Wall clock time and date at job start Sun Mar 29 2020 22:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36356 * 119.91654 * 2 1 4 4 C 1.40869 * 119.83278 * 180.29245 * 3 2 1 5 5 C 1.41141 * 120.15540 * 179.73216 * 4 3 2 6 6 H 1.07996 * 120.00016 * 334.52957 * 5 4 3 7 7 C 1.39867 * 119.99818 * 154.53053 * 5 4 3 8 8 N 1.30899 * 120.00104 * 343.03455 * 7 5 4 9 9 Si 1.86802 * 119.99696 * 163.03477 * 7 5 4 10 10 H 1.48497 * 109.46832 * 90.00258 * 9 7 5 11 11 H 1.48501 * 109.46706 * 209.99744 * 9 7 5 12 12 H 1.48496 * 109.47290 * 330.00063 * 9 7 5 13 13 C 1.40902 * 119.68803 * 359.71455 * 4 3 2 14 14 C 1.36313 * 119.83802 * 359.97438 * 13 4 3 15 15 C 1.39546 * 119.91847 * 179.74708 * 2 1 3 16 16 N 1.38854 * 119.84262 * 0.02562 * 15 2 1 17 17 C 1.46500 * 120.00237 * 179.72271 * 16 15 2 18 18 C 1.52995 * 109.47395 * 180.02562 * 17 16 15 19 19 Cl 1.80302 * 109.47230 * 180.02562 * 18 17 16 20 20 H 1.08996 * 109.47546 * 270.25070 * 1 2 3 21 21 H 1.09000 * 109.46983 * 30.24951 * 1 2 3 22 22 H 1.09002 * 109.46778 * 150.24380 * 1 2 3 23 23 H 1.08000 * 120.08703 * 0.02562 * 3 2 1 24 24 H 0.97000 * 119.99846 * 179.97438 * 8 7 5 25 25 H 1.08003 * 120.07901 * 179.97438 * 13 4 3 26 26 H 1.08006 * 119.92359 * 179.97438 * 14 13 4 27 27 H 0.96999 * 120.00125 * 359.72135 * 16 15 2 28 28 H 1.09000 * 109.47082 * 59.99785 * 17 16 15 29 29 H 1.09001 * 109.46663 * 299.99863 * 17 16 15 30 30 H 1.09001 * 109.46918 * 299.99480 * 18 17 16 31 31 H 1.08993 * 109.47865 * 59.99290 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1819 0.0000 4 6 3.5958 1.1798 -0.0062 5 6 4.3065 2.3992 -0.0120 6 1 3.8472 3.2901 -0.4141 7 6 5.6058 2.4537 0.5030 8 7 6.0432 1.4942 1.2787 9 14 6.7168 3.8958 0.0840 10 1 6.5375 4.9687 1.0948 11 1 8.1322 3.4466 0.0847 12 1 6.3639 4.4182 -1.2605 13 6 4.2919 -0.0453 -0.0063 14 6 3.5989 -1.2191 0.0001 15 6 2.2031 -1.2095 0.0053 16 7 1.5038 -2.4091 0.0101 17 6 2.2309 -3.6809 0.0096 18 6 1.2319 -4.8396 0.0147 19 17 2.1268 -6.4048 0.0149 20 1 -0.3634 0.0045 1.0276 21 1 -0.3633 0.8877 -0.5177 22 1 -0.3633 -0.8922 -0.5101 23 1 1.6472 2.1172 0.0004 24 1 6.9444 1.5319 1.6355 25 1 5.3718 -0.0542 -0.0115 26 1 4.1310 -2.1589 -0.0004 27 1 0.5338 -2.4050 0.0138 28 1 2.8607 -3.7397 0.8973 29 1 2.8539 -3.7428 -0.8827 30 1 0.6086 -4.7779 0.9068 31 1 0.6023 -4.7807 -0.8730 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167816531.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:38 Heat of formation + Delta-G solvation = -15.494917 kcal Electronic energy + Delta-G solvation = -14378.421576 eV Core-core repulsion = 11876.997295 eV Total energy + Delta-G solvation = -2501.424282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.06727 -37.46207 -36.61883 -35.10725 -33.06605 -31.77642 -29.64755 -27.48109 -25.96079 -24.22935 -21.82417 -21.68343 -18.75516 -17.91984 -16.94381 -16.69656 -16.37144 -15.44337 -14.93855 -14.69110 -14.52008 -14.07015 -13.79871 -13.51648 -13.42510 -13.30101 -13.09641 -12.73894 -12.59046 -12.32463 -12.17774 -11.55282 -11.46944 -11.37926 -11.17331 -11.04485 -10.32308 -9.22772 -8.53167 -8.14635 -6.02008 1.11079 1.16161 1.17264 1.39907 1.52085 1.58634 2.27333 2.83410 3.01370 3.71737 3.81500 3.94533 4.31255 4.38679 4.43706 4.70135 4.79172 4.84028 4.95815 5.03183 5.09798 5.14495 5.32036 5.52578 5.68524 5.88014 5.98884 6.20870 6.40025 6.63724 6.84829 7.08851 7.13145 7.29716 8.48739 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.034548 B = 0.005207 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.263829 B = 5376.330281 C = 6096.028695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.137 4.137 3 C -0.196 4.196 4 C 0.039 3.961 5 C -0.507 4.507 6 H 0.068 0.932 7 C 0.032 3.968 8 N -0.843 5.843 9 Si 0.976 3.024 10 H -0.264 1.264 11 H -0.269 1.269 12 H -0.261 1.261 13 C -0.149 4.149 14 C -0.173 4.173 15 C 0.109 3.891 16 N -0.748 5.748 17 C 0.126 3.874 18 C -0.028 4.028 19 Cl -0.186 7.186 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.096 0.904 24 H 0.282 0.718 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.401 0.599 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.114 0.886 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.430 -9.465 -1.987 12.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C -0.217 4.217 4 C 0.036 3.964 5 C -0.538 4.538 6 H 0.086 0.914 7 C -0.180 4.180 8 N -0.472 5.472 9 Si 0.797 3.203 10 H -0.189 1.189 11 H -0.194 1.194 12 H -0.185 1.185 13 C -0.170 4.170 14 C -0.195 4.195 15 C 0.010 3.990 16 N -0.386 5.386 17 C 0.001 3.999 18 C -0.091 4.091 19 Cl -0.160 7.160 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.114 0.886 24 H 0.092 0.908 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.238 0.762 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.132 0.868 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.027 -9.793 -1.848 12.797 hybrid contribution 0.711 0.680 0.052 0.985 sum -7.317 -9.113 -1.796 11.824 Atomic orbital electron populations 1.20521 0.90068 1.02339 1.01735 1.19122 0.96336 0.91284 1.07412 1.20678 0.93652 0.96357 1.10969 1.17820 0.92102 0.93558 0.92896 1.19601 0.99750 0.96197 1.38249 0.91408 1.26608 0.99331 0.99878 0.92150 1.69920 1.18360 1.34324 1.24579 0.85312 0.77195 0.78087 0.79703 1.18916 1.19400 1.18497 1.20828 0.98889 0.92198 1.05042 1.20250 0.92854 0.97183 1.09237 1.17183 0.90366 0.85835 1.05581 1.43735 1.07361 1.01037 1.86498 1.21297 0.94666 0.82829 1.01131 1.24407 0.95349 0.81982 1.07329 1.98724 1.80327 1.37490 1.99467 0.91672 0.91923 0.90929 0.88611 0.90821 0.88616 0.87982 0.76249 0.93389 0.93048 0.86790 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.71 9.55 71.24 0.68 -2.03 16 2 C -0.14 -5.76 5.86 -19.99 -0.12 -5.88 16 3 C -0.20 -9.72 9.37 22.47 0.21 -9.51 16 4 C 0.04 2.18 5.57 -21.27 -0.12 2.06 16 5 C -0.51 -28.68 9.03 23.38 0.21 -28.47 16 6 H 0.07 3.71 7.90 -2.91 -0.02 3.69 16 7 C 0.03 1.70 5.15 85.23 0.44 2.14 16 8 N -0.84 -46.68 10.96 21.82 0.24 -46.44 16 9 Si 0.98 40.43 29.59 68.60 2.03 42.46 16 10 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 11 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 12 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 13 C -0.15 -8.15 8.63 22.47 0.19 -7.96 16 14 C -0.17 -8.15 9.23 22.15 0.20 -7.94 16 15 C 0.11 4.50 6.65 38.67 0.26 4.76 16 16 N -0.75 -22.46 5.60 -339.00 -1.90 -24.36 16 17 C 0.13 3.26 5.01 86.38 0.43 3.70 16 18 C -0.03 -0.48 6.77 71.98 0.49 0.00 16 19 Cl -0.19 -3.86 29.15 -2.72 -0.08 -3.94 16 20 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 21 H 0.06 1.80 8.08 -2.39 -0.02 1.78 16 22 H 0.07 1.77 6.53 -2.39 -0.02 1.76 16 23 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 24 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 25 H 0.10 5.54 6.19 -2.91 -0.02 5.52 16 26 H 0.10 4.40 6.68 -2.91 -0.02 4.38 16 27 H 0.40 9.67 6.43 -92.71 -0.60 9.07 16 28 H 0.05 1.39 7.93 -2.39 -0.02 1.37 16 29 H 0.05 1.44 7.93 -2.39 -0.02 1.42 16 30 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -62.85 275.88 3.71 -59.13 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.54 Total: 22.27 kcal Atomic # 6 Polarization: -52.01 SS G_CDS: 2.88 Total: -49.13 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -1.66 Total: -70.80 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 17 Polarization: -3.86 SS G_CDS: -0.08 Total: -3.94 kcal Total: -62.85 3.71 -59.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167816531.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.638 kcal (2) G-P(sol) polarization free energy of solvation -62.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds