Wall clock time and date at job start Sun Mar 29 2020 21:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35622 * 119.57854 * 2 1 4 4 C 1.36386 * 120.56499 * 179.97438 * 3 2 1 5 5 N 1.39220 * 120.11715 * 179.97438 * 4 3 2 6 6 C 1.32559 * 119.99966 * 180.02562 * 5 4 3 7 7 H 1.08008 * 119.99840 * 0.02562 * 6 5 4 8 8 C 1.46711 * 120.00447 * 179.97438 * 6 5 4 9 9 N 1.29375 * 119.99666 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00149 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47185 * 90.00638 * 10 8 6 12 12 H 1.48501 * 109.47257 * 210.00348 * 10 8 6 13 13 H 1.48496 * 109.47339 * 330.00207 * 10 8 6 14 14 C 1.40907 * 119.75842 * 0.02562 * 4 3 2 15 15 C 1.36197 * 119.18545 * 359.73646 * 14 4 3 16 16 N 1.48023 * 120.29070 * 180.27421 * 15 14 4 17 17 O 1.31694 * 119.99869 * 0.23757 * 16 15 14 18 18 O 1.31699 * 119.99858 * 180.23305 * 16 15 14 19 19 C 1.34613 * 119.57952 * 179.97438 * 2 1 3 20 20 O 1.22043 * 119.88070 * 0.02562 * 19 2 1 21 21 H 1.09002 * 109.47583 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47326 * 300.02923 * 1 2 3 23 23 H 1.09004 * 109.47067 * 60.01951 * 1 2 3 24 24 H 1.07997 * 119.71560 * 0.02562 * 3 2 1 25 25 H 0.96994 * 120.00392 * 0.02562 * 5 4 3 26 26 H 0.97007 * 120.00376 * 180.02562 * 9 8 6 27 27 H 1.07994 * 120.40817 * 179.97438 * 14 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1344 1.1795 0.0000 4 6 3.4981 1.2030 0.0005 5 7 4.1758 2.4191 0.0000 6 6 5.5013 2.4392 0.0000 7 1 6.0554 1.5121 0.0000 8 6 6.2156 3.7206 -0.0012 9 7 5.5518 4.8311 -0.0017 10 14 8.0833 3.7489 -0.0019 11 1 8.5777 3.7556 -1.4021 12 1 8.5602 4.9691 0.6972 13 1 8.5968 2.5445 0.6987 14 6 4.2184 -0.0081 0.0005 15 6 3.5360 -1.1867 0.0055 16 7 4.2681 -2.4733 0.0117 17 8 5.5850 -2.4815 0.0172 18 8 3.6024 -3.6096 0.0118 19 6 2.1295 -1.1707 0.0005 20 8 1.5093 -2.2218 0.0005 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5143 0.8897 23 1 -0.3633 0.5135 -0.8902 24 1 1.5830 2.1080 0.0004 25 1 3.6782 3.2516 -0.0004 26 1 6.0240 5.6785 -0.0028 27 1 5.2983 -0.0017 0.0005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183299.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:37 Heat of formation + Delta-G solvation = 10.971628 kcal Electronic energy + Delta-G solvation = -16647.810907 eV Core-core repulsion = 13603.284793 eV Total energy + Delta-G solvation = -3044.526114 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.03415 -40.55684 -37.48934 -36.88758 -36.20412 -33.69513 -32.49312 -30.78773 -28.21352 -27.53988 -26.30092 -23.58284 -22.94902 -21.70151 -19.50166 -18.82642 -17.82630 -17.42094 -17.03628 -16.77325 -16.34623 -15.93307 -15.77801 -15.52381 -14.58331 -14.43695 -14.35029 -13.71819 -13.71624 -13.49485 -13.17746 -12.72761 -12.16865 -11.94560 -11.55344 -10.74543 -10.71153 -10.36753 -9.99971 -9.90929 -9.64481 -8.70517 -5.78255 -1.53212 0.66682 0.70715 0.83187 1.28748 1.42593 1.62509 1.89215 2.11435 2.16858 2.56973 3.08206 3.09524 3.44871 4.06467 4.18146 4.20920 4.41885 4.58170 4.65498 4.65627 4.93898 5.07045 5.64343 5.75426 6.11196 6.20648 6.23064 6.64364 7.31822 7.79280 8.68190 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.026496 B = 0.007648 C = 0.005954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.528075 B = 3660.413607 C = 4701.792738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.489 5.489 3 C -0.030 4.030 4 C 0.079 3.921 5 N -0.375 5.375 6 C 0.297 3.703 7 H 0.210 0.790 8 C -0.031 4.031 9 N -0.569 5.569 10 Si 1.024 2.976 11 H -0.238 1.238 12 H -0.221 1.221 13 H -0.249 1.249 14 C -0.399 4.399 15 C -0.031 4.031 16 N -0.075 5.075 17 O -0.662 6.662 18 O -0.674 6.674 19 C 0.526 3.474 20 O -0.588 6.588 21 H 0.055 0.945 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.216 0.784 25 H 0.455 0.545 26 H 0.384 0.616 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 39.769 -0.074 39.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.212 5.212 3 C -0.155 4.155 4 C -0.021 4.021 5 N 0.045 4.955 6 C 0.111 3.889 7 H 0.226 0.774 8 C -0.272 4.272 9 N -0.192 5.192 10 Si 0.836 3.164 11 H -0.161 1.161 12 H -0.143 1.143 13 H -0.172 1.172 14 C -0.434 4.434 15 C -0.165 4.165 16 N 0.215 4.785 17 O -0.729 6.729 18 O -0.741 6.741 19 C 0.324 3.676 20 O -0.471 6.471 21 H 0.074 0.926 22 H 0.126 0.874 23 H 0.126 0.874 24 H 0.233 0.767 25 H 0.301 0.699 26 H 0.206 0.794 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.261 38.597 -0.065 38.663 hybrid contribution 0.505 -0.943 -0.003 1.069 sum 2.766 37.654 -0.068 37.756 Atomic orbital electron populations 1.22171 0.75598 1.04095 1.05391 1.43994 1.08860 1.04096 1.64264 1.20766 0.90009 0.90104 1.14581 1.16103 0.90885 0.81942 1.13171 1.41988 1.07668 1.10872 1.35020 1.27243 0.84132 1.02511 0.75037 0.77380 1.29639 1.09763 0.90512 0.97316 1.68465 1.47060 1.03770 0.99931 0.84371 0.65886 0.83326 0.82856 1.16068 1.14303 1.17201 1.18076 0.97497 0.87986 1.39861 1.20077 0.90671 0.84916 1.20807 1.47219 0.98446 0.99971 1.32904 1.95438 0.94019 1.96331 1.87144 1.95628 1.69077 1.21794 1.87598 1.16774 0.88092 0.84267 0.78435 1.90839 1.70357 1.33009 1.52907 0.92582 0.87446 0.87438 0.76731 0.69938 0.79362 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.00 10.57 127.77 1.35 3.36 15 2 N -0.49 -20.13 2.98 -673.61 -2.01 -22.13 15 3 C -0.03 -0.81 10.19 83.67 0.85 0.04 15 4 C 0.08 2.35 6.56 38.19 0.25 2.61 15 5 N -0.37 -4.26 5.29 -181.23 -0.96 -5.22 15 6 C 0.30 2.49 9.80 86.80 0.85 3.34 15 7 H 0.21 2.70 5.72 -2.91 -0.02 2.69 15 8 C -0.03 -0.01 5.69 87.27 0.50 0.48 15 9 N -0.57 1.01 13.08 23.24 0.30 1.32 15 10 Si 1.02 0.56 29.64 68.60 2.03 2.59 15 11 H -0.24 -0.65 7.11 99.48 0.71 0.05 15 12 H -0.22 0.33 7.11 99.48 0.71 1.03 15 13 H -0.25 -1.65 7.11 99.48 0.71 -0.94 15 14 C -0.40 -20.45 8.84 22.45 0.20 -20.25 15 15 C -0.03 -2.22 6.91 36.49 0.25 -1.97 15 16 N -0.08 -6.91 4.98 -46.18 -0.23 -7.14 15 17 O -0.66 -61.84 19.17 3.52 0.07 -61.77 15 18 O -0.67 -68.36 18.09 10.72 0.19 -68.16 15 19 C 0.53 33.38 7.41 84.86 0.63 34.00 15 20 O -0.59 -43.98 14.45 15.35 0.22 -43.76 15 21 H 0.06 2.13 6.85 -2.39 -0.02 2.11 15 22 H 0.11 2.20 8.14 -2.39 -0.02 2.19 15 23 H 0.11 2.20 8.14 -2.39 -0.02 2.18 15 24 H 0.22 2.36 8.05 -2.91 -0.02 2.33 15 25 H 0.45 0.79 7.96 -92.71 -0.74 0.05 15 26 H 0.38 -2.41 8.26 -92.70 -0.77 -3.17 15 27 H 0.10 5.19 5.56 -2.91 -0.02 5.17 15 Total: -1.00 -173.99 253.65 5.01 -168.98 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.51 Total: 13.70 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 4.88 Total: 21.61 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: -2.89 Total: -33.18 kcal Atomic # 8 Polarization: -174.17 SS G_CDS: 0.48 Total: -173.69 kcal Atomic # 14 Polarization: 0.56 SS G_CDS: 2.03 Total: 2.59 kcal Total: -173.99 5.01 -168.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183299.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.950 kcal (2) G-P(sol) polarization free energy of solvation -173.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -168.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds