Wall clock time and date at job start Sun Mar 29 2020 22:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43202 * 120.00168 * 278.79482 * 3 2 1 5 5 N 3.51038 * 140.68834 * 278.80183 * 2 1 3 6 6 C 1.37910 * 119.99983 * 98.52427 * 3 2 1 7 7 C 1.46311 * 119.99853 * 173.15837 * 6 3 2 8 8 C 1.40353 * 120.10414 * 330.53754 * 7 6 3 9 9 C 1.36448 * 119.89842 * 179.75948 * 8 7 6 10 10 C 1.39518 * 120.10198 * 0.49452 * 9 8 7 11 11 N 1.38565 * 119.90038 * 179.74012 * 10 9 8 12 12 C 1.36597 * 119.99577 * 0.02562 * 11 10 9 13 13 H 1.08001 * 120.00423 * 0.02562 * 12 11 10 14 14 C 1.38978 * 119.99466 * 180.02562 * 12 11 10 15 15 N 1.31457 * 120.00368 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99996 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47384 * 89.99485 * 16 14 12 18 18 H 1.48496 * 109.47385 * 209.99878 * 16 14 12 19 19 H 1.48505 * 109.47089 * 329.99830 * 16 14 12 20 20 C 1.39519 * 120.19846 * 359.76331 * 10 9 8 21 21 C 1.36443 * 120.10513 * 359.97438 * 20 10 9 22 22 H 1.07994 * 120.00031 * 353.16146 * 6 3 2 23 23 H 1.08006 * 120.05332 * 0.02562 * 8 7 6 24 24 H 1.08005 * 119.95218 * 180.23104 * 9 8 7 25 25 H 0.96994 * 119.99596 * 180.02562 * 11 10 9 26 26 H 0.96992 * 120.00297 * 180.02562 * 15 14 12 27 27 H 1.07997 * 119.94483 * 179.97438 * 20 10 9 28 28 H 1.07997 * 120.05261 * 179.97438 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2840 -0.1887 1.2256 5 7 3.8519 -0.3403 2.1978 6 6 3.2574 0.1780 -1.1811 7 6 4.7126 0.3286 -1.1632 8 6 5.3477 0.8985 -0.0489 9 6 6.7055 1.0325 -0.0345 10 6 7.4615 0.6133 -1.1296 11 7 8.8397 0.7563 -1.1128 12 6 9.4560 1.3064 -0.0250 13 1 8.8692 1.6295 0.8222 14 6 10.8382 1.4502 -0.0084 15 7 11.5525 1.0564 -1.0393 16 14 11.6813 2.2018 1.4795 17 1 12.0301 1.1290 2.4453 18 1 12.9184 2.9002 1.0472 19 1 10.7654 3.1738 2.1289 20 6 6.8341 0.0511 -2.2417 21 6 5.4773 -0.0916 -2.2627 22 1 2.7231 0.2058 -2.1193 23 1 4.7629 1.2267 0.7978 24 1 7.1954 1.4675 0.8241 25 1 9.3666 0.4657 -1.8735 26 1 12.5172 1.1565 -1.0276 27 1 7.4233 -0.2715 -3.0873 28 1 4.9925 -0.5265 -3.1241 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183679.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:08 Heat of formation + Delta-G solvation = 87.524510 kcal Electronic energy + Delta-G solvation = -14812.235051 eV Core-core repulsion = 12214.170533 eV Total energy + Delta-G solvation = -2598.064518 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.40983 -38.63847 -37.26338 -36.88386 -34.66400 -33.33317 -31.75455 -29.69924 -26.95512 -24.80935 -23.37297 -21.95146 -20.97873 -19.61339 -18.45996 -17.22240 -16.60983 -15.91405 -15.77666 -15.33258 -14.95644 -14.68566 -14.55415 -14.27240 -14.11802 -14.02299 -13.72856 -13.51698 -13.35480 -13.09956 -12.98962 -12.58924 -12.24921 -12.17117 -12.08993 -11.42557 -10.91891 -10.10113 -9.74949 -8.67240 -8.35727 -5.82936 -0.45544 0.94841 1.08807 1.38828 1.47014 1.50035 1.54396 1.86969 1.95482 2.17975 2.72259 2.91796 2.98315 3.30331 3.38564 3.55217 4.13848 4.27721 4.33471 4.68679 4.79802 4.98066 5.06552 5.11651 5.29168 5.40539 5.61513 5.80883 5.84607 5.94593 6.37846 6.55976 6.64899 6.73196 7.29645 7.42470 8.48718 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.039479 B = 0.004997 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.066071 B = 5602.465854 C = 6197.200392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.304 3.696 3 C -0.106 4.106 4 C 0.290 3.710 5 N -0.482 5.482 6 C 0.158 3.842 7 C -0.252 4.252 8 C -0.022 4.022 9 C -0.250 4.250 10 C 0.205 3.795 11 N -0.545 5.545 12 C -0.327 4.327 13 H 0.105 0.895 14 C -0.017 4.017 15 N -0.908 5.908 16 Si 0.995 3.005 17 H -0.273 1.273 18 H -0.274 1.274 19 H -0.262 1.262 20 C -0.252 4.252 21 C 0.008 3.992 22 H 0.198 0.802 23 H 0.111 0.889 24 H 0.097 0.903 25 H 0.399 0.601 26 H 0.282 0.718 27 H 0.124 0.876 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 -0.590 -5.009 9.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.009 4.009 3 C -0.115 4.115 4 C -0.023 4.023 5 N -0.160 5.160 6 C 0.132 3.868 7 C -0.257 4.257 8 C -0.043 4.043 9 C -0.274 4.274 10 C 0.080 3.920 11 N -0.142 5.142 12 C -0.457 4.457 13 H 0.123 0.877 14 C -0.219 4.219 15 N -0.544 5.544 16 Si 0.818 3.182 17 H -0.198 1.198 18 H -0.199 1.199 19 H -0.186 1.186 20 C -0.276 4.276 21 C -0.012 4.012 22 H 0.215 0.785 23 H 0.129 0.871 24 H 0.115 0.885 25 H 0.233 0.767 26 H 0.092 0.908 27 H 0.142 0.858 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.972 -0.718 -3.359 9.607 hybrid contribution 1.507 0.337 0.392 1.593 sum -7.465 -0.381 -2.967 8.042 Atomic orbital electron populations 1.81282 1.12626 1.13231 1.07765 1.24876 0.91354 0.91619 0.93066 1.13417 0.82804 1.26658 0.88662 1.25373 0.92522 0.92073 0.92335 1.81307 1.09493 1.12924 1.12237 1.23201 0.91285 0.75861 0.96438 1.18410 0.92651 1.16885 0.97718 1.21018 0.93290 0.93990 0.95976 1.20163 0.94506 1.13201 0.99520 1.18575 0.83480 0.94703 0.95262 1.41103 1.03412 1.52108 1.17552 1.20097 0.91172 1.37096 0.97313 0.87709 1.26206 0.96845 0.97577 1.01251 1.69679 1.08248 1.45325 1.31193 0.84869 0.77858 0.78439 0.77071 1.19835 1.19919 1.18630 1.20324 0.96484 1.12302 0.98473 1.20982 0.91839 0.92040 0.96308 0.78548 0.87121 0.88494 0.76685 0.90810 0.85799 0.81523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.64 18.54 19.00 0.35 -12.28 15 2 C 0.30 6.84 15.33 88.33 1.35 8.20 15 3 C -0.11 -2.22 5.72 -20.86 -0.12 -2.33 15 4 C 0.29 8.33 11.61 88.33 1.03 9.35 15 5 N -0.48 -16.76 17.92 19.01 0.34 -16.42 15 6 C 0.16 2.55 9.61 24.29 0.23 2.78 15 7 C -0.25 -6.20 5.59 -20.15 -0.11 -6.32 15 8 C -0.02 -0.73 8.26 22.37 0.18 -0.54 15 9 C -0.25 -9.85 9.23 22.16 0.20 -9.65 15 10 C 0.20 8.13 6.62 38.70 0.26 8.38 15 11 N -0.54 -24.71 5.40 -184.22 -0.99 -25.70 15 12 C -0.33 -15.91 9.54 84.13 0.80 -15.10 15 13 H 0.11 5.04 5.64 -2.91 -0.02 5.02 15 14 C -0.02 -0.80 5.50 84.93 0.47 -0.33 15 15 N -0.91 -45.48 13.05 21.67 0.28 -45.19 15 16 Si 0.99 38.58 29.55 68.60 2.03 40.61 15 17 H -0.27 -10.50 7.11 99.48 0.71 -9.79 15 18 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 19 H -0.26 -9.91 7.11 99.48 0.71 -9.20 15 20 C -0.25 -7.87 9.83 22.16 0.22 -7.65 15 21 C 0.01 0.19 9.75 22.37 0.22 0.41 15 22 H 0.20 1.19 8.06 -2.91 -0.02 1.17 15 23 H 0.11 3.56 5.35 -2.91 -0.02 3.55 15 24 H 0.10 4.15 5.92 -2.91 -0.02 4.13 15 25 H 0.40 18.16 7.88 -92.71 -0.73 17.43 15 26 H 0.28 13.30 8.31 -92.71 -0.77 12.53 15 27 H 0.12 3.51 8.06 -2.91 -0.02 3.49 15 28 H 0.17 2.23 8.06 -2.91 -0.02 2.20 15 Total: -1.00 -58.15 269.65 7.24 -50.91 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.50 Total: 20.89 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 4.73 Total: -12.81 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -0.02 Total: -99.60 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -58.15 7.24 -50.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183679.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.432 kcal (2) G-P(sol) polarization free energy of solvation -58.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds