Wall clock time and date at job start Sun Mar 29 2020 21:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35911 * 116.99748 * 2 1 4 4 C 1.38940 * 120.42876 * 359.71488 * 3 2 1 5 5 C 1.39363 * 118.29868 * 180.28036 * 4 3 2 6 6 N 1.39281 * 120.47764 * 180.02562 * 5 4 3 7 7 C 1.32634 * 119.99713 * 179.97438 * 6 5 4 8 8 H 1.07995 * 120.00562 * 359.97438 * 7 6 5 9 9 C 1.46805 * 119.99850 * 180.02562 * 7 6 5 10 10 N 1.29332 * 120.00134 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00083 * 179.97438 * 9 7 6 12 12 H 1.48490 * 109.47183 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.47069 * 119.99811 * 11 9 7 14 14 H 1.48499 * 109.47225 * 239.99708 * 11 9 7 15 15 C 1.39150 * 119.04417 * 359.97438 * 5 4 3 16 16 N 1.31736 * 120.75016 * 0.02562 * 15 5 4 17 17 C 1.31874 * 121.87572 * 0.02562 * 16 15 5 18 18 N 1.48019 * 119.56115 * 179.97438 * 17 16 15 19 19 O 1.31699 * 119.99884 * 180.02562 * 18 17 16 20 20 O 1.31694 * 119.99861 * 0.02562 * 18 17 16 21 21 H 1.09003 * 109.47349 * 300.00481 * 1 2 3 22 22 H 1.09005 * 109.47045 * 60.00796 * 1 2 3 23 23 H 1.09003 * 109.47185 * 180.02562 * 1 2 3 24 24 H 1.08005 * 120.84933 * 0.25875 * 4 3 2 25 25 H 0.96996 * 119.99834 * 359.97160 * 6 5 4 26 26 H 0.96996 * 120.00145 * 179.97438 * 10 9 7 27 27 H 1.07991 * 119.62539 * 180.02562 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2980 2.3818 -0.0060 5 6 1.9764 3.5992 -0.0117 6 7 1.2717 4.8006 -0.0173 7 6 1.9270 5.9537 -0.0222 8 1 3.0069 5.9612 -0.0215 9 6 1.1843 7.2200 -0.0275 10 7 -0.1090 7.2112 -0.0278 11 14 2.1071 8.8441 -0.0337 12 1 3.5689 8.5828 -0.0329 13 1 1.7434 9.6155 -1.2495 14 1 1.7426 9.6252 1.1755 15 6 3.3679 3.5972 -0.0107 16 7 4.0398 2.4641 -0.0050 17 6 3.4317 1.2939 -0.0004 18 7 4.2374 0.0522 0.0054 19 8 3.6391 -1.1210 0.0094 20 8 5.5526 0.1208 0.0065 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 0.2184 2.3494 -0.0065 25 1 0.3017 4.7939 -0.0176 26 1 -0.5998 8.0478 -0.0310 27 1 3.9031 4.5351 -0.0147 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186788.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:07 Heat of formation + Delta-G solvation = 21.269971 kcal Electronic energy + Delta-G solvation = -16465.593971 eV Core-core repulsion = 13421.514427 eV Total energy + Delta-G solvation = -3044.079545 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.07968 -38.07429 -37.21665 -36.12857 -33.58014 -32.73510 -30.64640 -29.64519 -27.08267 -25.90864 -24.73194 -22.27923 -21.46721 -19.31675 -18.08015 -17.44872 -16.73877 -16.03225 -15.87662 -15.54188 -15.02608 -14.72502 -14.40036 -14.12545 -13.33388 -13.16935 -12.92903 -12.17725 -12.06065 -11.50169 -11.45791 -11.23240 -11.00301 -10.95520 -10.01250 -9.78778 -9.65547 -9.29641 -9.04573 -8.49936 -8.01345 -7.70678 -4.47360 0.62407 2.11055 2.14351 2.52348 2.61079 2.61620 2.63985 3.17210 3.62990 3.74814 4.15472 4.52072 5.27516 5.31634 5.42034 5.47882 5.63784 5.73798 5.76941 5.87492 6.33613 6.42778 6.57370 6.94654 7.23255 7.27276 7.77916 8.07277 8.20002 8.29888 8.84437 9.03891 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035915 B = 0.006219 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.440966 B = 4501.062176 C = 5265.358013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.285 6.285 3 C 0.204 3.796 4 C -0.304 4.304 5 C 0.084 3.916 6 N -0.413 5.413 7 C -0.290 4.290 8 H 0.138 0.862 9 C 0.043 3.957 10 N -0.781 5.781 11 Si 0.953 3.047 12 H -0.247 1.247 13 H -0.264 1.264 14 H -0.264 1.264 15 C 0.061 3.939 16 N -0.381 5.381 17 C 0.012 3.988 18 N 0.048 4.952 19 O -0.273 6.273 20 O -0.279 6.279 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.097 0.903 24 H 0.130 0.870 25 H 0.407 0.593 26 H 0.309 0.691 27 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.346 5.641 -0.027 8.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.194 6.194 3 C 0.150 3.850 4 C -0.333 4.333 5 C -0.051 4.051 6 N 0.000 5.000 7 C -0.428 4.428 8 H 0.156 0.844 9 C -0.181 4.181 10 N -0.406 5.406 11 Si 0.774 3.226 12 H -0.169 1.169 13 H -0.189 1.189 14 H -0.189 1.189 15 C -0.124 4.124 16 N -0.093 5.093 17 C -0.208 4.208 18 N 0.482 4.518 19 O -0.434 6.434 20 O -0.443 6.443 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.115 0.885 24 H 0.148 0.852 25 H 0.243 0.757 26 H 0.122 0.878 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.764 5.755 -0.029 8.145 hybrid contribution -1.269 0.583 0.000 1.397 sum -7.033 6.338 -0.028 9.468 Atomic orbital electron populations 1.23062 0.79358 1.03516 1.01146 1.86420 1.20488 1.25582 1.86889 1.18786 0.89548 0.85016 0.91641 1.20076 0.98653 0.89550 1.25002 1.18184 0.92470 0.84991 1.09487 1.40455 1.09801 1.03675 1.46090 1.21688 0.95231 0.81994 1.43931 0.84423 1.27580 0.95385 1.02226 0.92879 1.68610 1.08415 1.33530 1.30045 0.85377 0.80837 0.76874 0.79497 1.16929 1.18855 1.18851 1.21741 0.89119 0.94108 1.07450 1.66017 1.39663 0.96251 1.07418 1.18652 0.83101 0.84189 1.34820 1.49586 1.02243 1.02742 0.97226 1.96156 1.73737 1.11138 1.62344 1.96127 0.90204 1.95978 1.61970 0.92835 0.92827 0.88457 0.85211 0.75671 0.87811 0.82164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.83 101.05 0.99 1.34 15 2 O -0.28 -5.83 8.40 -41.71 -0.35 -6.18 15 3 C 0.20 4.45 6.69 -39.11 -0.26 4.19 15 4 C -0.30 -5.77 9.01 -38.90 -0.35 -6.12 15 5 C 0.08 1.62 6.62 -83.72 -0.55 1.06 15 6 N -0.41 -7.34 5.30 -8.32 -0.04 -7.38 15 7 C -0.29 -5.09 9.81 -13.74 -0.13 -5.23 15 8 H 0.14 2.28 5.73 -52.49 -0.30 1.98 15 9 C 0.04 0.72 5.70 -15.14 -0.09 0.63 15 10 N -0.78 -13.55 13.08 56.00 0.73 -12.81 15 11 Si 0.95 12.85 29.65 -169.99 -5.04 7.81 15 12 H -0.25 -3.33 7.11 56.52 0.40 -2.92 15 13 H -0.26 -3.60 7.11 56.52 0.40 -3.20 15 14 H -0.26 -3.60 7.11 56.52 0.40 -3.20 15 15 C 0.06 1.25 10.46 -17.25 -0.18 1.07 15 16 N -0.38 -9.07 10.05 -9.94 -0.10 -9.17 15 17 C 0.01 0.30 7.83 -145.96 -1.14 -0.85 15 18 N 0.05 1.31 4.98 32.99 0.16 1.48 15 19 O -0.27 -7.44 17.85 -39.25 -0.70 -8.14 15 20 O -0.28 -7.91 19.75 -31.56 -0.62 -8.54 15 21 H 0.05 0.67 7.70 -51.93 -0.40 0.27 15 22 H 0.05 0.68 7.69 -51.93 -0.40 0.28 15 23 H 0.10 1.12 8.14 -51.93 -0.42 0.70 15 24 H 0.13 2.06 6.44 -52.48 -0.34 1.72 15 25 H 0.41 6.95 7.99 -40.82 -0.33 6.62 15 26 H 0.31 4.78 8.26 -40.82 -0.34 4.45 15 27 H 0.16 2.83 5.96 -52.49 -0.31 2.52 15 LS Contribution 254.25 15.07 3.83 3.83 Total: -1.00 -28.32 254.25 -5.48 -33.80 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -1.63 Total: 9.20 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.72 Total: -3.89 kcal Atomic # 7 Polarization: -28.65 SS G_CDS: 0.75 Total: -27.89 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -1.67 Total: -22.86 kcal Atomic # 14 Polarization: 12.85 SS G_CDS: -5.04 Total: 7.81 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.32 -5.48 -33.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186788.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.066 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds