Wall clock time and date at job start Sun Mar 29 2020 22:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36356 * 119.91654 * 2 1 4 4 C 1.40869 * 119.83278 * 180.29245 * 3 2 1 5 5 C 1.41141 * 120.15540 * 179.73216 * 4 3 2 6 6 H 1.07996 * 120.00016 * 334.52957 * 5 4 3 7 7 C 1.39867 * 119.99818 * 154.53053 * 5 4 3 8 8 N 1.30899 * 120.00104 * 343.03455 * 7 5 4 9 9 Si 1.86802 * 119.99696 * 163.03477 * 7 5 4 10 10 H 1.48497 * 109.46832 * 90.00258 * 9 7 5 11 11 H 1.48501 * 109.46706 * 209.99744 * 9 7 5 12 12 H 1.48496 * 109.47290 * 330.00063 * 9 7 5 13 13 C 1.40902 * 119.68803 * 359.71455 * 4 3 2 14 14 C 1.36313 * 119.83802 * 359.97438 * 13 4 3 15 15 C 1.39546 * 119.91847 * 179.74708 * 2 1 3 16 16 N 1.38854 * 119.84262 * 0.02562 * 15 2 1 17 17 C 1.46500 * 120.00237 * 179.72271 * 16 15 2 18 18 C 1.52995 * 109.47395 * 180.02562 * 17 16 15 19 19 Cl 1.80302 * 109.47230 * 180.02562 * 18 17 16 20 20 H 1.08996 * 109.47546 * 270.25070 * 1 2 3 21 21 H 1.09000 * 109.46983 * 30.24951 * 1 2 3 22 22 H 1.09002 * 109.46778 * 150.24380 * 1 2 3 23 23 H 1.08000 * 120.08703 * 0.02562 * 3 2 1 24 24 H 0.97000 * 119.99846 * 179.97438 * 8 7 5 25 25 H 1.08003 * 120.07901 * 179.97438 * 13 4 3 26 26 H 1.08006 * 119.92359 * 179.97438 * 14 13 4 27 27 H 0.96999 * 120.00125 * 359.72135 * 16 15 2 28 28 H 1.09000 * 109.47082 * 59.99785 * 17 16 15 29 29 H 1.09001 * 109.46663 * 299.99863 * 17 16 15 30 30 H 1.09001 * 109.46918 * 299.99480 * 18 17 16 31 31 H 1.08993 * 109.47865 * 59.99290 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1819 0.0000 4 6 3.5958 1.1798 -0.0062 5 6 4.3065 2.3992 -0.0120 6 1 3.8472 3.2901 -0.4141 7 6 5.6058 2.4537 0.5030 8 7 6.0432 1.4942 1.2787 9 14 6.7168 3.8958 0.0840 10 1 6.5375 4.9687 1.0948 11 1 8.1322 3.4466 0.0847 12 1 6.3639 4.4182 -1.2605 13 6 4.2919 -0.0453 -0.0063 14 6 3.5989 -1.2191 0.0001 15 6 2.2031 -1.2095 0.0053 16 7 1.5038 -2.4091 0.0101 17 6 2.2309 -3.6809 0.0096 18 6 1.2319 -4.8396 0.0147 19 17 2.1268 -6.4048 0.0149 20 1 -0.3634 0.0045 1.0276 21 1 -0.3633 0.8877 -0.5177 22 1 -0.3633 -0.8922 -0.5101 23 1 1.6472 2.1172 0.0004 24 1 6.9444 1.5319 1.6355 25 1 5.3718 -0.0542 -0.0115 26 1 4.1310 -2.1589 -0.0004 27 1 0.5338 -2.4050 0.0138 28 1 2.8607 -3.7397 0.8973 29 1 2.8539 -3.7428 -0.8827 30 1 0.6086 -4.7779 0.9068 31 1 0.6023 -4.7807 -0.8730 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167816531.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:38 Heat of formation + Delta-G solvation = -0.201862 kcal Electronic energy + Delta-G solvation = -14377.758420 eV Core-core repulsion = 11876.997295 eV Total energy + Delta-G solvation = -2500.761125 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.35252 -36.35429 -35.19853 -33.41266 -31.34168 -30.25474 -28.06558 -25.81099 -24.23233 -22.93079 -20.02666 -20.00812 -16.85327 -16.28668 -15.49764 -15.34961 -14.93117 -13.79388 -13.52044 -13.14079 -13.10609 -12.51798 -12.38219 -12.32357 -11.78024 -11.69729 -11.51995 -11.02792 -10.93548 -10.74760 -10.54636 -10.52021 -10.35638 -9.67957 -9.32186 -9.25051 -8.57666 -7.37645 -6.63463 -6.40593 -4.05823 2.06876 2.90645 3.03489 3.14711 3.19237 3.32439 4.05113 4.34562 4.72278 4.75819 4.80262 5.19673 5.72371 5.87540 5.91087 5.96100 6.04178 6.27333 6.31877 6.52544 6.82687 6.93255 7.21295 7.36547 7.51272 7.68842 7.82091 8.14139 8.25066 8.43026 8.62649 8.76631 9.04917 9.13046 10.37060 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.034548 B = 0.005207 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.263829 B = 5376.330281 C = 6096.028695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.130 4.130 3 C -0.185 4.185 4 C 0.079 3.921 5 C -0.467 4.467 6 H 0.072 0.928 7 C 0.075 3.925 8 N -0.808 5.808 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.278 1.278 12 H -0.263 1.263 13 C -0.125 4.125 14 C -0.160 4.160 15 C 0.093 3.907 16 N -0.761 5.761 17 C 0.129 3.871 18 C -0.039 4.039 19 Cl -0.179 7.179 20 H 0.049 0.951 21 H 0.053 0.947 22 H 0.043 0.957 23 H 0.092 0.908 24 H 0.276 0.724 25 H 0.118 0.882 26 H 0.089 0.911 27 H 0.385 0.615 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 -8.524 -1.743 10.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.134 4.134 3 C -0.205 4.205 4 C 0.076 3.924 5 C -0.498 4.498 6 H 0.091 0.909 7 C -0.140 4.140 8 N -0.435 5.435 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.203 1.203 12 H -0.187 1.187 13 C -0.145 4.145 14 C -0.182 4.182 15 C -0.004 4.004 16 N -0.400 5.400 17 C 0.003 3.997 18 C -0.103 4.103 19 Cl -0.153 7.153 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.062 0.938 23 H 0.110 0.890 24 H 0.087 0.913 25 H 0.136 0.864 26 H 0.107 0.893 27 H 0.219 0.781 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.246 -8.813 -1.603 10.920 hybrid contribution 0.309 0.542 -0.025 0.624 sum -5.937 -8.271 -1.628 10.310 Atomic orbital electron populations 1.20488 0.94027 1.00409 1.00221 1.18634 0.93403 0.92259 1.09103 1.20446 0.94264 0.94831 1.10991 1.17488 0.90653 0.93219 0.91071 1.19361 0.98116 0.95979 1.36363 0.90943 1.25794 0.98395 0.96986 0.92844 1.69847 1.17769 1.32322 1.23580 0.86416 0.79196 0.81638 0.80006 1.19765 1.20323 1.18696 1.20933 0.99702 0.91065 1.02811 1.20097 0.91536 0.97600 1.08992 1.17072 0.90833 0.83942 1.08536 1.43782 1.06556 1.01770 1.87883 1.21227 0.93826 0.82594 1.02034 1.24463 0.96547 0.84044 1.05226 1.98714 1.79949 1.37226 1.99423 0.93171 0.92814 0.93761 0.88974 0.91293 0.86375 0.89289 0.78127 0.92221 0.92311 0.88707 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.55 36.01 0.34 -1.25 16 2 C -0.13 -2.83 5.86 -104.81 -0.61 -3.44 16 3 C -0.19 -4.53 9.37 -39.26 -0.37 -4.90 16 4 C 0.08 2.11 5.57 -106.79 -0.59 1.52 16 5 C -0.47 -12.66 9.03 -37.87 -0.34 -13.00 16 6 H 0.07 1.89 7.90 -52.49 -0.41 1.48 16 7 C 0.07 1.93 5.15 -17.34 -0.09 1.84 16 8 N -0.81 -21.47 10.96 55.54 0.61 -20.87 16 9 Si 0.90 19.20 29.59 -169.99 -5.03 14.17 16 10 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 13 C -0.13 -3.28 8.63 -39.27 -0.34 -3.61 16 14 C -0.16 -3.74 9.23 -39.77 -0.37 -4.11 16 15 C 0.09 1.98 6.65 -83.69 -0.56 1.42 16 16 N -0.76 -12.62 5.60 -58.50 -0.33 -12.95 16 17 C 0.13 1.83 5.01 -4.04 -0.02 1.81 16 18 C -0.04 -0.42 6.77 37.15 0.25 -0.16 16 19 Cl -0.18 -2.08 29.15 -51.86 -1.51 -3.59 16 20 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 21 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 22 H 0.04 0.65 6.53 -51.93 -0.34 0.31 16 23 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 24 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 25 H 0.12 3.22 6.19 -52.48 -0.32 2.89 16 26 H 0.09 1.90 6.68 -52.48 -0.35 1.55 16 27 H 0.38 5.52 6.43 -40.82 -0.26 5.26 16 28 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 29 H 0.06 0.88 7.93 -51.93 -0.41 0.47 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 275.88 15.07 4.16 4.16 Total: -1.00 -27.94 275.88 -8.56 -36.50 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -3.76 Total: 6.45 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -2.70 Total: -23.88 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.28 Total: -33.82 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -1.51 Total: -3.59 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.94 -8.56 -36.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167816531.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.296 kcal (2) G-P(sol) polarization free energy of solvation -27.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds