Wall clock time and date at job start Sun Mar 29 2020 21:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35911 * 116.99748 * 2 1 4 4 C 1.38940 * 120.42876 * 359.71488 * 3 2 1 5 5 C 1.39363 * 118.29868 * 180.28036 * 4 3 2 6 6 N 1.39281 * 120.47764 * 180.02562 * 5 4 3 7 7 C 1.32634 * 119.99713 * 179.97438 * 6 5 4 8 8 H 1.07995 * 120.00562 * 359.97438 * 7 6 5 9 9 C 1.46805 * 119.99850 * 180.02562 * 7 6 5 10 10 N 1.29332 * 120.00134 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00083 * 179.97438 * 9 7 6 12 12 H 1.48490 * 109.47183 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.47069 * 119.99811 * 11 9 7 14 14 H 1.48499 * 109.47225 * 239.99708 * 11 9 7 15 15 C 1.39150 * 119.04417 * 359.97438 * 5 4 3 16 16 N 1.31736 * 120.75016 * 0.02562 * 15 5 4 17 17 C 1.31874 * 121.87572 * 0.02562 * 16 15 5 18 18 N 1.48019 * 119.56115 * 179.97438 * 17 16 15 19 19 O 1.31699 * 119.99884 * 180.02562 * 18 17 16 20 20 O 1.31694 * 119.99861 * 0.02562 * 18 17 16 21 21 H 1.09003 * 109.47349 * 300.00481 * 1 2 3 22 22 H 1.09005 * 109.47045 * 60.00796 * 1 2 3 23 23 H 1.09003 * 109.47185 * 180.02562 * 1 2 3 24 24 H 1.08005 * 120.84933 * 0.25875 * 4 3 2 25 25 H 0.96996 * 119.99834 * 359.97160 * 6 5 4 26 26 H 0.96996 * 120.00145 * 179.97438 * 10 9 7 27 27 H 1.07991 * 119.62539 * 180.02562 * 15 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2980 2.3818 -0.0060 5 6 1.9764 3.5992 -0.0117 6 7 1.2717 4.8006 -0.0173 7 6 1.9270 5.9537 -0.0222 8 1 3.0069 5.9612 -0.0215 9 6 1.1843 7.2200 -0.0275 10 7 -0.1090 7.2112 -0.0278 11 14 2.1071 8.8441 -0.0337 12 1 3.5689 8.5828 -0.0329 13 1 1.7434 9.6155 -1.2495 14 1 1.7426 9.6252 1.1755 15 6 3.3679 3.5972 -0.0107 16 7 4.0398 2.4641 -0.0050 17 6 3.4317 1.2939 -0.0004 18 7 4.2374 0.0522 0.0054 19 8 3.6391 -1.1210 0.0094 20 8 5.5526 0.1208 0.0065 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 0.2184 2.3494 -0.0065 25 1 0.3017 4.7939 -0.0176 26 1 -0.5998 8.0478 -0.0310 27 1 3.9031 4.5351 -0.0147 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186788.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:06 Heat of formation + Delta-G solvation = -1.266615 kcal Electronic energy + Delta-G solvation = -16466.571231 eV Core-core repulsion = 13421.514427 eV Total energy + Delta-G solvation = -3045.056804 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.44821 -39.70936 -38.39800 -37.38064 -35.61777 -33.55128 -32.10437 -30.98025 -28.15410 -27.73513 -26.25733 -23.72437 -22.89395 -21.20430 -19.54258 -18.60236 -18.17600 -17.56614 -17.26675 -16.68569 -16.38638 -16.37121 -15.52860 -15.43643 -15.08673 -14.33338 -14.30251 -13.75171 -13.59113 -13.20577 -12.81683 -12.28061 -12.15670 -12.01348 -11.55032 -10.78177 -10.70475 -10.67420 -10.23515 -10.03437 -10.01336 -9.25670 -6.12933 -1.04899 0.62855 0.90173 1.17990 1.45052 1.69383 1.82999 2.05341 2.10577 2.24954 2.61843 3.10034 3.52186 3.90028 4.05562 4.19822 4.34532 4.38378 4.41983 4.65298 4.67445 4.82813 5.13756 5.16534 5.54278 6.05837 6.10388 6.43567 6.87688 6.93638 7.21219 7.81239 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035915 B = 0.006219 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.440966 B = 4501.062176 C = 5265.358013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.088 3.912 4 C -0.197 4.197 5 C -0.118 4.118 6 N -0.332 5.332 7 C -0.019 4.019 8 H 0.201 0.799 9 C 0.007 3.993 10 N -0.679 5.679 11 Si 1.027 2.973 12 H -0.229 1.229 13 H -0.254 1.254 14 H -0.254 1.254 15 C 0.162 3.838 16 N -0.504 5.504 17 C 0.074 3.926 18 N 0.015 4.985 19 O -0.518 6.518 20 O -0.546 6.546 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.104 0.896 24 H 0.162 0.838 25 H 0.428 0.572 26 H 0.355 0.645 27 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.376 26.476 -0.123 30.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.036 3.964 4 C -0.223 4.223 5 C -0.240 4.240 6 N 0.086 4.914 7 C -0.187 4.187 8 H 0.218 0.782 9 C -0.230 4.230 10 N -0.302 5.302 11 Si 0.841 3.159 12 H -0.150 1.150 13 H -0.178 1.178 14 H -0.178 1.178 15 C -0.026 4.026 16 N -0.220 5.220 17 C -0.160 4.160 18 N 0.350 4.650 19 O -0.612 6.612 20 O -0.639 6.639 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.122 0.878 24 H 0.179 0.821 25 H 0.268 0.732 26 H 0.172 0.828 27 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -14.369 25.295 -0.119 29.091 hybrid contribution -1.049 -0.483 0.004 1.154 sum -15.418 24.812 -0.114 29.212 Atomic orbital electron populations 1.23314 0.77633 1.04715 1.02199 1.86464 1.22556 1.26444 1.88238 1.18807 0.89177 0.86246 1.02150 1.20297 0.99333 0.88439 1.14258 1.17426 0.91780 0.84186 1.30651 1.41374 1.12220 1.04500 1.33291 1.24916 1.00080 0.82273 1.11475 0.78245 1.29198 0.96577 1.04335 0.92860 1.68539 1.09788 1.39124 1.12774 0.84269 0.80501 0.70722 0.80418 1.15022 1.17760 1.17751 1.22589 0.89552 0.94813 0.95625 1.66235 1.40388 0.96786 1.18580 1.19418 0.85011 0.84199 1.27395 1.48724 1.00414 1.01865 1.14039 1.95833 1.73700 1.13814 1.77845 1.95792 0.93424 1.96150 1.78584 0.91322 0.91302 0.87791 0.82097 0.73167 0.82775 0.78449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.83 113.37 1.11 1.65 15 2 O -0.33 -17.24 8.40 -71.27 -0.60 -17.84 15 3 C 0.09 4.62 6.69 22.58 0.15 4.77 15 4 C -0.20 -7.22 9.01 22.71 0.20 -7.01 15 5 C -0.12 -3.61 6.62 38.45 0.25 -3.36 15 6 N -0.33 -6.06 5.30 -180.22 -0.96 -7.02 15 7 C -0.02 -0.24 9.81 86.81 0.85 0.61 15 8 H 0.20 1.68 5.73 -2.91 -0.02 1.66 15 9 C 0.01 0.06 5.70 87.30 0.50 0.56 15 10 N -0.68 -7.62 13.08 23.26 0.30 -7.32 15 11 Si 1.03 5.64 29.65 68.60 2.03 7.68 15 12 H -0.23 -1.31 7.11 99.48 0.71 -0.60 15 13 H -0.25 -1.77 7.11 99.48 0.71 -1.07 15 14 H -0.25 -1.77 7.11 99.48 0.71 -1.06 15 15 C 0.16 5.94 10.46 84.93 0.89 6.83 15 16 N -0.50 -27.67 10.05 -185.36 -1.86 -29.53 15 17 C 0.07 4.70 7.83 129.78 1.02 5.71 15 18 N 0.02 1.19 4.98 -49.55 -0.25 0.94 15 19 O -0.52 -41.88 17.85 10.87 0.19 -41.68 15 20 O -0.55 -45.39 19.75 3.52 0.07 -45.32 15 21 H 0.07 1.91 7.70 -2.39 -0.02 1.90 15 22 H 0.07 1.92 7.69 -2.38 -0.02 1.90 15 23 H 0.10 3.10 8.14 -2.39 -0.02 3.08 15 24 H 0.16 4.36 6.44 -2.91 -0.02 4.34 15 25 H 0.43 6.44 7.99 -92.71 -0.74 5.69 15 26 H 0.35 2.63 8.26 -92.71 -0.77 1.86 15 27 H 0.20 4.73 5.96 -2.92 -0.02 4.71 15 Total: -1.00 -112.32 254.25 4.42 -107.90 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.51 Total: 22.42 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 4.98 Total: 9.77 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: -2.76 Total: -42.92 kcal Atomic # 8 Polarization: -104.51 SS G_CDS: -0.33 Total: -104.85 kcal Atomic # 14 Polarization: 5.64 SS G_CDS: 2.03 Total: 7.68 kcal Total: -112.32 4.42 -107.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186788.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.631 kcal (2) G-P(sol) polarization free energy of solvation -112.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds