Wall clock time and date at job start Sun Mar 29 2020 22:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 N 1.32355 * 120.14746 * 15.14456 * 3 2 1 5 5 C 1.32144 * 122.67082 * 179.97438 * 4 3 2 6 6 C 1.36539 * 122.01414 * 359.97438 * 5 4 3 7 7 C 1.40726 * 118.88348 * 0.02562 * 6 5 4 8 8 C 1.40066 * 122.09386 * 179.97438 * 7 6 5 9 9 C 1.38144 * 119.29186 * 180.02562 * 8 7 6 10 10 N 1.39095 * 119.68330 * 179.97438 * 9 8 7 11 11 C 1.36796 * 119.99720 * 353.60317 * 10 9 8 12 12 H 1.08009 * 120.00132 * 5.26006 * 11 10 9 13 13 C 1.38838 * 119.99934 * 185.26157 * 11 10 9 14 14 N 1.31552 * 119.99841 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99715 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47591 * 59.99979 * 15 13 11 17 17 H 1.48505 * 109.46689 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46935 * 299.99155 * 15 13 11 19 19 C 1.40189 * 120.63585 * 0.02562 * 9 8 7 20 20 C 1.36000 * 120.97779 * 359.97438 * 19 9 8 21 21 C 1.40194 * 119.81623 * 0.25021 * 20 19 9 22 22 H 1.07992 * 118.99330 * 180.02562 * 5 4 3 23 23 H 1.08001 * 120.55902 * 179.97438 * 6 5 4 24 24 H 1.08000 * 120.35212 * 0.02562 * 8 7 6 25 25 H 0.96996 * 120.00022 * 173.59964 * 10 9 8 26 26 H 0.97003 * 120.00058 * 179.97438 * 14 13 11 27 27 H 1.08003 * 119.51291 * 179.97438 * 19 9 8 28 28 H 1.08000 * 120.09529 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2332 -1.1038 -0.2990 5 6 4.5534 -1.1593 -0.3147 6 6 5.3270 -0.0730 -0.0219 7 6 4.6968 1.1416 0.3069 8 6 5.4245 2.2970 0.6190 9 6 4.7462 3.4585 0.9340 10 7 5.4608 4.6104 1.2457 11 6 6.8223 4.5587 1.3677 12 1 7.3507 3.6448 1.1393 13 6 7.5250 5.6810 1.7852 14 7 6.8815 6.7943 2.0629 15 14 9.3843 5.6105 1.9512 16 1 9.9866 5.2792 0.6349 17 1 9.8907 6.9293 2.4089 18 1 9.7536 4.5672 2.9413 19 6 3.3447 3.4871 0.9435 20 6 2.6198 2.3761 0.6435 21 6 3.2774 1.1799 0.3241 22 1 5.0351 -2.0921 -0.5676 23 1 6.4044 -0.1448 -0.0414 24 1 6.5044 2.2799 0.6134 25 1 4.9937 5.4504 1.3764 26 1 7.3724 7.5783 2.3550 27 1 2.8329 4.4049 1.1928 28 1 1.5405 2.4141 0.6556 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187540.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:32 Heat of formation + Delta-G solvation = 82.055750 kcal Electronic energy + Delta-G solvation = -15229.093002 eV Core-core repulsion = 12630.791341 eV Total energy + Delta-G solvation = -2598.301661 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.16271 -37.64072 -36.23831 -34.97666 -32.40593 -32.18431 -29.74408 -28.25184 -25.54771 -23.96405 -22.85022 -21.60481 -19.07756 -17.98077 -17.04551 -16.78228 -15.42199 -15.30680 -14.53039 -14.30204 -14.10851 -13.58273 -13.04534 -12.88004 -12.75294 -12.52867 -12.22571 -12.14910 -12.12649 -11.57607 -11.37667 -10.97214 -10.64990 -10.43307 -10.11675 -9.49483 -9.10090 -9.09938 -7.86185 -7.00723 -6.91760 -4.08413 0.62259 1.72409 2.35108 2.82227 2.94697 2.96809 2.98428 3.22986 3.74150 3.83890 3.91869 4.59702 4.80199 4.94065 5.11289 5.29746 5.48363 5.67171 5.73336 5.84247 6.02526 6.25197 6.45568 6.64618 6.73241 6.87065 6.99534 7.15937 7.24719 7.39304 7.61244 7.66659 8.31840 8.37437 8.87557 9.07098 10.13574 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.039142 B = 0.005771 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.174952 B = 4850.490530 C = 5550.544577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.286 3.714 3 C 0.226 3.774 4 N -0.504 5.504 5 C 0.084 3.916 6 C -0.173 4.173 7 C 0.050 3.950 8 C -0.270 4.270 9 C 0.193 3.807 10 N -0.525 5.525 11 C -0.295 4.295 12 H 0.112 0.888 13 C 0.025 3.975 14 N -0.871 5.871 15 Si 0.939 3.061 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.267 1.267 19 C -0.144 4.144 20 C -0.075 4.075 21 C -0.144 4.144 22 H 0.147 0.853 23 H 0.130 0.870 24 H 0.124 0.876 25 H 0.402 0.598 26 H 0.284 0.716 27 H 0.116 0.884 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 -4.947 -1.625 5.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.031 4.031 3 C 0.079 3.921 4 N -0.218 5.218 5 C -0.062 4.062 6 C -0.195 4.195 7 C 0.043 3.957 8 C -0.299 4.299 9 C 0.067 3.933 10 N -0.120 5.120 11 C -0.425 4.425 12 H 0.130 0.870 13 C -0.182 4.182 14 N -0.505 5.505 15 Si 0.764 3.236 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.192 1.192 19 C -0.165 4.165 20 C -0.097 4.097 21 C -0.152 4.152 22 H 0.164 0.836 23 H 0.148 0.852 24 H 0.142 0.858 25 H 0.237 0.763 26 H 0.094 0.906 27 H 0.134 0.866 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.230 -5.321 -1.692 5.718 hybrid contribution 1.647 1.259 0.399 2.111 sum 0.417 -4.062 -1.293 4.284 Atomic orbital electron populations 1.81160 1.11756 1.08255 1.08537 1.25202 0.91948 0.92567 0.93356 1.16371 0.84986 0.90666 1.00078 1.67133 1.10631 1.26744 1.17320 1.21763 0.88006 0.98276 0.98118 1.21842 1.00698 0.93241 1.03751 1.17605 0.90866 0.93636 0.93544 1.19951 0.98839 0.91472 1.19605 1.17782 0.90052 0.87966 0.97515 1.41241 1.06851 1.07213 1.56736 1.19966 0.81699 0.99761 1.41124 0.87002 1.25532 1.02055 0.94637 0.95949 1.69653 1.38040 1.02144 1.40635 0.85753 0.80135 0.78214 0.79490 1.19192 1.20385 1.19156 1.20471 0.92457 0.98741 1.04873 1.20369 0.98474 0.91841 0.98986 1.18127 0.93544 0.93695 1.09820 0.83554 0.85224 0.85781 0.76293 0.90630 0.86630 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.37 18.54 41.84 0.78 -6.60 15 2 C 0.29 4.87 14.27 -22.47 -0.32 4.55 15 3 C 0.23 3.92 6.65 -84.52 -0.56 3.36 15 4 N -0.50 -8.59 10.22 -11.11 -0.11 -8.71 15 5 C 0.08 1.26 11.06 -18.03 -0.20 1.06 15 6 C -0.17 -2.68 9.88 -39.26 -0.39 -3.07 15 7 C 0.05 0.90 5.74 -106.83 -0.61 0.28 15 8 C -0.27 -5.24 9.09 -38.93 -0.35 -5.59 15 9 C 0.19 3.84 6.61 -83.87 -0.55 3.29 15 10 N -0.52 -11.28 5.41 -9.60 -0.05 -11.34 15 11 C -0.30 -6.67 9.54 -15.12 -0.14 -6.82 15 12 H 0.11 2.42 5.67 -52.48 -0.30 2.12 15 13 C 0.03 0.57 5.50 -17.45 -0.10 0.47 15 14 N -0.87 -20.65 13.06 55.49 0.72 -19.93 15 15 Si 0.94 17.60 29.55 -169.99 -5.02 12.58 15 16 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 17 H -0.28 -5.24 7.11 56.52 0.40 -4.84 15 18 H -0.27 -4.96 7.11 56.52 0.40 -4.55 15 19 C -0.14 -2.53 9.79 -39.65 -0.39 -2.92 15 20 C -0.07 -1.27 9.37 -39.65 -0.37 -1.64 15 21 C -0.14 -2.57 5.77 -106.52 -0.61 -3.18 15 22 H 0.15 1.68 8.06 -52.49 -0.42 1.25 15 23 H 0.13 1.70 8.06 -52.49 -0.42 1.28 15 24 H 0.12 2.39 5.94 -52.49 -0.31 2.08 15 25 H 0.40 8.64 7.91 -40.82 -0.32 8.32 15 26 H 0.28 6.35 8.31 -40.82 -0.34 6.01 15 27 H 0.12 1.79 8.06 -52.48 -0.42 1.37 15 28 H 0.12 1.75 7.22 -52.49 -0.38 1.37 15 LS Contribution 260.61 15.07 3.93 3.93 Total: -1.00 -24.32 260.61 -6.08 -30.40 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -1.71 Total: 9.87 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -4.61 Total: -10.21 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 1.33 Total: -46.57 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.02 Total: 12.58 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -24.32 -6.08 -30.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187540.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.457 kcal (2) G-P(sol) polarization free energy of solvation -24.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds