Wall clock time and date at job start Sun Mar 29 2020 22:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 C 1.38247 * 119.98738 * 269.72879 * 5 4 2 7 7 C 1.38217 * 120.01380 * 179.72325 * 6 5 4 8 8 C 1.38349 * 119.98268 * 0.55044 * 7 6 5 9 9 Cl 1.73606 * 120.00986 * 179.70638 * 8 7 6 10 10 C 1.38352 * 119.97811 * 359.72469 * 8 7 6 11 11 C 1.38214 * 119.98456 * 359.97438 * 10 8 7 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.36939 * 119.99792 * 84.99599 * 12 2 1 14 14 H 1.08001 * 119.99680 * 0.02562 * 13 12 2 15 15 C 1.38809 * 119.99850 * 179.97438 * 13 12 2 16 16 N 1.31627 * 119.99799 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00165 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47258 * 89.99481 * 17 15 13 19 19 H 1.48497 * 109.47471 * 209.99641 * 17 15 13 20 20 H 1.48497 * 109.47336 * 329.99634 * 17 15 13 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 25 25 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 26 26 H 1.08001 * 119.98899 * 0.02562 * 6 5 4 27 27 H 1.07996 * 120.00850 * 180.27219 * 7 6 5 28 28 H 1.08001 * 120.00991 * 180.02562 * 10 8 7 29 29 H 1.07998 * 119.99258 * 179.97438 * 11 10 8 30 30 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 31 31 H 0.97005 * 119.99350 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 6 4.3289 -1.5847 0.7203 7 6 5.7065 -1.4847 0.7733 8 6 6.2976 -0.4197 1.4293 9 17 8.0278 -0.2975 1.5029 10 6 5.5095 0.5476 2.0270 11 6 4.1321 0.4498 1.9680 12 7 2.0184 -0.6906 -1.1961 13 6 2.1491 -0.0075 -2.3757 14 1 1.8925 1.0404 -2.4241 15 6 2.6124 -0.6618 -3.5089 16 7 2.7385 -0.0050 -4.6426 17 14 3.0568 -2.4741 -3.4250 18 1 1.8598 -3.2927 -3.7448 19 1 4.1326 -2.7660 -4.4061 20 1 3.5314 -2.8047 -2.0572 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.6054 -0.2617 2.1370 25 1 1.7517 -1.7714 1.2056 26 1 3.8672 -2.4181 0.2117 27 1 6.3212 -2.2401 0.3066 28 1 5.9704 1.3794 2.5390 29 1 3.5167 1.2046 2.4349 30 1 2.2490 -1.6317 -1.1525 31 1 3.0619 -0.4624 -5.4346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168149096.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:42 Heat of formation + Delta-G solvation = 0.276220 kcal Electronic energy + Delta-G solvation = -14742.097932 eV Core-core repulsion = 12241.357538 eV Total energy + Delta-G solvation = -2500.740394 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.42187 -37.95142 -37.16068 -34.48263 -32.52655 -31.95759 -30.79972 -27.23771 -25.37622 -23.76348 -22.55704 -21.43508 -19.63427 -18.02172 -16.95020 -16.37287 -16.25837 -15.77053 -15.01022 -14.92634 -14.47638 -14.33470 -14.18659 -13.82243 -13.38596 -12.95568 -12.91207 -12.56864 -12.38092 -12.25279 -12.09530 -11.89692 -11.76290 -11.68670 -11.52553 -10.96559 -9.93207 -9.43297 -9.23071 -7.98276 -5.28984 0.24697 0.40687 1.17872 1.35489 1.40126 1.47112 2.50841 2.72009 3.34267 3.65667 3.86125 3.94017 4.01129 4.28998 4.42647 4.46243 4.60672 4.69902 4.84074 4.88413 5.04299 5.07425 5.11847 5.30080 5.32276 5.35555 5.61134 5.70329 5.83569 5.94413 6.26161 7.14048 7.91594 8.09805 9.23948 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.008456 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.593266 B = 3310.291186 C = 4145.948339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.041 0.959 4 C -0.082 4.082 5 C -0.068 4.068 6 C -0.110 4.110 7 C -0.124 4.124 8 C -0.054 4.054 9 Cl -0.078 7.078 10 C -0.114 4.114 11 C -0.108 4.108 12 N -0.746 5.746 13 C -0.214 4.214 14 H 0.053 0.947 15 C -0.068 4.068 16 N -0.989 5.989 17 Si 0.946 3.054 18 H -0.282 1.282 19 H -0.303 1.303 20 H -0.242 1.242 21 H 0.053 0.947 22 H 0.028 0.972 23 H 0.077 0.923 24 H 0.111 0.889 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.150 0.850 29 H 0.156 0.844 30 H 0.364 0.636 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 -2.726 18.108 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.066 3.934 3 H 0.059 0.941 4 C -0.120 4.120 5 C -0.068 4.068 6 C -0.128 4.128 7 C -0.143 4.143 8 C -0.081 4.081 9 Cl -0.049 7.049 10 C -0.132 4.132 11 C -0.126 4.126 12 N -0.390 5.390 13 C -0.346 4.346 14 H 0.071 0.929 15 C -0.259 4.259 16 N -0.641 5.641 17 Si 0.774 3.226 18 H -0.208 1.208 19 H -0.231 1.231 20 H -0.167 1.167 21 H 0.072 0.928 22 H 0.047 0.953 23 H 0.096 0.904 24 H 0.130 0.870 25 H 0.098 0.902 26 H 0.140 0.860 27 H 0.150 0.850 28 H 0.168 0.832 29 H 0.174 0.826 30 H 0.197 0.803 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.553 -2.535 18.007 18.528 hybrid contribution 0.620 -0.919 -1.010 1.500 sum 4.172 -3.455 16.996 17.839 Atomic orbital electron populations 1.22287 0.96956 1.01522 1.00921 1.20446 0.92862 0.95176 0.84960 0.94078 1.20974 0.89936 1.02374 0.98668 1.20144 0.96780 0.94226 0.95626 1.21139 0.92959 1.00036 0.98653 1.21151 0.95395 0.98136 0.99570 1.21006 0.84429 0.98690 1.03927 1.98339 1.11093 1.98021 1.97455 1.21257 0.93756 0.98381 0.99845 1.21296 0.94069 0.97962 0.99306 1.42776 1.79810 1.09486 1.06925 1.18991 1.34021 0.94233 0.87340 0.92881 1.25433 1.02889 1.02258 0.95304 1.69894 1.55408 1.37571 1.01195 0.85545 0.77455 0.81252 0.78345 1.20806 1.23084 1.16668 0.92818 0.95292 0.90387 0.87035 0.90205 0.86017 0.84985 0.83223 0.82635 0.80294 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.81 9.49 71.98 0.68 -4.12 16 2 C 0.17 5.93 2.88 44.99 0.13 6.06 16 3 H 0.04 1.53 8.08 -2.39 -0.02 1.52 16 4 C -0.08 -2.08 4.89 29.85 0.15 -1.93 16 5 C -0.07 -1.91 4.95 -19.86 -0.10 -2.01 16 6 C -0.11 -3.40 9.10 22.27 0.20 -3.20 16 7 C -0.12 -3.73 9.83 22.29 0.22 -3.52 16 8 C -0.05 -1.53 6.32 22.32 0.14 -1.39 16 9 Cl -0.08 -2.00 28.96 -2.72 -0.08 -2.07 16 10 C -0.11 -2.87 9.83 22.29 0.22 -2.66 16 11 C -0.11 -2.70 9.70 22.26 0.22 -2.48 16 12 N -0.75 -32.96 4.38 -322.94 -1.42 -34.38 16 13 C -0.21 -12.04 10.41 84.03 0.87 -11.17 16 14 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 15 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 16 N -0.99 -64.30 13.97 21.65 0.30 -63.99 16 17 Si 0.95 45.43 27.74 68.60 1.90 47.33 16 18 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 20 H -0.24 -10.14 6.24 99.48 0.62 -9.52 16 21 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.11 2.06 8.09 -2.39 -0.02 2.04 16 25 H 0.08 1.91 8.08 -2.39 -0.02 1.89 16 26 H 0.12 3.79 7.31 -2.91 -0.02 3.77 16 27 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 28 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 29 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.36 15.40 4.91 -92.71 -0.45 14.94 16 31 H 0.25 15.85 8.31 -92.70 -0.77 15.08 16 Total: -1.00 -67.61 279.84 4.49 -63.12 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.58 Total: 19.96 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 3.20 Total: -29.97 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -1.11 Total: -98.37 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.90 Total: 47.33 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.08 Total: -2.07 kcal Total: -67.61 4.49 -63.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168149096.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.400 kcal (2) G-P(sol) polarization free energy of solvation -67.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds