Wall clock time and date at job start Sun Mar 29 2020 22:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47664 * 2 1 4 4 C 1.53002 * 109.47253 * 239.99487 * 2 1 3 5 5 C 1.50699 * 109.47263 * 174.99999 * 4 2 1 6 6 C 1.38234 * 120.00639 * 100.00442 * 5 4 2 7 7 C 1.38216 * 120.01494 * 180.02562 * 6 5 4 8 8 C 1.38265 * 120.02667 * 359.96105 * 7 6 5 9 9 C 1.38195 * 120.01144 * 0.02562 * 8 7 6 10 10 C 1.38328 * 120.00778 * 280.27819 * 5 4 2 11 11 Cl 1.73604 * 120.01692 * 0.02562 * 10 5 4 12 12 N 1.46506 * 109.46992 * 120.00317 * 2 1 3 13 13 C 1.36938 * 119.99486 * 274.99538 * 12 2 1 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 12 2 15 15 C 1.38814 * 119.99885 * 179.97438 * 13 12 2 16 16 N 1.31617 * 119.99785 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00208 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47246 * 89.99969 * 17 15 13 19 19 H 1.48505 * 109.47350 * 210.00346 * 17 15 13 20 20 H 1.48501 * 109.47011 * 329.99974 * 17 15 13 21 21 H 1.09005 * 109.46989 * 300.00117 * 1 2 3 22 22 H 1.08999 * 109.46969 * 60.00102 * 1 2 3 23 23 H 1.09005 * 109.47723 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46517 * 55.00338 * 4 2 1 25 25 H 1.08997 * 109.47540 * 295.00487 * 4 2 1 26 26 H 1.08001 * 119.99159 * 0.02562 * 6 5 4 27 27 H 1.08007 * 119.98628 * 179.97438 * 7 6 5 28 28 H 1.07999 * 119.99339 * 180.02562 * 8 7 6 29 29 H 1.08002 * 120.00237 * 180.02562 * 9 8 7 30 30 H 0.96995 * 120.00238 * 94.99964 * 12 2 1 31 31 H 0.97001 * 120.00193 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 6 4.3280 -1.6753 -0.9018 7 6 5.7055 -1.5778 -0.9595 8 6 6.2981 -0.4201 -1.4288 9 6 5.5133 0.6405 -1.8401 10 6 4.1342 0.5457 -1.7767 11 17 3.1479 1.8806 -2.2856 12 7 2.0183 -0.6907 1.1962 13 6 2.1491 -0.0075 2.3757 14 1 1.8919 1.0403 2.4244 15 6 2.6113 -0.6620 3.5093 16 7 2.9242 -1.9391 3.4502 17 14 2.7891 0.2697 5.1185 18 1 1.5210 0.1785 5.8860 19 1 3.8933 -0.3237 5.9147 20 1 3.0942 1.6949 4.8342 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3635 -1.0277 0.0005 24 1 1.6054 -0.2618 -2.1369 25 1 1.7516 -1.7716 -1.2056 26 1 3.8656 -2.5801 -0.5357 27 1 6.3192 -2.4063 -0.6380 28 1 7.3745 -0.3446 -1.4740 29 1 5.9763 1.5445 -2.2071 30 1 2.2489 -1.6318 1.1526 31 1 3.2475 -2.3964 4.2422 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170248270.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:43 Heat of formation + Delta-G solvation = -0.330682 kcal Electronic energy + Delta-G solvation = -14913.661784 eV Core-core repulsion = 12412.895073 eV Total energy + Delta-G solvation = -2500.766711 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.37618 -37.55107 -37.28953 -34.52323 -32.43465 -31.55197 -30.33591 -27.34255 -25.67813 -23.57105 -22.64181 -21.27041 -19.22140 -17.86844 -16.93333 -16.38619 -16.20858 -15.45934 -15.38599 -14.82959 -14.56504 -14.31053 -13.64364 -13.56924 -13.09500 -12.89953 -12.80704 -12.59075 -12.42974 -12.27280 -12.19353 -12.05172 -11.66952 -11.55362 -11.48525 -10.89868 -9.70243 -9.45436 -8.92398 -7.88486 -5.13871 0.32682 0.46066 1.27046 1.46801 1.47174 1.55277 2.58822 2.79801 3.44846 3.84871 3.87119 4.03780 4.16651 4.31842 4.48808 4.54081 4.61090 4.71181 4.81702 4.93694 5.01928 5.05515 5.16088 5.33977 5.36908 5.52803 5.55397 5.61703 5.67352 6.00280 6.34090 7.40882 8.17848 8.42717 9.34699 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.008726 C = 0.007610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.120489 B = 3208.124817 C = 3678.372018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.041 0.959 4 C -0.082 4.082 5 C -0.066 4.066 6 C -0.107 4.107 7 C -0.121 4.121 8 C -0.118 4.118 9 C -0.120 4.120 10 C -0.049 4.049 11 Cl -0.073 7.073 12 N -0.728 5.728 13 C -0.228 4.228 14 H 0.066 0.934 15 C -0.071 4.071 16 N -0.964 5.964 17 Si 0.960 3.040 18 H -0.290 1.290 19 H -0.296 1.296 20 H -0.275 1.275 21 H 0.035 0.965 22 H 0.069 0.931 23 H 0.046 0.954 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.141 0.859 28 H 0.157 0.843 29 H 0.149 0.851 30 H 0.373 0.627 31 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.748 3.475 -13.352 14.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.065 3.935 3 H 0.059 0.941 4 C -0.120 4.120 5 C -0.067 4.067 6 C -0.126 4.126 7 C -0.139 4.139 8 C -0.136 4.136 9 C -0.138 4.138 10 C -0.075 4.075 11 Cl -0.044 7.044 12 N -0.368 5.368 13 C -0.360 4.360 14 H 0.084 0.916 15 C -0.264 4.264 16 N -0.615 5.615 17 Si 0.791 3.209 18 H -0.217 1.217 19 H -0.223 1.223 20 H -0.200 1.200 21 H 0.054 0.946 22 H 0.087 0.913 23 H 0.065 0.935 24 H 0.112 0.888 25 H 0.092 0.908 26 H 0.138 0.862 27 H 0.159 0.841 28 H 0.175 0.825 29 H 0.166 0.834 30 H 0.206 0.794 31 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.656 3.760 -13.293 14.290 hybrid contribution -0.040 0.039 1.239 1.240 sum 3.616 3.799 -12.054 13.146 Atomic orbital electron populations 1.22305 0.97630 1.01042 1.00653 1.20376 0.92555 0.95112 0.85490 0.94084 1.20910 0.90395 1.01955 0.98750 1.19783 0.96808 0.92716 0.97419 1.21131 0.94498 0.98587 0.98367 1.21492 0.94570 0.99248 0.98551 1.21371 1.01176 0.92388 0.98646 1.21266 0.90989 1.00604 1.00951 1.20935 0.92317 0.89585 1.04711 1.98321 1.70844 1.45827 1.89410 1.42518 1.78280 1.10170 1.05876 1.19492 1.34303 0.93786 0.88453 0.91601 1.25349 1.03425 0.96844 1.00757 1.69785 1.52949 1.09831 1.28977 0.85325 0.76814 0.78051 0.80742 1.21716 1.22286 1.20024 0.94601 0.91257 0.93481 0.88842 0.90812 0.86170 0.84113 0.82495 0.83358 0.79434 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.61 9.49 71.98 0.68 -4.93 16 2 C 0.17 6.91 2.82 44.99 0.13 7.03 16 3 H 0.04 1.74 7.20 -2.39 -0.02 1.72 16 4 C -0.08 -2.74 4.34 29.85 0.13 -2.61 16 5 C -0.07 -2.28 4.87 -19.84 -0.10 -2.37 16 6 C -0.11 -3.67 9.67 22.26 0.22 -3.46 16 7 C -0.12 -3.54 10.05 22.27 0.22 -3.32 16 8 C -0.12 -3.05 10.05 22.27 0.22 -2.83 16 9 C -0.12 -3.29 9.83 22.29 0.22 -3.07 16 10 C -0.05 -1.55 6.31 22.32 0.14 -1.41 16 11 Cl -0.07 -2.11 26.63 -2.72 -0.07 -2.18 16 12 N -0.73 -36.36 4.83 -322.93 -1.56 -37.92 16 13 C -0.23 -12.76 9.93 84.03 0.83 -11.93 16 14 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 15 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 16 N -0.96 -58.48 13.06 21.65 0.28 -58.20 16 17 Si 0.96 46.91 29.55 68.60 2.03 48.93 16 18 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 19 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 20 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 21 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 22 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.09 2.70 7.37 -2.39 -0.02 2.68 16 25 H 0.07 2.40 8.00 -2.39 -0.02 2.38 16 26 H 0.12 4.19 8.04 -2.91 -0.02 4.17 16 27 H 0.14 3.50 8.06 -2.91 -0.02 3.47 16 28 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 29 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.37 19.79 7.80 -92.71 -0.72 19.06 16 31 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -63.22 281.38 4.24 -58.98 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.40 Total: 22.93 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 3.17 Total: -32.55 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -1.28 Total: -96.11 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -0.07 Total: -2.18 kcal Total: -63.22 4.24 -58.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170248270.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.646 kcal (2) G-P(sol) polarization free energy of solvation -63.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds