Wall clock time and date at job start Sun Mar 29 2020 22:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36355 * 120.07759 * 2 1 4 4 C 1.39549 * 120.15875 * 180.25301 * 3 2 1 5 5 N 1.38856 * 119.84284 * 179.75888 * 4 3 2 6 6 C 1.46500 * 120.00068 * 179.72580 * 5 4 3 7 7 C 1.52996 * 109.47365 * 180.02562 * 6 5 4 8 8 Cl 1.80298 * 109.47429 * 179.97438 * 7 6 5 9 9 C 1.39592 * 120.31377 * 359.48298 * 4 3 2 10 10 C 1.36318 * 120.15852 * 0.23177 * 9 4 3 11 11 C 1.40869 * 120.08290 * 179.71608 * 2 1 3 12 12 C 1.41145 * 120.15341 * 0.02562 * 11 2 1 13 13 H 1.08004 * 119.99693 * 333.64465 * 12 11 2 14 14 C 1.39858 * 119.99789 * 153.64957 * 12 11 2 15 15 N 1.30909 * 119.99920 * 343.79160 * 14 12 11 16 16 Si 1.86801 * 120.00068 * 163.79606 * 14 12 11 17 17 H 1.48494 * 109.46949 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47269 * 119.99731 * 16 14 12 19 19 H 1.48505 * 109.46753 * 239.99601 * 16 14 12 20 20 H 1.08997 * 109.47755 * 270.28005 * 1 2 3 21 21 H 1.09000 * 109.47549 * 30.28638 * 1 2 3 22 22 H 1.09007 * 109.47219 * 150.28184 * 1 2 3 23 23 H 1.07999 * 119.92452 * 0.02562 * 3 2 1 24 24 H 0.97000 * 120.00089 * 359.72687 * 5 4 3 25 25 H 1.09000 * 109.47307 * 59.99959 * 6 5 4 26 26 H 1.08998 * 109.47089 * 299.99991 * 6 5 4 27 27 H 1.09007 * 109.46821 * 300.00165 * 7 6 5 28 28 H 1.09000 * 109.47075 * 59.99653 * 7 6 5 29 29 H 1.07998 * 119.91822 * 180.25446 * 9 4 3 30 30 H 1.08002 * 120.08119 * 180.02562 * 10 9 4 31 31 H 0.96999 * 119.99939 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1799 0.0000 4 6 3.5859 1.1819 -0.0053 5 7 4.2751 2.3873 -0.0104 6 6 5.7401 2.3935 -0.0099 7 6 6.2441 3.8380 -0.0154 8 17 8.0471 3.8456 -0.0141 9 6 4.2922 -0.0221 0.0002 10 6 3.6221 -1.2092 0.0061 11 6 2.2131 -1.2189 0.0060 12 6 1.5125 -2.4442 0.0116 13 1 0.5167 -2.4949 0.4267 14 6 2.1077 -3.5925 -0.5204 15 7 3.1560 -3.4864 -1.2973 16 14 1.4069 -5.2777 -0.1225 17 1 0.2302 -5.1261 0.7706 18 1 0.9915 -5.9505 -1.3794 19 1 2.4423 -6.0962 0.5583 20 1 -0.3634 0.0050 1.0276 21 1 -0.3634 0.8874 -0.5183 22 1 -0.3634 -0.8925 -0.5095 23 1 1.6504 2.1153 0.0004 24 1 3.7866 3.2254 -0.0142 25 1 6.1059 1.8773 -0.8975 26 1 6.1053 1.8851 0.8824 27 1 5.8789 4.3469 -0.9076 28 1 5.8783 4.3539 0.8724 29 1 5.3721 -0.0131 0.0002 30 1 4.1698 -2.1400 0.0107 31 1 3.5687 -4.2828 -1.6665 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167815422.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:12 Heat of formation + Delta-G solvation = -1.578727 kcal Electronic energy + Delta-G solvation = -14353.998904 eV Core-core repulsion = 11853.178074 eV Total energy + Delta-G solvation = -2500.820830 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.22015 -36.40415 -35.33747 -33.22920 -31.31036 -30.17873 -27.87781 -26.09808 -24.04143 -22.67732 -20.89461 -19.15070 -17.11549 -16.07619 -15.37614 -15.34578 -14.92992 -13.90632 -13.53735 -13.08809 -12.82446 -12.62285 -12.38289 -12.34500 -11.65725 -11.55235 -11.12143 -11.05997 -10.96114 -10.79371 -10.55939 -10.50082 -10.37966 -9.56865 -9.27642 -9.21868 -8.52346 -7.35383 -6.64625 -6.41491 -4.05510 2.06900 2.88254 3.04777 3.15165 3.20168 3.32765 4.04817 4.34166 4.73547 4.75647 4.80610 5.19802 5.72338 5.91465 5.95980 6.21888 6.26280 6.43964 6.70397 6.71793 6.87081 6.99932 7.21311 7.34162 7.57251 7.72480 7.79522 8.13370 8.26642 8.44365 8.62773 8.75976 9.05305 9.13507 10.37168 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.036304 B = 0.005124 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.072083 B = 5463.657671 C = 6146.077283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.159 4.159 3 C -0.154 4.154 4 C 0.092 3.908 5 N -0.762 5.762 6 C 0.130 3.870 7 C -0.039 4.039 8 Cl -0.180 7.180 9 C -0.166 4.166 10 C -0.121 4.121 11 C 0.079 3.921 12 C -0.462 4.462 13 H 0.076 0.924 14 C 0.074 3.926 15 N -0.808 5.808 16 Si 0.902 3.098 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.275 1.275 20 H 0.041 0.959 21 H 0.036 0.964 22 H 0.062 0.938 23 H 0.086 0.914 24 H 0.384 0.616 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.536 9.079 1.732 9.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.162 4.162 3 C -0.176 4.176 4 C -0.005 4.005 5 N -0.400 5.400 6 C 0.004 3.996 7 C -0.103 4.103 8 Cl -0.153 7.153 9 C -0.187 4.187 10 C -0.141 4.141 11 C 0.077 3.923 12 C -0.493 4.493 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.435 5.435 16 Si 0.727 3.273 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.200 1.200 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.081 0.919 23 H 0.104 0.896 24 H 0.217 0.783 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.136 0.864 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.001 8.830 1.590 9.824 hybrid contribution -0.243 -0.462 0.032 0.523 sum 3.758 8.369 1.623 9.316 Atomic orbital electron populations 1.20413 0.93609 1.00545 0.99616 1.19311 0.94208 0.92717 1.09923 1.19643 0.91372 0.96487 1.10129 1.17269 0.90571 0.84753 1.07880 1.43708 1.02617 1.05632 1.88008 1.21220 0.83127 0.93235 1.02014 1.24466 0.80239 1.00306 1.05251 1.98714 1.18068 1.99130 1.99424 1.20099 0.97161 0.92011 1.09467 1.20918 0.94646 0.96062 1.02478 1.17375 0.91615 0.91663 0.91694 1.19406 1.02037 0.92508 1.35375 0.90621 1.25809 0.94408 1.00947 0.92945 1.69858 1.19265 1.30983 1.23438 0.86373 0.79902 0.82011 0.79037 1.18609 1.20276 1.19993 0.94009 0.94504 0.91895 0.89552 0.78343 0.92250 0.92317 0.88685 0.88705 0.89389 0.86385 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.76 9.39 36.01 0.34 -1.43 16 2 C -0.16 -3.83 5.90 -104.30 -0.62 -4.45 16 3 C -0.15 -3.40 9.46 -39.77 -0.38 -3.78 16 4 C 0.09 1.96 6.67 -83.69 -0.56 1.41 16 5 N -0.76 -12.66 5.70 -58.50 -0.33 -13.00 16 6 C 0.13 1.85 5.01 -4.04 -0.02 1.83 16 7 C -0.04 -0.41 6.77 37.16 0.25 -0.16 16 8 Cl -0.18 -2.08 29.15 -51.86 -1.51 -3.59 16 9 C -0.17 -3.86 9.23 -39.77 -0.37 -4.23 16 10 C -0.12 -3.16 8.62 -39.27 -0.34 -3.49 16 11 C 0.08 2.11 5.56 -106.79 -0.59 1.51 16 12 C -0.46 -12.26 8.09 -37.87 -0.31 -12.57 16 13 H 0.08 1.94 6.89 -52.48 -0.36 1.58 16 14 C 0.07 1.89 5.15 -17.34 -0.09 1.80 16 15 N -0.81 -21.33 10.97 55.54 0.61 -20.72 16 16 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 17 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 22 H 0.06 1.34 6.78 -51.93 -0.35 0.99 16 23 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 24 H 0.38 5.46 8.47 -40.82 -0.35 5.11 16 25 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 26 H 0.06 0.89 7.93 -51.93 -0.41 0.47 16 27 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.89 6.68 -52.49 -0.35 1.54 16 30 H 0.12 3.20 6.23 -52.49 -0.33 2.87 16 31 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 276.35 15.07 4.16 4.16 Total: -1.00 -27.69 276.35 -8.58 -36.27 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -3.80 Total: 6.40 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -2.68 Total: -23.56 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.28 Total: -33.71 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -1.51 Total: -3.59 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.69 -8.58 -36.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167815422.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.689 kcal (2) G-P(sol) polarization free energy of solvation -27.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds