Wall clock time and date at job start Sun Mar 29 2020 22:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36355 * 120.07759 * 2 1 4 4 C 1.39549 * 120.15875 * 180.25301 * 3 2 1 5 5 N 1.38856 * 119.84284 * 179.75888 * 4 3 2 6 6 C 1.46500 * 120.00068 * 179.72580 * 5 4 3 7 7 C 1.52996 * 109.47365 * 180.02562 * 6 5 4 8 8 Cl 1.80298 * 109.47429 * 179.97438 * 7 6 5 9 9 C 1.39592 * 120.31377 * 359.48298 * 4 3 2 10 10 C 1.36318 * 120.15852 * 0.23177 * 9 4 3 11 11 C 1.40869 * 120.08290 * 179.71608 * 2 1 3 12 12 C 1.41145 * 120.15341 * 0.02562 * 11 2 1 13 13 H 1.08004 * 119.99693 * 333.64465 * 12 11 2 14 14 C 1.39858 * 119.99789 * 153.64957 * 12 11 2 15 15 N 1.30909 * 119.99920 * 343.79160 * 14 12 11 16 16 Si 1.86801 * 120.00068 * 163.79606 * 14 12 11 17 17 H 1.48494 * 109.46949 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47269 * 119.99731 * 16 14 12 19 19 H 1.48505 * 109.46753 * 239.99601 * 16 14 12 20 20 H 1.08997 * 109.47755 * 270.28005 * 1 2 3 21 21 H 1.09000 * 109.47549 * 30.28638 * 1 2 3 22 22 H 1.09007 * 109.47219 * 150.28184 * 1 2 3 23 23 H 1.07999 * 119.92452 * 0.02562 * 3 2 1 24 24 H 0.97000 * 120.00089 * 359.72687 * 5 4 3 25 25 H 1.09000 * 109.47307 * 59.99959 * 6 5 4 26 26 H 1.08998 * 109.47089 * 299.99991 * 6 5 4 27 27 H 1.09007 * 109.46821 * 300.00165 * 7 6 5 28 28 H 1.09000 * 109.47075 * 59.99653 * 7 6 5 29 29 H 1.07998 * 119.91822 * 180.25446 * 9 4 3 30 30 H 1.08002 * 120.08119 * 180.02562 * 10 9 4 31 31 H 0.96999 * 119.99939 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1904 1.1799 0.0000 4 6 3.5859 1.1819 -0.0053 5 7 4.2751 2.3873 -0.0104 6 6 5.7401 2.3935 -0.0099 7 6 6.2441 3.8380 -0.0154 8 17 8.0471 3.8456 -0.0141 9 6 4.2922 -0.0221 0.0002 10 6 3.6221 -1.2092 0.0061 11 6 2.2131 -1.2189 0.0060 12 6 1.5125 -2.4442 0.0116 13 1 0.5167 -2.4949 0.4267 14 6 2.1077 -3.5925 -0.5204 15 7 3.1560 -3.4864 -1.2973 16 14 1.4069 -5.2777 -0.1225 17 1 0.2302 -5.1261 0.7706 18 1 0.9915 -5.9505 -1.3794 19 1 2.4423 -6.0962 0.5583 20 1 -0.3634 0.0050 1.0276 21 1 -0.3634 0.8874 -0.5183 22 1 -0.3634 -0.8925 -0.5095 23 1 1.6504 2.1153 0.0004 24 1 3.7866 3.2254 -0.0142 25 1 6.1059 1.8773 -0.8975 26 1 6.1053 1.8851 0.8824 27 1 5.8789 4.3469 -0.9076 28 1 5.8783 4.3539 0.8724 29 1 5.3721 -0.0131 0.0002 30 1 4.1698 -2.1400 0.0107 31 1 3.5687 -4.2828 -1.6665 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167815422.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:11 Heat of formation + Delta-G solvation = -16.649840 kcal Electronic energy + Delta-G solvation = -14354.652436 eV Core-core repulsion = 11853.178074 eV Total energy + Delta-G solvation = -2501.474363 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.95111 -37.55753 -36.65699 -35.00338 -32.96233 -31.78052 -29.48093 -27.76606 -25.84291 -23.90333 -22.69957 -20.85475 -19.00274 -17.68575 -16.87397 -16.60309 -16.36963 -15.60824 -15.06225 -14.57254 -14.36384 -14.15966 -13.77090 -13.65755 -13.37018 -13.16200 -12.83570 -12.74929 -12.69130 -12.38488 -12.14727 -11.53669 -11.38826 -11.36479 -11.11039 -11.03117 -10.23516 -9.18633 -8.51020 -8.15628 -5.97687 1.10378 1.16272 1.19830 1.41476 1.55100 1.58679 2.28773 2.87242 3.01099 3.71439 3.82845 3.94023 4.32358 4.47895 4.50165 4.78361 4.78695 4.83667 4.97983 5.08138 5.14863 5.32411 5.35418 5.52115 5.73734 5.92551 5.97245 6.25052 6.43739 6.66048 6.87461 7.13237 7.15926 7.31566 8.52260 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.036304 B = 0.005124 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.072083 B = 5463.657671 C = 6146.077283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.167 4.167 3 C -0.164 4.164 4 C 0.111 3.889 5 N -0.749 5.749 6 C 0.127 3.873 7 C -0.027 4.027 8 Cl -0.187 7.187 9 C -0.182 4.182 10 C -0.144 4.144 11 C 0.037 3.963 12 C -0.493 4.493 13 H 0.074 0.926 14 C 0.030 3.970 15 N -0.846 5.846 16 Si 0.972 3.028 17 H -0.258 1.258 18 H -0.271 1.271 19 H -0.271 1.271 20 H 0.055 0.945 21 H 0.063 0.937 22 H 0.048 0.952 23 H 0.120 0.880 24 H 0.401 0.599 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 10.918 2.039 11.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.169 4.169 3 C -0.186 4.186 4 C 0.012 3.988 5 N -0.387 5.387 6 C 0.002 3.998 7 C -0.090 4.090 8 Cl -0.160 7.160 9 C -0.204 4.204 10 C -0.164 4.164 11 C 0.035 3.965 12 C -0.524 4.524 13 H 0.092 0.908 14 C -0.181 4.181 15 N -0.475 5.475 16 Si 0.794 3.206 17 H -0.182 1.182 18 H -0.196 1.196 19 H -0.196 1.196 20 H 0.074 0.926 21 H 0.082 0.918 22 H 0.067 0.933 23 H 0.138 0.862 24 H 0.236 0.764 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.543 10.723 1.900 11.452 hybrid contribution -0.032 -0.829 -0.056 0.832 sum 3.511 9.894 1.844 10.659 Atomic orbital electron populations 1.20406 0.91516 1.01173 1.00685 1.19796 0.96099 0.92624 1.08375 1.19985 0.91769 0.97213 1.09660 1.17388 0.90881 0.85811 1.04674 1.43676 1.03719 1.04724 1.86560 1.21279 0.81585 0.95879 1.01052 1.24407 0.79541 0.97735 1.07327 1.98724 1.18801 1.99048 1.99467 1.20219 0.97865 0.92138 1.10204 1.20845 0.94953 0.96220 1.04409 1.17721 0.92096 0.92983 0.93735 1.19606 1.02395 0.93663 1.36779 0.90806 1.26600 0.94720 1.04432 0.92382 1.69936 1.20808 1.32063 1.24702 0.85304 0.79163 0.77187 0.78898 1.18155 1.19576 1.19567 0.92618 0.91777 0.93278 0.86200 0.76366 0.93473 0.93115 0.86784 0.86595 0.88304 0.88758 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.25 9.39 71.24 0.67 -2.58 16 2 C -0.17 -7.93 5.90 -19.66 -0.12 -8.05 16 3 C -0.16 -6.89 9.46 22.15 0.21 -6.68 16 4 C 0.11 4.59 6.67 38.67 0.26 4.85 16 5 N -0.75 -22.70 5.70 -338.99 -1.93 -24.63 16 6 C 0.13 3.34 5.01 86.38 0.43 3.77 16 7 C -0.03 -0.48 6.77 71.98 0.49 0.00 16 8 Cl -0.19 -3.92 29.15 -2.72 -0.08 -4.00 16 9 C -0.18 -8.56 9.23 22.15 0.20 -8.36 16 10 C -0.14 -7.79 8.62 22.47 0.19 -7.60 16 11 C 0.04 2.04 5.56 -21.27 -0.12 1.92 16 12 C -0.49 -27.01 8.09 23.38 0.19 -26.82 16 13 H 0.07 3.89 6.89 -2.91 -0.02 3.87 16 14 C 0.03 1.57 5.15 85.22 0.44 2.00 16 15 N -0.85 -46.50 10.97 21.81 0.24 -46.26 16 16 Si 0.97 40.07 29.59 68.60 2.03 42.10 16 17 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 18 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 20 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 21 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 22 H 0.05 2.08 6.78 -2.38 -0.02 2.06 16 23 H 0.12 4.18 8.06 -2.91 -0.02 4.15 16 24 H 0.40 9.72 8.47 -92.71 -0.79 8.93 16 25 H 0.05 1.38 7.93 -2.39 -0.02 1.36 16 26 H 0.05 1.44 7.93 -2.39 -0.02 1.42 16 27 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.10 4.29 6.68 -2.91 -0.02 4.27 16 30 H 0.09 5.43 6.23 -2.91 -0.02 5.42 16 31 H 0.28 14.05 8.30 -92.71 -0.77 13.28 16 Total: -1.00 -61.30 276.35 3.46 -57.84 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.35 Total: 22.48 kcal Atomic # 6 Polarization: -50.38 SS G_CDS: 2.85 Total: -47.53 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -1.69 Total: -70.89 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Atomic # 17 Polarization: -3.92 SS G_CDS: -0.08 Total: -4.00 kcal Total: -61.30 3.46 -57.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167815422.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.194 kcal (2) G-P(sol) polarization free energy of solvation -61.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds