Wall clock time and date at job start Sun Mar 29 2020 21:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34759 * 116.99871 * 2 1 4 4 O 1.21514 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.47421 * 119.99686 * 180.02562 * 3 2 1 6 6 C 1.37671 * 120.21654 * 0.04081 * 5 3 2 7 7 O 1.33768 * 120.81040 * 179.97438 * 6 5 3 8 8 C 1.34334 * 121.29380 * 0.02562 * 7 6 5 9 9 O 1.21806 * 119.81337 * 179.97438 * 8 7 6 10 10 C 1.41714 * 120.37120 * 359.97438 * 8 7 6 11 11 N 1.39227 * 120.41837 * 180.02562 * 10 8 7 12 12 C 1.36720 * 119.99803 * 180.02562 * 11 10 8 13 13 H 1.07998 * 120.00275 * 359.97438 * 12 11 10 14 14 C 1.38767 * 119.99660 * 179.97438 * 12 11 10 15 15 N 1.31614 * 120.00008 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99733 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47142 * 90.00161 * 16 14 12 18 18 H 1.48495 * 109.47363 * 210.00379 * 16 14 12 19 19 H 1.48505 * 109.47349 * 330.00140 * 16 14 12 20 20 C 1.36746 * 119.16260 * 0.02562 * 10 8 7 21 21 H 1.08994 * 109.47031 * 60.00337 * 1 2 3 22 22 H 1.09005 * 109.46684 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47357 * 299.99668 * 1 2 3 24 24 H 1.08002 * 119.59249 * 359.97438 * 6 5 3 25 25 H 0.96998 * 120.00376 * 359.97438 * 11 10 8 26 26 H 0.97002 * 119.99477 * 179.97438 * 15 14 12 27 27 H 1.08005 * 120.61292 * 179.97438 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4019 2.2198 0.0005 5 6 3.5359 1.2778 -0.0006 6 6 4.2901 0.1260 -0.0020 7 8 5.6266 0.1822 -0.0030 8 6 6.2756 1.3583 -0.0022 9 8 7.4935 1.3780 -0.0027 10 6 5.5512 2.5764 -0.0008 11 7 6.2229 3.7959 -0.0005 12 6 5.5154 4.9659 0.0014 13 1 4.4357 4.9441 0.0022 14 6 6.1849 6.1814 0.0022 15 7 7.5007 6.2079 0.0006 16 14 5.2184 7.7799 0.0040 17 1 4.9629 8.2022 1.4046 18 1 5.9994 8.8314 -0.6955 19 1 3.9243 7.5768 -0.6956 20 6 4.1843 2.5387 0.0003 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 3.7965 -0.8346 -0.0022 25 1 7.1926 3.8156 -0.0010 26 1 7.9686 7.0577 0.0008 27 1 3.6089 3.4528 0.0018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183178.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:47 Heat of formation + Delta-G solvation = -141.431694 kcal Electronic energy + Delta-G solvation = -16488.758187 eV Core-core repulsion = 13405.330618 eV Total energy + Delta-G solvation = -3083.427569 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.74088 -41.20528 -39.11873 -38.10836 -37.37363 -35.14588 -33.59398 -30.49396 -28.45633 -27.36899 -25.47218 -24.91003 -22.45587 -20.56712 -19.51207 -19.00704 -18.12860 -17.78743 -17.69160 -17.18490 -17.08564 -16.31792 -15.98163 -15.59302 -14.78351 -14.33322 -14.11669 -14.03578 -13.77754 -13.57432 -13.44100 -12.89115 -12.70422 -12.43510 -12.15527 -11.73393 -11.69201 -11.35135 -11.19991 -10.60142 -8.77504 -8.56406 -5.87145 -0.24500 0.15015 1.36579 1.39703 1.48630 1.55691 1.64566 1.75081 2.15278 2.48630 2.96965 3.01695 3.39024 3.92694 4.12745 4.41098 4.43558 4.51311 4.79625 4.96779 5.04580 5.25067 5.34090 5.50228 5.63681 6.12819 6.40805 6.49852 6.77339 7.09324 7.25300 8.37882 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.023024 B = 0.007689 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.811075 B = 3640.723098 C = 4841.390503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.531 3.469 4 O -0.537 6.537 5 C -0.147 4.147 6 C 0.038 3.962 7 O -0.243 6.243 8 C 0.504 3.496 9 O -0.520 6.520 10 C 0.041 3.959 11 N -0.521 5.521 12 C -0.307 4.307 13 H 0.116 0.884 14 C -0.019 4.019 15 N -0.898 5.898 16 Si 1.011 2.989 17 H -0.265 1.265 18 H -0.271 1.271 19 H -0.258 1.258 20 C -0.244 4.244 21 H 0.060 0.940 22 H 0.141 0.859 23 H 0.060 0.940 24 H 0.245 0.755 25 H 0.400 0.600 26 H 0.289 0.711 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.549 -9.529 -0.003 14.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.378 3.622 4 O -0.428 6.428 5 C -0.151 4.151 6 C -0.031 4.031 7 O -0.149 6.149 8 C 0.356 3.644 9 O -0.414 6.414 10 C -0.081 4.081 11 N -0.122 5.122 12 C -0.437 4.437 13 H 0.133 0.867 14 C -0.222 4.222 15 N -0.533 5.533 16 Si 0.832 3.168 17 H -0.190 1.190 18 H -0.196 1.196 19 H -0.182 1.182 20 C -0.279 4.279 21 H 0.079 0.921 22 H 0.159 0.841 23 H 0.079 0.921 24 H 0.261 0.739 25 H 0.235 0.765 26 H 0.098 0.902 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.862 -8.985 -0.010 14.096 hybrid contribution 0.099 1.254 0.011 1.258 sum -10.763 -7.731 0.001 13.252 Atomic orbital electron populations 1.23614 0.74165 1.06088 1.02520 1.86512 1.25332 1.30799 1.84103 1.20646 0.88143 0.81671 0.71779 1.90810 1.67065 1.37392 1.47503 1.18784 0.89843 0.93946 1.12482 1.24472 0.76820 0.99997 1.01799 1.83323 1.22558 1.34160 1.74852 1.18948 0.86852 0.82486 0.76116 1.90909 1.13163 1.86365 1.50986 1.18559 0.92941 0.86505 1.10113 1.40856 1.08583 1.01935 1.60845 1.20308 0.93910 0.82883 1.46570 0.86678 1.26547 0.96842 1.03562 0.95282 1.69818 1.08487 1.30138 1.44832 0.84642 0.77975 0.74969 0.79227 1.19026 1.19556 1.18186 1.19677 0.90929 0.96844 1.20483 0.92096 0.84067 0.92082 0.73910 0.76538 0.90170 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.57 113.37 1.20 1.68 15 2 O -0.35 -8.25 9.77 -56.69 -0.55 -8.81 15 3 C 0.53 17.20 7.89 70.24 0.55 17.75 15 4 O -0.54 -20.81 16.19 19.79 0.32 -20.49 15 5 C -0.15 -5.17 5.87 -20.12 -0.12 -5.28 15 6 C 0.04 1.09 11.01 67.69 0.75 1.83 15 7 O -0.24 -8.71 9.84 25.82 0.25 -8.45 15 8 C 0.50 22.35 7.96 68.68 0.55 22.89 15 9 O -0.52 -25.79 17.24 18.88 0.33 -25.47 15 10 C 0.04 1.91 6.64 38.48 0.26 2.17 15 11 N -0.52 -27.20 5.41 -184.13 -1.00 -28.20 15 12 C -0.31 -15.97 9.55 84.06 0.80 -15.17 15 13 H 0.12 5.80 5.72 -2.91 -0.02 5.79 15 14 C -0.02 -0.94 5.50 84.85 0.47 -0.48 15 15 N -0.90 -47.60 13.05 21.64 0.28 -47.32 15 16 Si 1.01 39.31 29.55 68.60 2.03 41.34 15 17 H -0.27 -10.00 7.11 99.48 0.71 -9.30 15 18 H -0.27 -10.15 7.11 99.48 0.71 -9.45 15 19 H -0.26 -9.75 7.11 99.48 0.71 -9.04 15 20 C -0.24 -10.64 8.90 22.80 0.20 -10.43 15 21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 15 22 H 0.14 1.15 8.14 -2.38 -0.02 1.13 15 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 15 24 H 0.25 4.38 7.54 -2.91 -0.02 4.35 15 25 H 0.40 21.98 7.33 -92.71 -0.68 21.30 15 26 H 0.29 14.10 8.31 -92.71 -0.77 13.33 15 27 H 0.12 5.55 5.66 -2.91 -0.02 5.54 15 Total: -1.00 -63.59 255.24 6.87 -56.72 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.56 Total: 25.72 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 4.65 Total: 14.96 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -0.71 Total: -75.52 kcal Atomic # 8 Polarization: -63.56 SS G_CDS: 0.35 Total: -63.21 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -63.59 6.87 -56.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183178.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.715 kcal (2) G-P(sol) polarization free energy of solvation -63.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds