Wall clock time and date at job start Sun Mar 29 2020 22:19:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13603 * 1
3 3 N 1.35503 * 179.97438 * 2 1
4 4 C 1.38443 * 119.99912 * 127.95761 * 3 2 1
5 5 N 1.31313 * 119.76038 * 354.48297 * 4 3 2
6 6 C 1.34003 * 121.97586 * 179.97438 * 5 4 3
7 7 C 1.40450 * 120.12024 * 179.97438 * 6 5 4
8 8 C 1.36281 * 119.96644 * 180.02562 * 7 6 5
9 9 C 1.39305 * 121.06932 * 359.97438 * 8 7 6
10 10 C 1.36127 * 120.77409 * 0.04225 * 9 8 7
11 11 C 1.40847 * 119.71069 * 359.96397 * 10 9 8
12 12 C 1.40209 * 120.58989 * 179.97438 * 11 10 9
13 13 C 1.40302 * 118.13084 * 180.27137 * 12 11 10
14 14 C 1.40912 * 120.69597 * 179.74715 * 13 12 11
15 15 H 1.08008 * 119.99536 * 207.73458 * 14 13 12
16 16 C 1.40057 * 120.00488 * 27.73399 * 14 13 12
17 17 N 1.30787 * 119.99946 * 12.33085 * 16 14 13
18 18 Si 1.86800 * 120.00054 * 192.33425 * 16 14 13
19 19 H 1.48499 * 109.47497 * 89.99879 * 18 16 14
20 20 H 1.48501 * 109.47317 * 209.99977 * 18 16 14
21 21 H 1.48505 * 109.47251 * 329.99997 * 18 16 14
22 22 H 0.97001 * 119.99855 * 307.95713 * 3 2 1
23 23 H 1.08004 * 120.02160 * 0.04336 * 7 6 5
24 24 H 1.08000 * 119.46349 * 179.97438 * 8 7 6
25 25 H 1.08000 * 119.60928 * 180.02562 * 9 8 7
26 26 H 1.08004 * 120.14201 * 180.02562 * 10 9 8
27 27 H 1.08001 * 120.93612 * 359.97438 * 12 11 10
28 28 H 0.97001 * 119.99846 * 174.98187 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 7 2.4911 0.0006 0.0000
4 6 3.1829 0.7384 -0.9453
5 7 2.5259 1.3478 -1.9051
6 6 3.1504 2.0737 -2.8426
7 6 2.4088 2.7089 -3.8522
8 6 3.0472 3.4459 -4.8043
9 6 4.4333 3.5843 -4.7968
10 6 5.1880 2.9844 -3.8358
11 6 4.5622 2.2148 -2.8359
12 6 5.3216 1.5883 -1.8376
13 6 4.6455 0.8295 -0.8704
14 6 5.3558 0.1725 0.1541
15 1 4.9526 -0.7241 0.6013
16 6 6.5845 0.6822 0.5924
17 7 6.9600 1.8825 0.2335
18 14 7.6869 -0.3523 1.6896
19 1 8.6048 -1.1609 0.8477
20 1 8.4813 0.5379 2.5737
21 1 6.8510 -1.2566 2.5197
22 1 2.9763 -0.5159 0.6624
23 1 1.3332 2.6136 -3.8739
24 1 2.4690 3.9306 -5.5771
25 1 4.9148 4.1744 -5.5626
26 1 6.2620 3.0988 -3.8395
27 1 6.3973 1.6832 -1.8166
28 1 7.7754 2.2639 0.5949
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001168627746.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:19:43
Heat of formation + Delta-G solvation = 66.024484 kcal
Electronic energy + Delta-G solvation = -15616.909358 eV
Core-core repulsion = 13017.912529 eV
Total energy + Delta-G solvation = -2598.996829 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 239.075 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.10561 -39.01767 -37.24282 -35.94809 -34.87732 -33.35861 -31.12653 -30.09077
-27.36256 -24.71812 -23.67230 -22.58784 -20.65252 -20.07452 -18.92357 -17.58951
-17.34212 -16.37816 -15.92394 -15.74520 -15.06095 -14.77920 -14.58759 -14.57158
-14.15994 -13.71729 -13.40736 -13.32865 -12.90865 -12.79555 -12.58814 -12.27169
-12.02665 -11.67182 -11.27535 -10.82953 -10.68104 -10.24944 -9.06234 -8.73307
-8.61751 -6.35859 -0.03969 0.37613 1.35448 1.41106 1.49325 1.58271
1.60978 1.92647 2.03268 2.21528 2.42080 2.97065 3.65161 3.70479
4.13274 4.22788 4.32968 4.55330 4.70726 4.74498 5.00639 5.15083
5.28024 5.35995 5.55594 5.72588 5.79474 5.91394 5.95145 6.08984
6.33580 6.49117 6.69903 6.73069 6.93925 7.45663 8.26094
Molecular weight = 239.08amu
Principal moments of inertia in cm(-1)
A = 0.018186 B = 0.009915 C = 0.006533
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1539.255073 B = 2823.202560 C = 4284.672857
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.464 5.464
2 C 0.441 3.559
3 N -0.570 5.570
4 C 0.339 3.661
5 N -0.545 5.545
6 C 0.042 3.958
7 C -0.097 4.097
8 C -0.149 4.149
9 C -0.116 4.116
10 C -0.136 4.136
11 C -0.077 4.077
12 C -0.191 4.191
13 C 0.041 3.959
14 C -0.457 4.457
15 H 0.107 0.893
16 C 0.036 3.964
17 N -0.809 5.809
18 Si 0.989 3.011
19 H -0.267 1.267
20 H -0.276 1.276
21 H -0.246 1.246
22 H 0.452 0.548
23 H 0.118 0.882
24 H 0.147 0.853
25 H 0.147 0.853
26 H 0.123 0.877
27 H 0.127 0.873
28 H 0.293 0.707
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.682 -0.861 -1.613 3.246
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.160 5.160
2 C 0.036 3.964
3 N -0.213 5.213
4 C 0.088 3.912
5 N -0.262 5.262
6 C -0.077 4.077
7 C -0.116 4.116
8 C -0.168 4.168
9 C -0.135 4.135
10 C -0.155 4.155
11 C -0.080 4.080
12 C -0.218 4.218
13 C 0.034 3.966
14 C -0.486 4.486
15 H 0.125 0.875
16 C -0.182 4.182
17 N -0.433 5.433
18 Si 0.810 3.190
19 H -0.191 1.191
20 H -0.200 1.200
21 H -0.169 1.169
22 H 0.298 0.702
23 H 0.136 0.864
24 H 0.165 0.835
25 H 0.165 0.835
26 H 0.141 0.859
27 H 0.144 0.856
28 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges 0.305 -0.652 -1.821 1.958
hybrid contribution 2.022 -0.311 0.849 2.215
sum 2.327 -0.963 -0.972 2.700
Atomic orbital electron populations
1.81770 1.06357 1.15643 1.12209 1.23491 0.86678 0.92702 0.93503
1.39135 0.96656 1.51243 1.34279 1.20078 0.88463 0.93552 0.89115
1.66846 1.40611 1.13664 1.05042 1.18406 0.90667 1.01788 0.96798
1.20734 0.99195 0.97633 0.94056 1.20859 0.94943 1.01262 0.99780
1.21010 0.93964 0.99736 0.98743 1.21115 0.99841 0.98986 0.95569
1.18942 0.93477 0.98572 0.97040 1.21385 0.99052 1.06268 0.95083
1.19050 0.87098 0.95804 0.94648 1.19765 1.03049 1.10064 1.15710
0.87543 1.26797 0.98333 0.95561 0.97521 1.69811 1.22491 1.14882
1.36158 0.85062 0.77863 0.78450 0.77653 1.19146 1.20047 1.16937
0.70154 0.86397 0.83524 0.83501 0.85871 0.85566 0.89593
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.46 -18.63 18.54 17.21 0.32 -18.31 15
2 C 0.44 16.99 15.95 184.39 2.94 19.93 15
3 N -0.57 -21.25 5.34 -88.66 -0.47 -21.73 15
4 C 0.34 15.31 7.62 135.58 1.03 16.35 15
5 N -0.55 -26.08 9.42 -180.79 -1.70 -27.78 15
6 C 0.04 1.95 6.60 40.25 0.27 2.21 15
7 C -0.10 -3.85 9.94 22.35 0.22 -3.63 15
8 C -0.15 -4.89 9.95 22.07 0.22 -4.67 15
9 C -0.12 -3.78 9.96 22.04 0.22 -3.56 15
10 C -0.14 -5.29 9.75 22.42 0.22 -5.07 15
11 C -0.08 -3.58 5.74 -21.26 -0.12 -3.70 15
12 C -0.19 -9.29 8.50 23.25 0.20 -9.10 15
13 C 0.04 1.92 5.71 -19.90 -0.11 1.81 15
14 C -0.46 -19.62 8.57 23.37 0.20 -19.42 15
15 H 0.11 3.92 6.81 -2.91 -0.02 3.90 15
16 C 0.04 1.48 5.25 85.29 0.45 1.93 15
17 N -0.81 -36.73 10.89 21.85 0.24 -36.49 15
18 Si 0.99 31.52 29.58 68.60 2.03 33.55 15
19 H -0.27 -8.52 7.11 99.48 0.71 -7.81 15
20 H -0.28 -8.74 7.11 99.48 0.71 -8.03 15
21 H -0.25 -7.27 7.11 99.48 0.71 -6.56 15
22 H 0.45 13.80 7.19 -92.71 -0.67 13.13 15
23 H 0.12 4.42 8.06 -2.91 -0.02 4.40 15
24 H 0.15 3.65 8.06 -2.91 -0.02 3.63 15
25 H 0.15 3.57 8.06 -2.91 -0.02 3.55 15
26 H 0.12 4.38 8.06 -2.91 -0.02 4.36 15
27 H 0.13 6.29 6.30 -2.91 -0.02 6.27 15
28 H 0.29 12.08 8.30 -92.71 -0.77 11.31 15
Total: -1.00 -56.23 259.46 6.69 -49.53
By element:
Atomic # 1 Polarization: 27.58 SS G_CDS: 0.55 Total: 28.14 kcal
Atomic # 6 Polarization: -12.65 SS G_CDS: 5.73 Total: -6.92 kcal
Atomic # 7 Polarization: -102.69 SS G_CDS: -1.62 Total: -104.30 kcal
Atomic # 14 Polarization: 31.52 SS G_CDS: 2.03 Total: 33.55 kcal
Total: -56.23 6.69 -49.53 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001168627746.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.557 kcal
(2) G-P(sol) polarization free energy of solvation -56.226 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.331 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.693 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.533 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.024 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds