477 * 179.97438 * 15 14 12 27 27 H 1.08005 * 120.61292 * 179.97438 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2198 0.0005 5 6 3.5359 1.2778 -0.0006 6 6 4.2901 0.1260 -0.0020 7 8 5.6266 0.1822 -0.0030 8 6 6.2756 1.3583 -0.0022 9 8 7.4935 1.3780 -0.0027 10 6 5.5512 2.5764 -0.0008 11 7 6.2229 3.7959 -0.0005 12 6 5.5154 4.9659 0.0014 13 1 4.4357 4.9441 0.0022 14 6 6.1849 6.1814 0.0022 15 7 7.5007 6.2079 0.0006 16 14 5.2184 7.7799 0.0040 17 1 4.9629 8.2022 1.4046 18 1 5.9994 8.8314 -0.6955 19 1 3.9243 7.5768 -0.6956 20 6 4.1843 2.5387 0.0003 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 3.7965 -0.8346 -0.0022 25 1 7.1926 3.8156 -0.0010 26 1 7.9686 7.0577 0.0008 27 1 3.6089 3.4528 0.0018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183178.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:47 Heat of formation + Delta-G solvation = -123.984962 kcal Electronic energy + Delta-G solvation = -16488.001640 eV Core-core repulsion = 13405.330618 eV Total energy + Delta-G solvation = -3082.671022 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.94108 -39.82399 -37.30787 -36.41536 -35.97802 -33.43987 -31.91883 -28.82461 -27.33853 -25.63440 -23.87689 -23.13690 -20.96533 -18.89510 -17.94676 -17.35917 -16.46616 -16.21530 -16.16916 -15.75079 -15.45387 -14.68719 -14.35510 -13.89707 -13.36152 -13.09462 -12.39814 -12.36560 -12.18824 -11.99040 -11.81983 -11.60589 -11.12106 -10.69640 -10.62781 -10.61108 -10.22549 -9.66399 -9.38056 -8.90185 -7.11894 -6.78722 -4.03715 1.31799 1.89841 2.93108 2.94694 2.97814 3.01757 3.22533 3.33710 3.72211 4.17498 4.69788 4.76693 5.09278 5.18275 5.25824 5.36650 5.60211 5.75834 6.12491 6.54278 6.69747 6.89540 6.96569 7.30368 7.38702 7.90593 8.12479 8.20196 8.26939 8.78742 9.00364 9.99705 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.023024 B = 0.007689 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.811075 B = 3640.723098 C = 4841.390503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.362 6.362 3 C 0.522 3.478 4 O -0.506 6.506 5 C -0.111 4.111 6 C -0.041 4.041 7 O -0.253 6.253 8 C 0.505 3.495 9 O -0.498 6.498 10 C 0.049 3.951 11 N -0.481 5.481 12 C -0.274 4.274 13 H 0.121 0.879 14 C 0.024 3.976 15 N -0.847 5.847 16 Si 0.948 3.052 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.266 4.266 21 H 0.060 0.940 22 H 0.097 0.903 23 H 0.060 0.940 24 H 0.185 0.815 25 H 0.411 0.589 26 H 0.289 0.711 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 -6.434 -0.004 11.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.279 6.279 3 C 0.368 3.632 4 O -0.395 6.395 5 C -0.115 4.115 6 C -0.110 4.110 7 O -0.160 6.160 8 C 0.356 3.644 9 O -0.390 6.390 10 C -0.077 4.077 11 N -0.078 5.078 12 C -0.405 4.405 13 H 0.138 0.862 14 C -0.186 4.186 15 N -0.479 5.479 16 Si 0.772 3.228 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.300 4.300 21 H 0.079 0.921 22 H 0.116 0.884 23 H 0.079 0.921 24 H 0.201 0.799 25 H 0.248 0.752 26 H 0.099 0.901 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.265 -5.830 -0.011 10.114 hybrid contribution -0.343 0.991 0.010 1.049 sum -8.608 -4.838 -0.001 9.874 Atomic orbital electron populations 1.23181 0.76843 1.03188 1.02419 1.86561 1.22956 1.33443 1.84990 1.21051 0.88946 0.80945 0.72304 1.90802 1.66649 1.36028 1.46009 1.18659 0.88103 0.94606 1.10118 1.23192 0.78140 0.98345 1.11346 1.83219 1.21306 1.35363 1.76106 1.19007 0.87032 0.82226 0.76117 1.90914 1.12143 1.86075 1.49891 1.18291 0.92516 0.86181 1.10703 1.41000 1.09418 1.01708 1.55655 1.20269 0.94155 0.82166 1.43897 0.86155 1.25756 0.96107 1.01129 0.95605 1.69735 1.07228 1.29789 1.41125 0.85549 0.79428 0.78532 0.79340 1.19335 1.20007 1.18314 1.19470 0.91277 0.95627 1.23598 0.92101 0.88409 0.92092 0.79863 0.75161 0.90081 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.57 101.05 1.07 1.47 15 2 O -0.36 -5.23 9.77 -40.65 -0.40 -5.63 15 3 C 0.52 9.41 7.89 34.47 0.27 9.68 15 4 O -0.51 -10.33 16.19 -19.28 -0.31 -10.64 15 5 C -0.11 -2.15 5.87 -105.01 -0.62 -2.77 15 6 C -0.04 -0.71 11.01 30.53 0.34 -0.38 15 7 O -0.25 -5.08 9.84 -17.62 -0.17 -5.25 15 8 C 0.51 11.50 7.96 32.06 0.26 11.75 15 9 O -0.50 -12.33 17.24 -19.56 -0.34 -12.66 15 10 C 0.05 1.15 6.64 -83.71 -0.56 0.60 15 11 N -0.48 -11.88 5.41 -9.55 -0.05 -11.93 15 12 C -0.27 -6.71 9.55 -15.18 -0.14 -6.85 15 13 H 0.12 2.86 5.72 -52.49 -0.30 2.56 15 14 C 0.02 0.56 5.50 -17.45 -0.10 0.46 15 15 N -0.85 -21.00 13.05 55.49 0.72 -20.28 15 16 Si 0.95 18.28 29.55 -169.99 -5.02 13.26 15 17 H -0.27 -5.13 7.11 56.52 0.40 -4.72 15 18 H -0.28 -5.22 7.11 56.52 0.40 -4.82 15 19 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 20 C -0.27 -5.89 8.90 -38.77 -0.35 -6.24 15 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.10 0.70 8.14 -51.93 -0.42 0.27 15 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.18 2.49 7.54 -52.49 -0.40 2.09 15 25 H 0.41 10.54 7.33 -40.82 -0.30 10.24 15 26 H 0.29 6.60 8.31 -40.82 -0.34 6.26 15 27 H 0.13 3.06 5.66 -52.48 -0.30 2.76 15 LS Contribution 255.24 15.07 3.85 3.85 Total: -1.00 -27.80 255.24 -3.25 -31.05 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -1.69 Total: 10.53 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 0.17 Total: 7.72 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.67 Total: -32.21 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -1.22 Total: -34.19 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.26 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -27.80 -3.25 -31.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183178.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.936 kcal (2) G-P(sol) polarization free energy of solvation -27.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds