Wall clock time and date at job start Sun Mar 29 2020 22:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 N 1.35503 * 179.97438 * 2 1 4 4 C 1.38443 * 119.99912 * 127.95761 * 3 2 1 5 5 N 1.31313 * 119.76038 * 354.48297 * 4 3 2 6 6 C 1.34003 * 121.97586 * 179.97438 * 5 4 3 7 7 C 1.40450 * 120.12024 * 179.97438 * 6 5 4 8 8 C 1.36281 * 119.96644 * 180.02562 * 7 6 5 9 9 C 1.39305 * 121.06932 * 359.97438 * 8 7 6 10 10 C 1.36127 * 120.77409 * 0.04225 * 9 8 7 11 11 C 1.40847 * 119.71069 * 359.96397 * 10 9 8 12 12 C 1.40209 * 120.58989 * 179.97438 * 11 10 9 13 13 C 1.40302 * 118.13084 * 180.27137 * 12 11 10 14 14 C 1.40912 * 120.69597 * 179.74715 * 13 12 11 15 15 H 1.08008 * 119.99536 * 207.73458 * 14 13 12 16 16 C 1.40057 * 120.00488 * 27.73399 * 14 13 12 17 17 N 1.30787 * 119.99946 * 12.33085 * 16 14 13 18 18 Si 1.86800 * 120.00054 * 192.33425 * 16 14 13 19 19 H 1.48499 * 109.47497 * 89.99879 * 18 16 14 20 20 H 1.48501 * 109.47317 * 209.99977 * 18 16 14 21 21 H 1.48505 * 109.47251 * 329.99997 * 18 16 14 22 22 H 0.97001 * 119.99855 * 307.95713 * 3 2 1 23 23 H 1.08004 * 120.02160 * 0.04336 * 7 6 5 24 24 H 1.08000 * 119.46349 * 179.97438 * 8 7 6 25 25 H 1.08000 * 119.60928 * 180.02562 * 9 8 7 26 26 H 1.08004 * 120.14201 * 180.02562 * 10 9 8 27 27 H 1.08001 * 120.93612 * 359.97438 * 12 11 10 28 28 H 0.97001 * 119.99846 * 174.98187 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 7 2.4911 0.0006 0.0000 4 6 3.1829 0.7384 -0.9453 5 7 2.5259 1.3478 -1.9051 6 6 3.1504 2.0737 -2.8426 7 6 2.4088 2.7089 -3.8522 8 6 3.0472 3.4459 -4.8043 9 6 4.4333 3.5843 -4.7968 10 6 5.1880 2.9844 -3.8358 11 6 4.5622 2.2148 -2.8359 12 6 5.3216 1.5883 -1.8376 13 6 4.6455 0.8295 -0.8704 14 6 5.3558 0.1725 0.1541 15 1 4.9526 -0.7241 0.6013 16 6 6.5845 0.6822 0.5924 17 7 6.9600 1.8825 0.2335 18 14 7.6869 -0.3523 1.6896 19 1 8.6048 -1.1609 0.8477 20 1 8.4813 0.5379 2.5737 21 1 6.8510 -1.2566 2.5197 22 1 2.9763 -0.5159 0.6624 23 1 1.3332 2.6136 -3.8739 24 1 2.4690 3.9306 -5.5771 25 1 4.9148 4.1744 -5.5626 26 1 6.2620 3.0988 -3.8395 27 1 6.3973 1.6832 -1.8166 28 1 7.7754 2.2639 0.5949 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168627746.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:43 Heat of formation + Delta-G solvation = 66.024484 kcal Electronic energy + Delta-G solvation = -15616.909358 eV Core-core repulsion = 13017.912529 eV Total energy + Delta-G solvation = -2598.996829 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.10561 -39.01767 -37.24282 -35.94809 -34.87732 -33.35861 -31.12653 -30.09077 -27.36256 -24.71812 -23.67230 -22.58784 -20.65252 -20.07452 -18.92357 -17.58951 -17.34212 -16.37816 -15.92394 -15.74520 -15.06095 -14.77920 -14.58759 -14.57158 -14.15994 -13.71729 -13.40736 -13.32865 -12.90865 -12.79555 -12.58814 -12.27169 -12.02665 -11.67182 -11.27535 -10.82953 -10.68104 -10.24944 -9.06234 -8.73307 -8.61751 -6.35859 -0.03969 0.37613 1.35448 1.41106 1.49325 1.58271 1.60978 1.92647 2.03268 2.21528 2.42080 2.97065 3.65161 3.70479 4.13274 4.22788 4.32968 4.55330 4.70726 4.74498 5.00639 5.15083 5.28024 5.35995 5.55594 5.72588 5.79474 5.91394 5.95145 6.08984 6.33580 6.49117 6.69903 6.73069 6.93925 7.45663 8.26094 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.018186 B = 0.009915 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.255073 B = 2823.202560 C = 4284.672857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.441 3.559 3 N -0.570 5.570 4 C 0.339 3.661 5 N -0.545 5.545 6 C 0.042 3.958 7 C -0.097 4.097 8 C -0.149 4.149 9 C -0.116 4.116 10 C -0.136 4.136 11 C -0.077 4.077 12 C -0.191 4.191 13 C 0.041 3.959 14 C -0.457 4.457 15 H 0.107 0.893 16 C 0.036 3.964 17 N -0.809 5.809 18 Si 0.989 3.011 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.246 1.246 22 H 0.452 0.548 23 H 0.118 0.882 24 H 0.147 0.853 25 H 0.147 0.853 26 H 0.123 0.877 27 H 0.127 0.873 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 -0.861 -1.613 3.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.160 5.160 2 C 0.036 3.964 3 N -0.213 5.213 4 C 0.088 3.912 5 N -0.262 5.262 6 C -0.077 4.077 7 C -0.116 4.116 8 C -0.168 4.168 9 C -0.135 4.135 10 C -0.155 4.155 11 C -0.080 4.080 12 C -0.218 4.218 13 C 0.034 3.966 14 C -0.486 4.486 15 H 0.125 0.875 16 C -0.182 4.182 17 N -0.433 5.433 18 Si 0.810 3.190 19 H -0.191 1.191 20 H -0.200 1.200 21 H -0.169 1.169 22 H 0.298 0.702 23 H 0.136 0.864 24 H 0.165 0.835 25 H 0.165 0.835 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.305 -0.652 -1.821 1.958 hybrid contribution 2.022 -0.311 0.849 2.215 sum 2.327 -0.963 -0.972 2.700 Atomic orbital electron populations 1.81770 1.06357 1.15643 1.12209 1.23491 0.86678 0.92702 0.93503 1.39135 0.96656 1.51243 1.34279 1.20078 0.88463 0.93552 0.89115 1.66846 1.40611 1.13664 1.05042 1.18406 0.90667 1.01788 0.96798 1.20734 0.99195 0.97633 0.94056 1.20859 0.94943 1.01262 0.99780 1.21010 0.93964 0.99736 0.98743 1.21115 0.99841 0.98986 0.95569 1.18942 0.93477 0.98572 0.97040 1.21385 0.99052 1.06268 0.95083 1.19050 0.87098 0.95804 0.94648 1.19765 1.03049 1.10064 1.15710 0.87543 1.26797 0.98333 0.95561 0.97521 1.69811 1.22491 1.14882 1.36158 0.85062 0.77863 0.78450 0.77653 1.19146 1.20047 1.16937 0.70154 0.86397 0.83524 0.83501 0.85871 0.85566 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.63 18.54 17.21 0.32 -18.31 15 2 C 0.44 16.99 15.95 184.39 2.94 19.93 15 3 N -0.57 -21.25 5.34 -88.66 -0.47 -21.73 15 4 C 0.34 15.31 7.62 135.58 1.03 16.35 15 5 N -0.55 -26.08 9.42 -180.79 -1.70 -27.78 15 6 C 0.04 1.95 6.60 40.25 0.27 2.21 15 7 C -0.10 -3.85 9.94 22.35 0.22 -3.63 15 8 C -0.15 -4.89 9.95 22.07 0.22 -4.67 15 9 C -0.12 -3.78 9.96 22.04 0.22 -3.56 15 10 C -0.14 -5.29 9.75 22.42 0.22 -5.07 15 11 C -0.08 -3.58 5.74 -21.26 -0.12 -3.70 15 12 C -0.19 -9.29 8.50 23.25 0.20 -9.10 15 13 C 0.04 1.92 5.71 -19.90 -0.11 1.81 15 14 C -0.46 -19.62 8.57 23.37 0.20 -19.42 15 15 H 0.11 3.92 6.81 -2.91 -0.02 3.90 15 16 C 0.04 1.48 5.25 85.29 0.45 1.93 15 17 N -0.81 -36.73 10.89 21.85 0.24 -36.49 15 18 Si 0.99 31.52 29.58 68.60 2.03 33.55 15 19 H -0.27 -8.52 7.11 99.48 0.71 -7.81 15 20 H -0.28 -8.74 7.11 99.48 0.71 -8.03 15 21 H -0.25 -7.27 7.11 99.48 0.71 -6.56 15 22 H 0.45 13.80 7.19 -92.71 -0.67 13.13 15 23 H 0.12 4.42 8.06 -2.91 -0.02 4.40 15 24 H 0.15 3.65 8.06 -2.91 -0.02 3.63 15 25 H 0.15 3.57 8.06 -2.91 -0.02 3.55 15 26 H 0.12 4.38 8.06 -2.91 -0.02 4.36 15 27 H 0.13 6.29 6.30 -2.91 -0.02 6.27 15 28 H 0.29 12.08 8.30 -92.71 -0.77 11.31 15 Total: -1.00 -56.23 259.46 6.69 -49.53 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.55 Total: 28.14 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.73 Total: -6.92 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -1.62 Total: -104.30 kcal Atomic # 14 Polarization: 31.52 SS G_CDS: 2.03 Total: 33.55 kcal Total: -56.23 6.69 -49.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168627746.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.557 kcal (2) G-P(sol) polarization free energy of solvation -56.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds