Wall clock time and date at job start Sun Mar 29 2020 22:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35759 * 119.62596 * 2 1 4 4 C 1.35349 * 120.70256 * 180.24398 * 3 2 1 5 5 C 1.40203 * 119.94716 * 359.50341 * 4 3 2 6 6 C 1.50694 * 120.36716 * 180.27945 * 5 4 3 7 7 S 1.81407 * 109.46981 * 285.00231 * 6 5 4 8 8 C 1.81403 * 102.99883 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47151 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00179 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00092 * 180.02562 * 9 8 7 12 12 N 1.31518 * 120.00316 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00228 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47103 * 89.99863 * 13 11 9 15 15 H 1.48493 * 109.47161 * 209.99904 * 13 11 9 16 16 H 1.48498 * 109.46990 * 330.00377 * 13 11 9 17 17 C 1.36401 * 119.26492 * 0.25974 * 5 4 3 18 18 C 1.34661 * 119.62372 * 179.77083 * 2 1 3 19 19 O 1.22063 * 119.98308 * 0.02562 * 18 2 1 20 20 H 1.09003 * 109.46970 * 270.23021 * 1 2 3 21 21 H 1.08994 * 109.47191 * 30.22797 * 1 2 3 22 22 H 1.09000 * 109.47201 * 150.23197 * 1 2 3 23 23 H 1.07997 * 119.64981 * 0.02562 * 3 2 1 24 24 H 1.08002 * 120.02977 * 179.78962 * 4 3 2 25 25 H 1.08995 * 109.47458 * 45.00059 * 6 5 4 26 26 H 1.08996 * 109.47382 * 165.00439 * 6 5 4 27 27 H 1.08998 * 109.47430 * 300.00215 * 8 7 6 28 28 H 1.09006 * 109.46827 * 59.99994 * 8 7 6 29 29 H 0.97000 * 120.00478 * 179.97438 * 12 11 9 30 30 H 1.07999 * 120.34709 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1361 1.1801 0.0000 4 6 3.4894 1.2055 -0.0050 5 6 4.2120 0.0041 0.0004 6 6 5.7188 0.0214 0.0013 7 16 6.3194 0.4644 -1.6522 8 6 8.1222 0.4337 -1.4532 9 6 8.7782 0.7862 -2.7633 10 1 8.1714 1.0070 -3.6289 11 6 10.1532 0.8268 -2.8569 12 7 10.8923 0.5584 -1.8026 13 14 10.9664 1.2645 -4.4807 14 1 11.1662 2.7342 -4.5540 15 1 12.2812 0.5808 -4.5759 16 1 10.0982 0.8264 -5.6030 17 6 3.5360 -1.1806 0.0051 18 6 2.1306 -1.1706 0.0047 19 8 1.5131 -2.2235 0.0084 20 1 -0.3633 0.0041 1.0277 21 1 -0.3633 0.8879 -0.5173 22 1 -0.3633 -0.8920 -0.5102 23 1 1.5844 2.1085 0.0004 24 1 4.0122 2.1506 -0.0083 25 1 6.0734 0.7551 0.7252 26 1 6.0934 -0.9659 0.2714 27 1 8.4163 1.1573 -0.6930 28 1 8.4370 -0.5638 -1.1465 29 1 11.8597 0.5866 -1.8685 30 1 4.0750 -2.1164 0.0089 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166313955.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:55 Heat of formation + Delta-G solvation = -13.890792 kcal Electronic energy + Delta-G solvation = -13922.900507 eV Core-core repulsion = 11423.589492 eV Total energy + Delta-G solvation = -2499.311015 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.25031 -36.99084 -35.35914 -33.17709 -30.33944 -29.28808 -28.55689 -26.30523 -23.72059 -23.10649 -21.45201 -17.50694 -17.38586 -16.59656 -16.08595 -15.99967 -15.29137 -14.56838 -14.32306 -14.12411 -13.40141 -13.28555 -12.95664 -12.69400 -12.50508 -12.12852 -12.07648 -11.67247 -11.60277 -10.90185 -10.80618 -10.36903 -9.97357 -9.68947 -9.40192 -8.91538 -8.64205 -7.95517 -6.75928 -6.22298 -4.26858 0.76928 1.82131 2.61614 2.66772 3.24777 3.30699 3.36029 3.74506 3.78405 4.33437 4.45708 4.54881 4.73640 5.01013 5.03559 5.15042 5.22992 5.31787 5.41912 5.61108 5.83207 5.94975 6.09166 6.46144 6.53785 7.04058 7.04732 7.06896 7.72035 7.97203 8.04482 8.74981 9.36561 10.88941 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.058118 B = 0.004309 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.665236 B = 6496.770274 C = 6574.637366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.504 5.504 3 C 0.120 3.880 4 C -0.205 4.205 5 C 0.046 3.954 6 C -0.069 4.069 7 S -0.285 6.285 8 C 0.088 3.912 9 C -0.513 4.513 10 H 0.067 0.933 11 C 0.066 3.934 12 N -0.893 5.893 13 Si 0.907 3.093 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.271 1.271 17 C -0.237 4.237 18 C 0.516 3.484 19 O -0.562 6.562 20 H 0.072 0.928 21 H 0.083 0.917 22 H 0.092 0.908 23 H 0.162 0.838 24 H 0.150 0.850 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.266 0.734 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.518 3.274 5.593 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.216 5.216 3 C -0.006 4.006 4 C -0.229 4.229 5 C 0.041 3.959 6 C -0.216 4.216 7 S -0.056 6.056 8 C -0.059 4.059 9 C -0.553 4.553 10 H 0.086 0.914 11 C -0.138 4.138 12 N -0.531 5.531 13 Si 0.734 3.266 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.195 1.195 17 C -0.262 4.262 18 C 0.319 3.681 19 O -0.446 6.446 20 H 0.091 0.909 21 H 0.101 0.899 22 H 0.110 0.890 23 H 0.179 0.821 24 H 0.167 0.833 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.332 2.821 4.754 18.192 hybrid contribution 1.386 0.083 0.313 1.424 sum -15.946 2.903 5.066 16.981 Atomic orbital electron populations 1.22094 0.77635 1.04781 1.03527 1.45356 1.08995 1.06952 1.60272 1.21832 0.93577 0.89218 0.95980 1.20641 0.92251 0.99451 1.10576 1.19723 0.94627 0.92978 0.88556 1.22346 0.93013 1.05464 1.00772 1.86871 1.14025 1.91922 1.12822 1.21114 0.83136 1.00347 1.01263 1.20657 0.91130 1.48430 0.95035 0.91442 1.24960 0.96763 0.94788 0.97288 1.69950 1.05698 1.48222 1.29208 0.86343 0.78646 0.78611 0.83023 1.20326 1.20949 1.19517 1.21990 0.92335 0.99554 1.12275 1.17052 0.89107 0.82635 0.79286 1.90928 1.69927 1.29646 1.54060 0.90912 0.89865 0.88957 0.82061 0.83254 0.88951 0.89377 0.94464 0.94458 0.92448 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.48 10.36 59.85 0.62 1.10 16 2 N -0.50 -5.79 2.99 -127.20 -0.38 -6.17 16 3 C 0.12 1.13 10.28 -16.84 -0.17 0.96 16 4 C -0.21 -2.41 9.71 -39.87 -0.39 -2.80 16 5 C 0.05 0.67 5.16 -104.55 -0.54 0.13 16 6 C -0.07 -1.11 6.13 36.00 0.22 -0.89 16 7 S -0.28 -5.99 21.62 -107.50 -2.32 -8.31 16 8 C 0.09 2.24 5.70 36.00 0.21 2.44 16 9 C -0.51 -14.27 9.13 -34.44 -0.31 -14.58 16 10 H 0.07 1.88 7.71 -52.49 -0.40 1.47 16 11 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 12 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 13 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 C -0.24 -3.62 9.62 -39.38 -0.38 -4.00 16 18 C 0.52 7.99 7.41 -15.45 -0.11 7.88 16 19 O -0.56 -10.39 16.64 4.86 0.08 -10.31 16 20 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.08 0.39 8.02 -51.93 -0.42 -0.03 16 22 H 0.09 0.86 7.39 -51.93 -0.38 0.48 16 23 H 0.16 0.82 8.04 -52.49 -0.42 0.40 16 24 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 25 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.09 1.39 7.96 -51.93 -0.41 0.98 16 27 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.99 8.14 -51.92 -0.42 0.56 16 29 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.15 2.25 8.01 -52.49 -0.42 1.83 16 LS Contribution 280.38 15.07 4.23 4.23 Total: -1.00 -32.72 280.38 -7.35 -40.06 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -3.71 Total: -2.66 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -0.96 Total: -8.04 kcal Atomic # 7 Polarization: -31.44 SS G_CDS: 0.36 Total: -31.08 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -2.32 Total: -8.31 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.72 -7.35 -40.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166313955.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.174 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds