Wall clock time and date at job start Sun Mar 29 2020 21:55:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45198 * 1
3 3 C 1.34759 * 116.99871 * 2 1
4 4 O 1.21514 * 120.00142 * 0.02562 * 3 2 1
5 5 C 1.47421 * 119.99686 * 180.02562 * 3 2 1
6 6 C 1.37671 * 120.21654 * 0.04081 * 5 3 2
7 7 O 1.33768 * 120.81040 * 179.97438 * 6 5 3
8 8 C 1.34334 * 121.29380 * 0.02562 * 7 6 5
9 9 O 1.21806 * 119.81337 * 179.97438 * 8 7 6
10 10 C 1.41714 * 120.37120 * 359.97438 * 8 7 6
11 11 N 1.39227 * 120.41837 * 180.02562 * 10 8 7
12 12 C 1.36720 * 119.99803 * 180.02562 * 11 10 8
13 13 H 1.07998 * 120.00275 * 359.97438 * 12 11 10
14 14 C 1.38767 * 119.99660 * 179.97438 * 12 11 10
15 15 N 1.31614 * 120.00008 * 0.02562 * 14 12 11
16 16 Si 1.86796 * 119.99733 * 179.97438 * 14 12 11
17 17 H 1.48501 * 109.47142 * 90.00161 * 16 14 12
18 18 H 1.48495 * 109.47363 * 210.00379 * 16 14 12
19 19 H 1.48505 * 109.47349 * 330.00140 * 16 14 12
20 20 C 1.36746 * 119.16260 * 0.02562 * 10 8 7
21 21 H 1.08994 * 109.47031 * 60.00337 * 1 2 3
22 22 H 1.09005 * 109.46684 * 179.97438 * 1 2 3
23 23 H 1.08995 * 109.47357 * 299.99668 * 1 2 3
24 24 H 1.08002 * 119.59249 * 359.97438 * 6 5 3
25 25 H 0.96998 * 120.00376 * 359.97438 * 11 10 8
26 26 H 0.97002 * 119.99477 * 179.97438 * 15 14 12
27 27 H 1.08005 * 120.61292 * 179.97438 * 20 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0637 1.2007 0.0000
4 8 1.4019 2.2198 0.0005
5 6 3.5359 1.2778 -0.0006
6 6 4.2901 0.1260 -0.0020
7 8 5.6266 0.1822 -0.0030
8 6 6.2756 1.3583 -0.0022
9 8 7.4935 1.3780 -0.0027
10 6 5.5512 2.5764 -0.0008
11 7 6.2229 3.7959 -0.0005
12 6 5.5154 4.9659 0.0014
13 1 4.4357 4.9441 0.0022
14 6 6.1849 6.1814 0.0022
15 7 7.5007 6.2079 0.0006
16 14 5.2184 7.7799 0.0040
17 1 4.9629 8.2022 1.4046
18 1 5.9994 8.8314 -0.6955
19 1 3.9243 7.5768 -0.6956
20 6 4.1843 2.5387 0.0003
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3634 0.5137 0.8900
24 1 3.7965 -0.8346 -0.0022
25 1 7.1926 3.8156 -0.0010
26 1 7.9686 7.0577 0.0008
27 1 3.6089 3.4528 0.0018
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001163183178.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:55:47
Heat of formation + Delta-G solvation = -141.431694 kcal
Electronic energy + Delta-G solvation = -16488.758187 eV
Core-core repulsion = 13405.330618 eV
Total energy + Delta-G solvation = -3083.427569 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 239.067 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-42.74088 -41.20528 -39.11873 -38.10836 -37.37363 -35.14588 -33.59398 -30.49396
-28.45633 -27.36899 -25.47218 -24.91003 -22.45587 -20.56712 -19.51207 -19.00704
-18.12860 -17.78743 -17.69160 -17.18490 -17.08564 -16.31792 -15.98163 -15.59302
-14.78351 -14.33322 -14.11669 -14.03578 -13.77754 -13.57432 -13.44100 -12.89115
-12.70422 -12.43510 -12.15527 -11.73393 -11.69201 -11.35135 -11.19991 -10.60142
-8.77504 -8.56406 -5.87145 -0.24500 0.15015 1.36579 1.39703 1.48630
1.55691 1.64566 1.75081 2.15278 2.48630 2.96965 3.01695 3.39024
3.92694 4.12745 4.41098 4.43558 4.51311 4.79625 4.96779 5.04580
5.25067 5.34090 5.50228 5.63681 6.12819 6.40805 6.49852 6.77339
7.09324 7.25300 8.37882
Molecular weight = 239.07amu
Principal moments of inertia in cm(-1)
A = 0.023024 B = 0.007689 C = 0.005782
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1215.811075 B = 3640.723098 C = 4841.390503
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.351 6.351
3 C 0.531 3.469
4 O -0.537 6.537
5 C -0.147 4.147
6 C 0.038 3.962
7 O -0.243 6.243
8 C 0.504 3.496
9 O -0.520 6.520
10 C 0.041 3.959
11 N -0.521 5.521
12 C -0.307 4.307
13 H 0.116 0.884
14 C -0.019 4.019
15 N -0.898 5.898
16 Si 1.011 2.989
17 H -0.265 1.265
18 H -0.271 1.271
19 H -0.258 1.258
20 C -0.244 4.244
21 H 0.060 0.940
22 H 0.141 0.859
23 H 0.060 0.940
24 H 0.245 0.755
25 H 0.400 0.600
26 H 0.289 0.711
27 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.549 -9.529 -0.003 14.972
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.267 6.267
3 C 0.378 3.622
4 O -0.428 6.428
5 C -0.151 4.151
6 C -0.031 4.031
7 O -0.149 6.149
8 C 0.356 3.644
9 O -0.414 6.414
10 C -0.081 4.081
11 N -0.122 5.122
12 C -0.437 4.437
13 H 0.133 0.867
14 C -0.222 4.222
15 N -0.533 5.533
16 Si 0.832 3.168
17 H -0.190 1.190
18 H -0.196 1.196
19 H -0.182 1.182
20 C -0.279 4.279
21 H 0.079 0.921
22 H 0.159 0.841
23 H 0.079 0.921
24 H 0.261 0.739
25 H 0.235 0.765
26 H 0.098 0.902
27 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -10.862 -8.985 -0.010 14.096
hybrid contribution 0.099 1.254 0.011 1.258
sum -10.763 -7.731 0.001 13.252
Atomic orbital electron populations
1.23614 0.74165 1.06088 1.02520 1.86512 1.25332 1.30799 1.84103
1.20646 0.88143 0.81671 0.71779 1.90810 1.67065 1.37392 1.47503
1.18784 0.89843 0.93946 1.12482 1.24472 0.76820 0.99997 1.01799
1.83323 1.22558 1.34160 1.74852 1.18948 0.86852 0.82486 0.76116
1.90909 1.13163 1.86365 1.50986 1.18559 0.92941 0.86505 1.10113
1.40856 1.08583 1.01935 1.60845 1.20308 0.93910 0.82883 1.46570
0.86678 1.26547 0.96842 1.03562 0.95282 1.69818 1.08487 1.30138
1.44832 0.84642 0.77975 0.74969 0.79227 1.19026 1.19556 1.18186
1.19677 0.90929 0.96844 1.20483 0.92096 0.84067 0.92082 0.73910
0.76538 0.90170 0.86429
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.48 10.57 113.37 1.20 1.68 15
2 O -0.35 -8.25 9.77 -56.69 -0.55 -8.81 15
3 C 0.53 17.20 7.89 70.24 0.55 17.75 15
4 O -0.54 -20.81 16.19 19.79 0.32 -20.49 15
5 C -0.15 -5.17 5.87 -20.12 -0.12 -5.28 15
6 C 0.04 1.09 11.01 67.69 0.75 1.83 15
7 O -0.24 -8.71 9.84 25.82 0.25 -8.45 15
8 C 0.50 22.35 7.96 68.68 0.55 22.89 15
9 O -0.52 -25.79 17.24 18.88 0.33 -25.47 15
10 C 0.04 1.91 6.64 38.48 0.26 2.17 15
11 N -0.52 -27.20 5.41 -184.13 -1.00 -28.20 15
12 C -0.31 -15.97 9.55 84.06 0.80 -15.17 15
13 H 0.12 5.80 5.72 -2.91 -0.02 5.79 15
14 C -0.02 -0.94 5.50 84.85 0.47 -0.48 15
15 N -0.90 -47.60 13.05 21.64 0.28 -47.32 15
16 Si 1.01 39.31 29.55 68.60 2.03 41.34 15
17 H -0.27 -10.00 7.11 99.48 0.71 -9.30 15
18 H -0.27 -10.15 7.11 99.48 0.71 -9.45 15
19 H -0.26 -9.75 7.11 99.48 0.71 -9.04 15
20 C -0.24 -10.64 8.90 22.80 0.20 -10.43 15
21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 15
22 H 0.14 1.15 8.14 -2.38 -0.02 1.13 15
23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 15
24 H 0.25 4.38 7.54 -2.91 -0.02 4.35 15
25 H 0.40 21.98 7.33 -92.71 -0.68 21.30 15
26 H 0.29 14.10 8.31 -92.71 -0.77 13.33 15
27 H 0.12 5.55 5.66 -2.91 -0.02 5.54 15
Total: -1.00 -63.59 255.24 6.87 -56.72
By element:
Atomic # 1 Polarization: 25.16 SS G_CDS: 0.56 Total: 25.72 kcal
Atomic # 6 Polarization: 10.31 SS G_CDS: 4.65 Total: 14.96 kcal
Atomic # 7 Polarization: -74.80 SS G_CDS: -0.71 Total: -75.52 kcal
Atomic # 8 Polarization: -63.56 SS G_CDS: 0.35 Total: -63.21 kcal
Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal
Total: -63.59 6.87 -56.72 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001163183178.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -84.715 kcal
(2) G-P(sol) polarization free energy of solvation -63.586 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.302 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.870 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.716 kcal
(6) G-S(sol) free energy of system = (1) + (5) -141.432 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds