Wall clock time and date at job start Sun Mar 29 2020 21:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35645 * 116.99876 * 2 1 4 4 N 1.32162 * 119.75059 * 359.73125 * 3 2 1 5 5 C 1.31974 * 121.74060 * 179.70680 * 4 3 2 6 6 C 1.38217 * 121.03886 * 0.56893 * 5 4 3 7 7 N 1.48009 * 120.30631 * 179.74417 * 6 5 4 8 8 O 1.31705 * 119.99958 * 179.97438 * 7 6 5 9 9 O 1.31703 * 120.00218 * 359.97438 * 7 6 5 10 10 C 1.38579 * 119.38499 * 359.71859 * 6 5 4 11 11 C 1.39287 * 118.40748 * 0.02562 * 10 6 5 12 12 N 1.39202 * 120.53498 * 180.02562 * 11 10 6 13 13 C 1.32572 * 119.99717 * 359.97438 * 12 11 10 14 14 H 1.08000 * 120.00692 * 359.97438 * 13 12 11 15 15 C 1.46772 * 119.99355 * 180.02562 * 13 12 11 16 16 N 1.29346 * 119.99618 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00282 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47089 * 90.00568 * 17 15 13 19 19 H 1.48500 * 109.47055 * 210.00361 * 17 15 13 20 20 H 1.48494 * 109.47196 * 330.00281 * 17 15 13 21 21 H 1.08999 * 109.47144 * 59.99724 * 1 2 3 22 22 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47352 * 299.99700 * 1 2 3 24 24 H 1.07991 * 119.48228 * 180.28410 * 5 4 3 25 25 H 1.08004 * 120.79641 * 180.02562 * 10 6 5 26 26 H 0.96998 * 119.99809 * 179.97438 * 12 11 10 27 27 H 0.97000 * 120.00276 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 7 1.3202 2.3139 -0.0054 5 6 1.8781 3.5099 0.0001 6 6 3.2526 3.6551 0.0001 7 7 3.8610 5.0043 0.0007 8 8 5.1715 5.1357 0.0011 9 8 3.0921 6.0736 0.0007 10 6 4.0557 2.5258 0.0001 11 6 3.4412 1.2757 -0.0004 12 7 4.2053 0.1121 0.0001 13 6 5.5288 0.1883 0.0006 14 1 6.0143 1.1530 0.0001 15 6 6.3343 -1.0387 0.0005 16 7 7.6256 -0.9644 0.0005 17 14 5.4947 -2.7073 0.0005 18 1 5.2723 -3.1495 -1.3996 19 1 6.3553 -3.6944 0.7006 20 1 4.1891 -2.6044 0.7005 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.2508 4.3889 0.0001 25 1 5.1322 2.6128 0.0005 26 1 3.7693 -0.7543 0.0001 27 1 8.1581 -1.7752 0.0008 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183372.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:56 Heat of formation + Delta-G solvation = 17.136129 kcal Electronic energy + Delta-G solvation = -16555.413928 eV Core-core repulsion = 13511.155126 eV Total energy + Delta-G solvation = -3044.258801 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.92840 -40.01746 -38.78817 -37.93258 -35.48229 -34.83458 -33.08478 -31.18206 -28.63355 -27.14419 -26.67041 -23.81764 -23.20234 -21.03385 -19.81119 -19.45222 -18.98526 -17.96438 -17.26949 -17.25388 -16.81178 -16.58876 -15.60239 -15.23272 -14.72623 -14.64885 -14.53761 -13.98191 -13.64436 -12.80115 -12.72041 -12.58667 -12.44264 -12.29316 -12.21219 -12.10869 -11.83809 -11.25718 -11.01143 -10.69412 -9.09481 -8.90707 -5.76651 -1.69427 0.15061 0.18605 0.28985 1.22633 1.28592 1.33544 1.96040 2.01810 2.36162 2.59897 2.84438 3.38520 3.70299 3.89336 4.01127 4.38723 4.51566 4.52752 4.64302 4.80862 4.90781 5.03774 5.24438 5.43301 5.76961 6.02373 6.14630 6.65282 6.92286 7.07676 8.17498 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.020925 B = 0.008957 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.784955 B = 3125.423791 C = 4448.064036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.317 6.317 3 C 0.284 3.716 4 N -0.478 5.478 5 C 0.065 3.935 6 C -0.011 4.011 7 N 0.003 4.997 8 O -0.251 6.251 9 O -0.160 6.160 10 C -0.176 4.176 11 C 0.106 3.894 12 N -0.496 5.496 13 C -0.362 4.362 14 H 0.093 0.907 15 C 0.019 3.981 16 N -0.839 5.839 17 Si 0.952 3.048 18 H -0.250 1.250 19 H -0.257 1.257 20 H -0.239 1.239 21 H 0.062 0.938 22 H 0.127 0.873 23 H 0.062 0.938 24 H 0.191 0.809 25 H 0.133 0.867 26 H 0.399 0.601 27 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.854 -4.483 0.023 12.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.223 6.223 3 C 0.092 3.908 4 N -0.204 5.204 5 C -0.091 4.091 6 C -0.102 4.102 7 N 0.474 4.526 8 O -0.427 6.427 9 O -0.363 6.363 10 C -0.208 4.208 11 C -0.022 4.022 12 N -0.093 5.093 13 C -0.493 4.493 14 H 0.110 0.890 15 C -0.197 4.197 16 N -0.466 5.466 17 Si 0.770 3.230 18 H -0.174 1.174 19 H -0.180 1.180 20 H -0.162 1.162 21 H 0.081 0.919 22 H 0.145 0.855 23 H 0.081 0.919 24 H 0.208 0.792 25 H 0.151 0.849 26 H 0.237 0.763 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.171 -5.672 0.017 13.427 hybrid contribution 1.271 -0.041 0.005 1.272 sum -10.899 -5.713 0.022 12.306 Atomic orbital electron populations 1.23185 0.74903 1.05025 1.02863 1.86104 1.25194 1.23322 1.87717 1.19418 0.86986 0.85981 0.98396 1.67393 1.37147 0.97049 1.18861 1.21740 0.88363 0.95397 1.03637 1.21099 0.94445 0.78403 1.16238 1.50557 1.02623 1.04762 0.94693 1.96275 0.90631 1.95598 1.60153 1.96144 1.58754 1.27369 1.53990 1.19911 1.00258 0.88405 1.12274 1.17232 0.87596 0.87287 1.10037 1.39560 1.05053 1.05098 1.59612 1.20367 0.81111 0.95844 1.51976 0.88967 1.27636 0.95364 1.02833 0.93822 1.68679 1.07519 1.34240 1.36195 0.85536 0.80221 0.76335 0.80927 1.17380 1.18038 1.16209 0.91890 0.85521 0.91927 0.79189 0.84897 0.76331 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.38 113.37 1.18 1.90 15 2 O -0.32 -9.72 9.74 -89.59 -0.87 -10.59 15 3 C 0.28 10.26 7.52 85.02 0.64 10.90 15 4 N -0.48 -16.29 9.21 -308.25 -2.84 -19.13 15 5 C 0.07 2.27 10.73 84.67 0.91 3.18 15 6 C -0.01 -0.45 6.90 36.45 0.25 -0.20 15 7 N 0.00 0.13 4.98 -46.29 -0.23 -0.11 15 8 O -0.25 -11.82 19.22 3.51 0.07 -11.75 15 9 O -0.16 -6.32 19.17 3.51 0.07 -6.25 15 10 C -0.18 -7.75 8.90 22.60 0.20 -7.55 15 11 C 0.11 4.39 6.64 38.60 0.26 4.65 15 12 N -0.50 -21.09 5.14 -179.90 -0.93 -22.02 15 13 C -0.36 -17.56 10.31 86.81 0.90 -16.67 15 14 H 0.09 5.05 5.88 -2.91 -0.02 5.03 15 15 C 0.02 0.87 5.69 87.29 0.50 1.37 15 16 N -0.84 -41.02 13.88 23.26 0.32 -40.70 15 17 Si 0.95 32.45 27.86 68.60 1.91 34.36 15 18 H -0.25 -8.18 7.11 99.48 0.71 -7.48 15 19 H -0.26 -8.39 7.11 99.48 0.71 -7.68 15 20 H -0.24 -7.44 6.62 99.48 0.66 -6.78 15 21 H 0.06 1.28 8.10 -2.39 -0.02 1.26 15 22 H 0.13 1.77 8.14 -2.38 -0.02 1.75 15 23 H 0.06 1.28 8.11 -2.39 -0.02 1.26 15 24 H 0.19 5.53 7.57 -2.92 -0.02 5.51 15 25 H 0.13 6.49 5.67 -2.91 -0.02 6.47 15 26 H 0.40 15.20 5.31 -92.71 -0.49 14.71 15 27 H 0.30 13.22 8.26 -92.71 -0.77 12.45 15 Total: -1.00 -55.15 254.17 3.03 -52.12 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.70 Total: 26.50 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 4.83 Total: -2.43 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -3.67 Total: -81.95 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.74 Total: -28.60 kcal Atomic # 14 Polarization: 32.45 SS G_CDS: 1.91 Total: 34.36 kcal Total: -55.15 3.03 -52.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183372.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.255 kcal (2) G-P(sol) polarization free energy of solvation -55.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds