Wall clock time and date at job start Sun Mar 29 2020 22:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35759 * 119.62596 * 2 1 4 4 C 1.35349 * 120.70256 * 180.24398 * 3 2 1 5 5 C 1.40203 * 119.94716 * 359.50341 * 4 3 2 6 6 C 1.50694 * 120.36716 * 180.27945 * 5 4 3 7 7 S 1.81407 * 109.46981 * 285.00231 * 6 5 4 8 8 C 1.81403 * 102.99883 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47151 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00179 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00092 * 180.02562 * 9 8 7 12 12 N 1.31518 * 120.00316 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00228 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47103 * 89.99863 * 13 11 9 15 15 H 1.48493 * 109.47161 * 209.99904 * 13 11 9 16 16 H 1.48498 * 109.46990 * 330.00377 * 13 11 9 17 17 C 1.36401 * 119.26492 * 0.25974 * 5 4 3 18 18 C 1.34661 * 119.62372 * 179.77083 * 2 1 3 19 19 O 1.22063 * 119.98308 * 0.02562 * 18 2 1 20 20 H 1.09003 * 109.46970 * 270.23021 * 1 2 3 21 21 H 1.08994 * 109.47191 * 30.22797 * 1 2 3 22 22 H 1.09000 * 109.47201 * 150.23197 * 1 2 3 23 23 H 1.07997 * 119.64981 * 0.02562 * 3 2 1 24 24 H 1.08002 * 120.02977 * 179.78962 * 4 3 2 25 25 H 1.08995 * 109.47458 * 45.00059 * 6 5 4 26 26 H 1.08996 * 109.47382 * 165.00439 * 6 5 4 27 27 H 1.08998 * 109.47430 * 300.00215 * 8 7 6 28 28 H 1.09006 * 109.46827 * 59.99994 * 8 7 6 29 29 H 0.97000 * 120.00478 * 179.97438 * 12 11 9 30 30 H 1.07999 * 120.34709 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1361 1.1801 0.0000 4 6 3.4894 1.2055 -0.0050 5 6 4.2120 0.0041 0.0004 6 6 5.7188 0.0214 0.0013 7 16 6.3194 0.4644 -1.6522 8 6 8.1222 0.4337 -1.4532 9 6 8.7782 0.7862 -2.7633 10 1 8.1714 1.0070 -3.6289 11 6 10.1532 0.8268 -2.8569 12 7 10.8923 0.5584 -1.8026 13 14 10.9664 1.2645 -4.4807 14 1 11.1662 2.7342 -4.5540 15 1 12.2812 0.5808 -4.5759 16 1 10.0982 0.8264 -5.6030 17 6 3.5360 -1.1806 0.0051 18 6 2.1306 -1.1706 0.0047 19 8 1.5131 -2.2235 0.0084 20 1 -0.3633 0.0041 1.0277 21 1 -0.3633 0.8879 -0.5173 22 1 -0.3633 -0.8920 -0.5102 23 1 1.5844 2.1085 0.0004 24 1 4.0122 2.1506 -0.0083 25 1 6.0734 0.7551 0.7252 26 1 6.0934 -0.9659 0.2714 27 1 8.4163 1.1573 -0.6930 28 1 8.4370 -0.5638 -1.1465 29 1 11.8597 0.5866 -1.8685 30 1 4.0750 -2.1164 0.0089 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166313955.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:55 Heat of formation + Delta-G solvation = -34.147110 kcal Electronic energy + Delta-G solvation = -13923.778887 eV Core-core repulsion = 11423.589492 eV Total energy + Delta-G solvation = -2500.189395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.27895 -38.13918 -36.39322 -35.28663 -31.31478 -30.69008 -30.35861 -27.24760 -25.22272 -24.62321 -22.59621 -18.71967 -18.49250 -18.27804 -17.33746 -17.07712 -16.85729 -16.33738 -15.38362 -15.23037 -14.83761 -14.61998 -14.39325 -14.16597 -13.89571 -13.56761 -13.18208 -12.82590 -12.76715 -12.65050 -12.50776 -12.10886 -11.64575 -11.13607 -10.88201 -10.73986 -10.53155 -8.99091 -8.48195 -8.33061 -6.46292 -0.32565 0.74729 1.19195 1.41740 1.42515 1.55067 1.73533 1.97032 2.37484 2.67998 3.01966 3.44492 3.72063 3.82965 4.00998 4.27165 4.41027 4.46859 4.56089 4.58547 4.80485 4.90941 4.95131 4.95667 5.10258 5.44308 5.57126 5.58639 5.88599 6.04673 6.61201 6.94789 7.22041 8.78867 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.058118 B = 0.004309 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.665236 B = 6496.770274 C = 6574.637366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.498 5.498 3 C 0.155 3.845 4 C -0.230 4.230 5 C 0.052 3.948 6 C -0.058 4.058 7 S -0.287 6.287 8 C 0.088 3.912 9 C -0.537 4.537 10 H 0.062 0.938 11 C 0.016 3.984 12 N -0.925 5.925 13 Si 0.976 3.024 14 H -0.267 1.267 15 H -0.277 1.277 16 H -0.267 1.267 17 C -0.268 4.268 18 C 0.504 3.496 19 O -0.607 6.607 20 H 0.090 0.910 21 H 0.128 0.872 22 H 0.072 0.928 23 H 0.223 0.777 24 H 0.167 0.833 25 H 0.109 0.891 26 H 0.085 0.915 27 H 0.022 0.978 28 H 0.013 0.987 29 H 0.270 0.730 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.156 5.537 5.220 19.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.207 5.207 3 C 0.028 3.972 4 C -0.253 4.253 5 C 0.046 3.954 6 C -0.205 4.205 7 S -0.058 6.058 8 C -0.059 4.059 9 C -0.576 4.576 10 H 0.081 0.919 11 C -0.185 4.185 12 N -0.564 5.564 13 Si 0.799 3.201 14 H -0.192 1.192 15 H -0.202 1.202 16 H -0.191 1.191 17 C -0.292 4.292 18 C 0.308 3.692 19 O -0.495 6.495 20 H 0.108 0.892 21 H 0.146 0.854 22 H 0.091 0.909 23 H 0.239 0.761 24 H 0.185 0.815 25 H 0.127 0.873 26 H 0.104 0.896 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.079 0.921 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.988 5.110 4.383 20.146 hybrid contribution 1.757 -0.569 0.520 1.918 sum -17.231 4.541 4.903 18.482 Atomic orbital electron populations 1.22436 0.75034 1.06046 1.05122 1.45526 1.10772 1.06492 1.57885 1.22685 0.93141 0.90118 0.91258 1.20887 0.93466 0.98807 1.12114 1.19682 0.93288 0.94005 0.88430 1.22384 0.94493 1.05787 0.97811 1.86628 1.10116 1.92081 1.16964 1.20809 0.86816 0.98294 1.00005 1.20981 0.91923 1.48922 0.95729 0.91938 1.25892 0.97344 0.94305 1.00973 1.70053 1.06164 1.48838 1.31337 0.85284 0.77593 0.78803 0.78427 1.19165 1.20207 1.19091 1.21896 0.92891 0.99535 1.14911 1.17063 0.89099 0.83405 0.79596 1.90892 1.70596 1.31402 1.56655 0.89194 0.85392 0.90910 0.76075 0.81544 0.87256 0.89589 0.96016 0.96826 0.92060 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.65 10.36 127.77 1.32 1.98 16 2 N -0.50 -9.97 2.99 -674.48 -2.01 -11.98 16 3 C 0.15 2.19 10.28 83.42 0.86 3.05 16 4 C -0.23 -4.67 9.71 22.08 0.21 -4.46 16 5 C 0.05 1.44 5.16 -19.82 -0.10 1.34 16 6 C -0.06 -1.85 6.13 71.23 0.44 -1.41 16 7 S -0.29 -12.10 21.62 -56.49 -1.22 -13.32 16 8 C 0.09 4.61 5.70 71.23 0.41 5.02 16 9 C -0.54 -30.35 9.13 25.60 0.23 -30.12 16 10 H 0.06 3.52 7.71 -2.91 -0.02 3.49 16 11 C 0.02 0.88 5.46 84.65 0.46 1.34 16 12 N -0.93 -53.93 13.29 21.45 0.28 -53.65 16 13 Si 0.98 43.23 29.54 68.60 2.03 45.26 16 14 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 16 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 17 C -0.27 -8.33 9.62 22.40 0.22 -8.12 16 18 C 0.50 15.47 7.41 84.82 0.63 16.10 16 19 O -0.61 -23.10 16.64 -5.52 -0.09 -23.19 16 20 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 21 H 0.13 0.45 8.02 -2.39 -0.02 0.43 16 22 H 0.07 1.24 7.39 -2.39 -0.02 1.22 16 23 H 0.22 0.54 8.04 -2.91 -0.02 0.51 16 24 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 25 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 26 H 0.09 2.80 7.96 -2.39 -0.02 2.78 16 27 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.13 4.37 8.01 -2.91 -0.02 4.35 16 Total: -1.00 -74.16 280.38 4.78 -69.37 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: 1.12 Total: 2.80 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 4.68 Total: -15.28 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -1.73 Total: -65.63 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.09 Total: -23.19 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -12.10 SS G_CDS: -1.22 Total: -13.32 kcal Total: -74.16 4.78 -69.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166313955.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.224 kcal (2) G-P(sol) polarization free energy of solvation -74.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds