Wall clock time and date at job start Sun Mar 29 2020 22:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43202 * 120.00168 * 278.79482 * 3 2 1 5 5 N 3.51038 * 140.68834 * 278.80183 * 2 1 3 6 6 C 1.37910 * 119.99983 * 98.52427 * 3 2 1 7 7 C 1.46311 * 119.99853 * 173.15837 * 6 3 2 8 8 C 1.40353 * 120.10414 * 330.53754 * 7 6 3 9 9 C 1.36448 * 119.89842 * 179.75948 * 8 7 6 10 10 C 1.39518 * 120.10198 * 0.49452 * 9 8 7 11 11 N 1.38565 * 119.90038 * 179.74012 * 10 9 8 12 12 C 1.36597 * 119.99577 * 0.02562 * 11 10 9 13 13 H 1.08001 * 120.00423 * 0.02562 * 12 11 10 14 14 C 1.38978 * 119.99466 * 180.02562 * 12 11 10 15 15 N 1.31457 * 120.00368 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99996 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47384 * 89.99485 * 16 14 12 18 18 H 1.48496 * 109.47385 * 209.99878 * 16 14 12 19 19 H 1.48505 * 109.47089 * 329.99830 * 16 14 12 20 20 C 1.39519 * 120.19846 * 359.76331 * 10 9 8 21 21 C 1.36443 * 120.10513 * 359.97438 * 20 10 9 22 22 H 1.07994 * 120.00031 * 353.16146 * 6 3 2 23 23 H 1.08006 * 120.05332 * 0.02562 * 8 7 6 24 24 H 1.08005 * 119.95218 * 180.23104 * 9 8 7 25 25 H 0.96994 * 119.99596 * 180.02562 * 11 10 9 26 26 H 0.96992 * 120.00297 * 180.02562 * 15 14 12 27 27 H 1.07997 * 119.94483 * 179.97438 * 20 10 9 28 28 H 1.07997 * 120.05261 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2840 -0.1887 1.2256 5 7 3.8519 -0.3403 2.1978 6 6 3.2574 0.1780 -1.1811 7 6 4.7126 0.3286 -1.1632 8 6 5.3477 0.8985 -0.0489 9 6 6.7055 1.0325 -0.0345 10 6 7.4615 0.6133 -1.1296 11 7 8.8397 0.7563 -1.1128 12 6 9.4560 1.3064 -0.0250 13 1 8.8692 1.6295 0.8222 14 6 10.8382 1.4502 -0.0084 15 7 11.5525 1.0564 -1.0393 16 14 11.6813 2.2018 1.4795 17 1 12.0301 1.1290 2.4453 18 1 12.9184 2.9002 1.0472 19 1 10.7654 3.1738 2.1289 20 6 6.8341 0.0511 -2.2417 21 6 5.4773 -0.0916 -2.2627 22 1 2.7231 0.2058 -2.1193 23 1 4.7629 1.2267 0.7978 24 1 7.1954 1.4675 0.8241 25 1 9.3666 0.4657 -1.8735 26 1 12.5172 1.1565 -1.0276 27 1 7.4233 -0.2715 -3.0873 28 1 4.9925 -0.5265 -3.1241 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183679.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:09 Heat of formation + Delta-G solvation = 100.054107 kcal Electronic energy + Delta-G solvation = -14811.691727 eV Core-core repulsion = 12214.170533 eV Total energy + Delta-G solvation = -2597.521194 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.00489 -37.29147 -35.95701 -35.47419 -33.27987 -31.94273 -30.36231 -28.29917 -25.49073 -23.46473 -21.99479 -20.60585 -19.63978 -18.13547 -17.04193 -15.90476 -15.13289 -14.57726 -14.42676 -13.99991 -13.64633 -13.31636 -13.18551 -12.86823 -12.81066 -12.69449 -12.32974 -12.08467 -11.99446 -11.77974 -11.56332 -11.14450 -10.82738 -10.78054 -10.67058 -10.01555 -9.47502 -8.75063 -8.38597 -7.17580 -6.90554 -4.18241 0.70375 2.36988 2.42937 2.80022 2.90247 2.91812 2.94632 3.13232 3.25255 3.64259 4.04466 4.22067 4.37491 4.71405 4.78334 4.86617 5.40624 5.54041 5.60039 5.98860 6.09590 6.20794 6.44741 6.52332 6.76299 6.78495 7.07200 7.18268 7.24811 7.38652 7.74844 7.78878 8.04676 8.15236 8.72243 8.89224 9.95081 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.039479 B = 0.004997 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.066071 B = 5602.465854 C = 6197.200392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.284 3.716 3 C -0.129 4.129 4 C 0.283 3.717 5 N -0.445 5.445 6 C 0.119 3.881 7 C -0.265 4.265 8 C -0.018 4.018 9 C -0.220 4.220 10 C 0.199 3.801 11 N -0.501 5.501 12 C -0.300 4.300 13 H 0.116 0.884 14 C 0.028 3.972 15 N -0.860 5.860 16 Si 0.942 3.058 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.261 1.261 20 C -0.239 4.239 21 C -0.010 4.010 22 H 0.136 0.864 23 H 0.110 0.890 24 H 0.117 0.883 25 H 0.405 0.595 26 H 0.287 0.713 27 H 0.109 0.891 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.142 0.170 -3.385 5.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.029 4.029 3 C -0.139 4.139 4 C -0.030 4.030 5 N -0.122 5.122 6 C 0.092 3.908 7 C -0.270 4.270 8 C -0.039 4.039 9 C -0.242 4.242 10 C 0.068 3.932 11 N -0.092 5.092 12 C -0.431 4.431 13 H 0.134 0.866 14 C -0.181 4.181 15 N -0.492 5.492 16 Si 0.766 3.234 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.262 4.262 21 C -0.031 4.031 22 H 0.154 0.846 23 H 0.128 0.872 24 H 0.135 0.865 25 H 0.240 0.760 26 H 0.097 0.903 27 H 0.127 0.873 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.391 0.038 -1.764 4.732 hybrid contribution 1.069 0.256 -0.101 1.104 sum -3.322 0.295 -1.866 3.822 Atomic orbital electron populations 1.81210 1.11895 1.12946 1.07200 1.25138 0.91793 0.92281 0.93698 1.13358 0.83058 1.28061 0.89457 1.24870 0.93105 0.92938 0.92103 1.81256 1.08221 1.11908 1.10858 1.22734 0.93217 0.80006 0.94811 1.18006 0.90772 1.19310 0.98863 1.20848 0.94068 0.93999 0.95018 1.20103 0.93325 1.11393 0.99424 1.18061 0.83512 0.96817 0.94777 1.41313 1.03219 1.47331 1.17322 1.20155 0.90805 1.35392 0.96734 0.86619 1.25631 0.96508 0.96594 0.99329 1.69607 1.08684 1.41301 1.29560 0.85641 0.78854 0.79405 0.79499 1.19429 1.20057 1.18540 1.19950 0.94998 1.12365 0.98854 1.20442 0.92969 0.94337 0.95325 0.84595 0.87202 0.86483 0.75975 0.90254 0.87332 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.21 18.54 41.83 0.78 -6.43 15 2 C 0.28 4.01 15.33 -22.48 -0.34 3.67 15 3 C -0.13 -1.75 5.72 -106.17 -0.61 -2.35 15 4 C 0.28 4.59 11.61 -22.47 -0.26 4.33 15 5 N -0.45 -8.18 17.92 41.84 0.75 -7.43 15 6 C 0.12 1.43 9.61 -36.46 -0.35 1.08 15 7 C -0.26 -4.00 5.59 -105.06 -0.59 -4.59 15 8 C -0.02 -0.32 8.26 -39.43 -0.33 -0.64 15 9 C -0.22 -4.25 9.23 -39.75 -0.37 -4.62 15 10 C 0.20 3.89 6.62 -83.86 -0.56 3.33 15 11 N -0.50 -10.60 5.40 -9.58 -0.05 -10.65 15 12 C -0.30 -6.70 9.54 -15.15 -0.14 -6.84 15 13 H 0.12 2.51 5.64 -52.49 -0.30 2.21 15 14 C 0.03 0.62 5.50 -17.44 -0.10 0.52 15 15 N -0.86 -19.76 13.05 55.50 0.72 -19.04 15 16 Si 0.94 17.36 29.55 -169.99 -5.02 12.34 15 17 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 18 H -0.28 -5.05 7.11 56.52 0.40 -4.64 15 19 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 20 C -0.24 -4.02 9.83 -39.75 -0.39 -4.41 15 21 C -0.01 -0.15 9.75 -39.43 -0.38 -0.53 15 22 H 0.14 1.15 8.06 -52.49 -0.42 0.73 15 23 H 0.11 1.88 5.35 -52.48 -0.28 1.60 15 24 H 0.12 2.32 5.92 -52.48 -0.31 2.01 15 25 H 0.40 8.50 7.88 -40.82 -0.32 8.18 15 26 H 0.29 6.18 8.31 -40.82 -0.34 5.84 15 27 H 0.11 1.66 8.06 -52.49 -0.42 1.24 15 28 H 0.11 1.26 8.06 -52.49 -0.42 0.83 15 LS Contribution 269.65 15.07 4.06 4.06 Total: -1.00 -24.35 269.65 -4.79 -29.14 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -1.61 Total: 9.06 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -4.41 Total: -11.05 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 2.20 Total: -43.55 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.02 Total: 12.34 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -24.35 -4.79 -29.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183679.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.196 kcal (2) G-P(sol) polarization free energy of solvation -24.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds