Wall clock time and date at job start Sun Mar 29 2020 22:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 N 1.32355 * 120.14746 * 15.14456 * 3 2 1 5 5 C 1.32144 * 122.67082 * 179.97438 * 4 3 2 6 6 C 1.36539 * 122.01414 * 359.97438 * 5 4 3 7 7 C 1.40726 * 118.88348 * 0.02562 * 6 5 4 8 8 C 1.40066 * 122.09386 * 179.97438 * 7 6 5 9 9 C 1.38144 * 119.29186 * 180.02562 * 8 7 6 10 10 N 1.39095 * 119.68330 * 179.97438 * 9 8 7 11 11 C 1.36796 * 119.99720 * 353.60317 * 10 9 8 12 12 H 1.08009 * 120.00132 * 5.26006 * 11 10 9 13 13 C 1.38838 * 119.99934 * 185.26157 * 11 10 9 14 14 N 1.31552 * 119.99841 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99715 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47591 * 59.99979 * 15 13 11 17 17 H 1.48505 * 109.46689 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46935 * 299.99155 * 15 13 11 19 19 C 1.40189 * 120.63585 * 0.02562 * 9 8 7 20 20 C 1.36000 * 120.97779 * 359.97438 * 19 9 8 21 21 C 1.40194 * 119.81623 * 0.25021 * 20 19 9 22 22 H 1.07992 * 118.99330 * 180.02562 * 5 4 3 23 23 H 1.08001 * 120.55902 * 179.97438 * 6 5 4 24 24 H 1.08000 * 120.35212 * 0.02562 * 8 7 6 25 25 H 0.96996 * 120.00022 * 173.59964 * 10 9 8 26 26 H 0.97003 * 120.00058 * 179.97438 * 14 13 11 27 27 H 1.08003 * 119.51291 * 179.97438 * 19 9 8 28 28 H 1.08000 * 120.09529 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2332 -1.1038 -0.2990 5 6 4.5534 -1.1593 -0.3147 6 6 5.3270 -0.0730 -0.0219 7 6 4.6968 1.1416 0.3069 8 6 5.4245 2.2970 0.6190 9 6 4.7462 3.4585 0.9340 10 7 5.4608 4.6104 1.2457 11 6 6.8223 4.5587 1.3677 12 1 7.3507 3.6448 1.1393 13 6 7.5250 5.6810 1.7852 14 7 6.8815 6.7943 2.0629 15 14 9.3843 5.6105 1.9512 16 1 9.9866 5.2792 0.6349 17 1 9.8907 6.9293 2.4089 18 1 9.7536 4.5672 2.9413 19 6 3.3447 3.4871 0.9435 20 6 2.6198 2.3761 0.6435 21 6 3.2774 1.1799 0.3241 22 1 5.0351 -2.0921 -0.5676 23 1 6.4044 -0.1448 -0.0414 24 1 6.5044 2.2799 0.6134 25 1 4.9937 5.4504 1.3764 26 1 7.3724 7.5783 2.3550 27 1 2.8329 4.4049 1.1928 28 1 1.5405 2.4141 0.6556 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187540.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:32 Heat of formation + Delta-G solvation = 69.441534 kcal Electronic energy + Delta-G solvation = -15229.639995 eV Core-core repulsion = 12630.791341 eV Total energy + Delta-G solvation = -2598.848655 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.58117 -39.10503 -37.62473 -36.44977 -33.89273 -33.63944 -31.15675 -29.72075 -27.09598 -25.38512 -24.24596 -23.07833 -20.50046 -19.49051 -18.47062 -18.23712 -16.83628 -16.78215 -15.93118 -15.69795 -15.57653 -14.99140 -14.42295 -14.33234 -14.16725 -13.93277 -13.67023 -13.60640 -13.53628 -13.01519 -12.83728 -12.48472 -12.12970 -11.88773 -11.60579 -10.89257 -10.65774 -10.47166 -9.25915 -8.58985 -8.43004 -5.77779 -0.74761 0.30714 0.91767 1.44872 1.45206 1.49212 1.54296 1.88483 2.24026 2.40738 2.54059 3.05849 3.28869 3.45490 3.79404 4.00118 4.09308 4.26471 4.45264 4.47600 4.66250 4.87358 5.07198 5.20016 5.25947 5.39031 5.53749 5.64951 5.82134 5.88874 6.13136 6.28136 6.72088 7.01946 7.35066 7.49373 8.57433 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.039142 B = 0.005771 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.174952 B = 4850.490530 C = 5550.544577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.293 3.707 3 C 0.222 3.778 4 N -0.503 5.503 5 C 0.087 3.913 6 C -0.157 4.157 7 C 0.034 3.966 8 C -0.275 4.275 9 C 0.193 3.807 10 N -0.555 5.555 11 C -0.316 4.316 12 H 0.113 0.887 13 C -0.021 4.021 14 N -0.917 5.917 15 Si 0.997 3.003 16 H -0.263 1.263 17 H -0.283 1.283 18 H -0.264 1.264 19 C -0.156 4.156 20 C -0.065 4.065 21 C -0.150 4.150 22 H 0.190 0.810 23 H 0.159 0.841 24 H 0.122 0.878 25 H 0.396 0.604 26 H 0.279 0.721 27 H 0.133 0.867 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 -7.723 -2.379 8.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.023 4.023 3 C 0.074 3.926 4 N -0.216 5.216 5 C -0.059 4.059 6 C -0.179 4.179 7 C 0.028 3.972 8 C -0.303 4.303 9 C 0.070 3.930 10 N -0.155 5.155 11 C -0.446 4.446 12 H 0.131 0.869 13 C -0.222 4.222 14 N -0.554 5.554 15 Si 0.820 3.180 16 H -0.188 1.188 17 H -0.208 1.208 18 H -0.189 1.189 19 C -0.177 4.177 20 C -0.086 4.086 21 C -0.157 4.157 22 H 0.207 0.793 23 H 0.176 0.824 24 H 0.140 0.860 25 H 0.230 0.770 26 H 0.089 0.911 27 H 0.151 0.849 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.397 -8.166 -2.467 8.644 hybrid contribution 1.428 1.607 0.475 2.201 sum 0.031 -6.559 -1.991 6.855 Atomic orbital electron populations 1.81184 1.11991 1.08496 1.08844 1.25109 0.91782 0.92324 0.93069 1.16357 0.85074 0.90634 1.00540 1.67221 1.11902 1.26494 1.15972 1.22440 0.87074 0.99724 0.96678 1.22232 1.02402 0.92057 1.01206 1.17861 0.91185 0.94306 0.93893 1.20142 0.99047 0.91942 1.19218 1.18199 0.91127 0.87830 0.95797 1.41146 1.06552 1.07343 1.60476 1.20127 0.82490 0.99974 1.42022 0.86917 1.26243 1.05448 0.94385 0.96155 1.69747 1.38981 1.02718 1.43914 0.84887 0.75988 0.77752 0.79360 1.18766 1.20807 1.18869 1.20656 0.91699 0.99942 1.05408 1.20594 0.99445 0.91191 0.97407 1.18325 0.93728 0.94222 1.09469 0.79305 0.82374 0.85990 0.77002 0.91127 0.84943 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -14.00 18.54 19.00 0.35 -13.65 15 2 C 0.29 9.22 14.27 88.33 1.26 10.48 15 3 C 0.22 7.00 6.65 41.09 0.27 7.27 15 4 N -0.50 -15.08 10.22 -189.07 -1.93 -17.02 15 5 C 0.09 2.15 11.06 84.25 0.93 3.08 15 6 C -0.16 -4.22 9.88 22.48 0.22 -3.99 15 7 C 0.03 1.13 5.74 -21.30 -0.12 1.00 15 8 C -0.28 -10.40 9.09 22.69 0.21 -10.19 15 9 C 0.19 7.68 6.61 38.44 0.25 7.94 15 10 N -0.56 -24.74 5.41 -184.29 -1.00 -25.74 15 11 C -0.32 -14.79 9.54 84.06 0.80 -13.99 15 12 H 0.11 5.00 5.67 -2.91 -0.02 4.98 15 13 C -0.02 -0.99 5.50 84.88 0.47 -0.52 15 14 N -0.92 -45.74 13.06 21.65 0.28 -45.46 15 15 Si 1.00 37.10 29.55 68.60 2.03 39.13 15 16 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 17 H -0.28 -10.52 7.11 99.48 0.71 -9.81 15 18 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 19 C -0.16 -5.36 9.79 22.22 0.22 -5.14 15 20 C -0.07 -2.07 9.37 22.22 0.21 -1.87 15 21 C -0.15 -4.96 5.77 -21.10 -0.12 -5.08 15 22 H 0.19 3.13 8.06 -2.91 -0.02 3.11 15 23 H 0.16 3.38 8.06 -2.91 -0.02 3.35 15 24 H 0.12 4.63 5.94 -2.91 -0.02 4.61 15 25 H 0.40 17.96 7.91 -92.71 -0.73 17.23 15 26 H 0.28 13.24 8.31 -92.71 -0.77 12.47 15 27 H 0.13 4.05 8.06 -2.91 -0.02 4.02 15 28 H 0.13 3.74 7.22 -2.91 -0.02 3.72 15 Total: -1.00 -52.39 260.61 4.82 -47.57 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.49 Total: 26.17 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 4.60 Total: -11.01 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -2.30 Total: -101.86 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Total: -52.39 4.82 -47.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187540.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.014 kcal (2) G-P(sol) polarization free energy of solvation -52.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds