Wall clock time and date at job start Sun Mar 29 2020 22:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47664 * 2 1 4 4 C 1.53002 * 109.47253 * 239.99487 * 2 1 3 5 5 C 1.50699 * 109.47263 * 174.99999 * 4 2 1 6 6 C 1.38234 * 120.00639 * 100.00442 * 5 4 2 7 7 C 1.38216 * 120.01494 * 180.02562 * 6 5 4 8 8 C 1.38265 * 120.02667 * 359.96105 * 7 6 5 9 9 C 1.38195 * 120.01144 * 0.02562 * 8 7 6 10 10 C 1.38328 * 120.00778 * 280.27819 * 5 4 2 11 11 Cl 1.73604 * 120.01692 * 0.02562 * 10 5 4 12 12 N 1.46506 * 109.46992 * 120.00317 * 2 1 3 13 13 C 1.36938 * 119.99486 * 274.99538 * 12 2 1 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 12 2 15 15 C 1.38814 * 119.99885 * 179.97438 * 13 12 2 16 16 N 1.31617 * 119.99785 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00208 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47246 * 89.99969 * 17 15 13 19 19 H 1.48505 * 109.47350 * 210.00346 * 17 15 13 20 20 H 1.48501 * 109.47011 * 329.99974 * 17 15 13 21 21 H 1.09005 * 109.46989 * 300.00117 * 1 2 3 22 22 H 1.08999 * 109.46969 * 60.00102 * 1 2 3 23 23 H 1.09005 * 109.47723 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46517 * 55.00338 * 4 2 1 25 25 H 1.08997 * 109.47540 * 295.00487 * 4 2 1 26 26 H 1.08001 * 119.99159 * 0.02562 * 6 5 4 27 27 H 1.08007 * 119.98628 * 179.97438 * 7 6 5 28 28 H 1.07999 * 119.99339 * 180.02562 * 8 7 6 29 29 H 1.08002 * 120.00237 * 180.02562 * 9 8 7 30 30 H 0.96995 * 120.00238 * 94.99964 * 12 2 1 31 31 H 0.97001 * 120.00193 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 6 4.3280 -1.6753 -0.9018 7 6 5.7055 -1.5778 -0.9595 8 6 6.2981 -0.4201 -1.4288 9 6 5.5133 0.6405 -1.8401 10 6 4.1342 0.5457 -1.7767 11 17 3.1479 1.8806 -2.2856 12 7 2.0183 -0.6907 1.1962 13 6 2.1491 -0.0075 2.3757 14 1 1.8919 1.0403 2.4244 15 6 2.6113 -0.6620 3.5093 16 7 2.9242 -1.9391 3.4502 17 14 2.7891 0.2697 5.1185 18 1 1.5210 0.1785 5.8860 19 1 3.8933 -0.3237 5.9147 20 1 3.0942 1.6949 4.8342 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3635 -1.0277 0.0005 24 1 1.6054 -0.2618 -2.1369 25 1 1.7516 -1.7716 -1.2056 26 1 3.8656 -2.5801 -0.5357 27 1 6.3192 -2.4063 -0.6380 28 1 7.3745 -0.3446 -1.4740 29 1 5.9763 1.5445 -2.2071 30 1 2.2489 -1.6318 1.1526 31 1 3.2475 -2.3964 4.2422 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170248270.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:43 Heat of formation + Delta-G solvation = 16.009802 kcal Electronic energy + Delta-G solvation = -14912.953208 eV Core-core repulsion = 12412.895073 eV Total energy + Delta-G solvation = -2500.058134 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.13730 -36.08413 -35.89573 -32.65325 -30.89427 -30.33365 -28.50734 -25.97929 -23.63071 -22.35079 -21.31464 -19.69086 -17.17844 -16.65625 -15.39320 -15.09725 -14.53661 -13.71207 -13.67265 -13.53464 -13.28419 -12.76597 -12.10013 -11.99085 -11.63191 -11.46484 -11.19727 -11.05120 -10.88103 -10.78158 -10.62910 -10.25210 -10.18739 -9.93973 -9.58948 -8.84849 -8.47709 -8.21308 -6.87796 -5.70369 -2.97074 1.54655 1.67318 2.49263 3.46708 3.52316 3.53532 4.01752 4.64984 5.07552 5.11536 5.29380 5.54525 5.61179 5.67188 5.80964 5.82378 5.94241 6.12234 6.21957 6.31118 6.38924 6.47000 6.58039 6.68004 6.74541 6.86314 6.98510 7.15303 7.20735 7.77152 8.48652 9.60061 10.18001 10.53546 11.52605 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.008726 C = 0.007610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.120489 B = 3208.124817 C = 3678.372018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.176 3.824 3 H 0.053 0.947 4 C -0.092 4.092 5 C -0.045 4.045 6 C -0.085 4.085 7 C -0.112 4.112 8 C -0.122 4.122 9 C -0.116 4.116 10 C -0.034 4.034 11 Cl -0.079 7.079 12 N -0.720 5.720 13 C -0.229 4.229 14 H 0.068 0.932 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.902 3.098 18 H -0.291 1.291 19 H -0.293 1.293 20 H -0.283 1.283 21 H 0.053 0.947 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.130 0.870 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.382 0.618 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 2.487 -12.581 13.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.066 3.934 3 H 0.071 0.929 4 C -0.130 4.130 5 C -0.045 4.045 6 C -0.104 4.104 7 C -0.130 4.130 8 C -0.141 4.141 9 C -0.135 4.135 10 C -0.060 4.060 11 Cl -0.050 7.050 12 N -0.362 5.362 13 C -0.361 4.361 14 H 0.086 0.914 15 C -0.210 4.210 16 N -0.583 5.583 17 Si 0.733 3.267 18 H -0.219 1.219 19 H -0.219 1.219 20 H -0.209 1.209 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.148 0.852 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.216 0.784 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.080 2.741 -12.487 13.151 hybrid contribution 0.135 0.307 1.088 1.139 sum 3.216 3.048 -11.399 12.230 Atomic orbital electron populations 1.22429 0.99197 1.00781 0.99974 1.20213 0.91594 0.95817 0.85742 0.92945 1.21034 0.90061 1.02124 0.99788 1.19699 0.96756 0.91956 0.96134 1.21022 0.93342 0.98621 0.97383 1.21179 0.95050 0.97982 0.98769 1.20954 0.99430 0.93378 1.00310 1.20889 0.91499 0.99478 1.01606 1.20725 0.91360 0.89579 1.04344 1.98327 1.70866 1.46344 1.89510 1.42391 1.78072 1.10511 1.05235 1.19214 1.35789 0.93762 0.87288 0.91425 1.24663 1.02514 0.95967 0.97825 1.69646 1.51452 1.08592 1.28615 0.86260 0.77210 0.78898 0.84300 1.21893 1.21903 1.20874 0.92760 0.94507 0.93534 0.90800 0.91010 0.85213 0.85904 0.85877 0.85726 0.78438 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.49 37.15 0.35 -2.68 16 2 C 0.18 3.57 2.82 -67.93 -0.19 3.38 16 3 H 0.05 1.13 7.20 -51.93 -0.37 0.75 16 4 C -0.09 -1.57 4.34 -27.88 -0.12 -1.69 16 5 C -0.04 -0.78 4.87 -104.59 -0.51 -1.29 16 6 C -0.09 -1.46 9.67 -39.59 -0.38 -1.85 16 7 C -0.11 -1.71 10.05 -39.58 -0.40 -2.11 16 8 C -0.12 -1.74 10.05 -39.59 -0.40 -2.14 16 9 C -0.12 -1.73 9.83 -39.55 -0.39 -2.12 16 10 C -0.03 -0.56 6.31 -39.50 -0.25 -0.81 16 11 Cl -0.08 -1.21 26.63 -51.86 -1.38 -2.59 16 12 N -0.72 -17.92 4.83 -53.42 -0.26 -18.17 16 13 C -0.23 -6.40 9.93 -15.06 -0.15 -6.55 16 14 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 15 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 16 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 17 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 19 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.07 1.13 7.37 -51.93 -0.38 0.75 16 25 H 0.07 1.18 8.00 -51.93 -0.42 0.76 16 26 H 0.13 2.19 8.04 -52.49 -0.42 1.77 16 27 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 29 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.38 9.95 7.80 -40.82 -0.32 9.64 16 31 H 0.25 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 281.38 15.07 4.24 4.24 Total: -1.00 -30.06 281.38 -8.22 -38.28 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -3.99 Total: 6.13 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -2.53 Total: -18.35 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.47 Total: -45.46 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.38 Total: -2.59 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.06 -8.22 -38.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170248270.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.294 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds