Wall clock time and date at job start Sun Mar 29 2020 22:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86799 * 119.99713 * 2 1 4 4 H 1.48497 * 109.47340 * 274.98461 * 3 2 1 5 5 H 1.48508 * 109.47113 * 34.98872 * 3 2 1 6 6 H 1.48503 * 109.47029 * 154.98515 * 3 2 1 7 7 C 1.40116 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99942 * 186.14159 * 7 2 1 9 9 C 1.40817 * 120.00173 * 6.14333 * 7 2 1 10 10 N 1.33914 * 120.27544 * 353.19931 * 9 7 2 11 11 C 1.31715 * 119.89353 * 180.02562 * 10 9 7 12 12 C 1.38969 * 120.47843 * 0.02562 * 11 10 9 13 13 N 1.32247 * 120.56733 * 359.97438 * 12 11 10 14 14 C 1.32616 * 120.08595 * 359.97438 * 13 12 11 15 15 N 1.37933 * 120.23732 * 179.97438 * 14 13 12 16 16 C 1.46500 * 119.99586 * 359.97438 * 15 14 13 17 17 C 1.53008 * 109.46837 * 180.02562 * 16 15 14 18 18 C 1.53004 * 109.46816 * 180.02562 * 17 16 15 19 19 S 1.81401 * 109.46985 * 180.02562 * 18 17 16 20 20 H 0.96996 * 120.00286 * 359.97438 * 1 2 3 21 21 H 1.08007 * 119.75965 * 180.28159 * 11 10 9 22 22 H 1.08001 * 119.71297 * 180.02562 * 12 11 10 23 23 H 0.96996 * 120.00415 * 180.02562 * 15 14 13 24 24 H 1.09002 * 109.47426 * 299.99966 * 16 15 14 25 25 H 1.09006 * 109.47521 * 60.00469 * 16 15 14 26 26 H 1.08999 * 109.47136 * 299.99606 * 17 16 15 27 27 H 1.08995 * 109.47281 * 60.00034 * 17 16 15 28 28 H 1.09002 * 109.47068 * 299.99491 * 18 17 16 29 29 H 1.08995 * 109.47536 * 59.99739 * 18 17 16 30 30 H 1.34498 * 103.00223 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3834 2.1073 -1.3947 5 1 1.4953 2.6200 0.8029 6 1 3.5875 1.4121 0.5920 7 6 2.0079 -1.2134 -0.0005 8 1 3.0833 -1.2161 0.0995 9 6 1.3100 -2.4294 -0.1316 10 7 -0.0290 -2.4440 -0.1195 11 6 -0.6742 -3.5857 -0.2421 12 6 0.0246 -4.7786 -0.3838 13 7 1.3469 -4.7857 -0.3982 14 6 2.0192 -3.6490 -0.2775 15 7 3.3985 -3.6529 -0.2916 16 6 4.1259 -4.9159 -0.4398 17 6 5.6312 -4.6424 -0.4235 18 6 6.3909 -5.9614 -0.5789 19 16 8.1756 -5.6372 -0.5589 20 1 -0.4850 0.8400 0.0004 21 1 -1.7542 -3.5945 -0.2366 22 1 -0.5170 -5.7076 -0.4839 23 1 3.8868 -2.8195 -0.2026 24 1 3.8691 -5.5820 0.3840 25 1 3.8516 -5.3845 -1.3850 26 1 5.8884 -3.9762 -1.2470 27 1 5.9052 -4.1741 0.5218 28 1 6.1338 -6.6279 0.2443 29 1 6.1168 -6.4293 -1.5244 30 1 8.7076 -6.8643 -0.7013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170999430.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:26 Heat of formation + Delta-G solvation = 41.107766 kcal Electronic energy + Delta-G solvation = -14438.686066 eV Core-core repulsion = 11974.052718 eV Total energy + Delta-G solvation = -2464.633348 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.95676 -36.02233 -33.94982 -32.95250 -31.40409 -29.07755 -26.06276 -25.45769 -22.38707 -21.41137 -21.03428 -17.59689 -17.40590 -16.58283 -15.82347 -15.54572 -15.04967 -14.42594 -14.07451 -13.54640 -13.44541 -12.96794 -12.56951 -12.19896 -11.87269 -11.46192 -11.33568 -11.24862 -11.00054 -10.61845 -10.44740 -10.20335 -9.80441 -9.38316 -9.35046 -8.55670 -8.21049 -7.33508 -6.78252 -6.41235 -4.41240 1.46719 2.59873 2.66929 3.06646 3.08937 3.09468 3.26311 3.90292 4.23346 4.74622 4.80532 5.00733 5.26369 5.52628 5.56610 5.86794 5.92011 6.01883 6.18061 6.31833 6.35567 6.51242 6.76772 7.01702 7.08827 7.67159 7.99147 8.12444 8.41066 8.63910 8.88141 9.47193 10.01050 10.25374 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.021114 B = 0.006357 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.791280 B = 4403.501030 C = 5701.585684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.424 4.424 8 H 0.084 0.916 9 C 0.194 3.806 10 N -0.450 5.450 11 C 0.029 3.971 12 C -0.086 4.086 13 N -0.501 5.501 14 C 0.262 3.738 15 N -0.724 5.724 16 C 0.151 3.849 17 C -0.118 4.118 18 C -0.058 4.058 19 S -0.253 6.253 20 H 0.274 0.726 21 H 0.124 0.876 22 H 0.122 0.878 23 H 0.404 0.596 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.187 -5.166 -0.733 10.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.157 4.157 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.458 4.458 8 H 0.102 0.898 9 C 0.060 3.940 10 N -0.168 5.168 11 C -0.134 4.134 12 C -0.240 4.240 13 N -0.222 5.222 14 C 0.015 3.985 15 N -0.367 5.367 16 C 0.023 3.977 17 C -0.157 4.157 18 C -0.208 4.208 19 S -0.102 6.102 20 H 0.085 0.915 21 H 0.141 0.859 22 H 0.140 0.860 23 H 0.241 0.759 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 9.673 -4.914 -0.716 10.873 hybrid contribution -0.108 -0.364 -0.146 0.407 sum 9.565 -5.278 -0.862 10.959 Atomic orbital electron populations 1.70099 1.07234 1.27952 1.28360 1.26014 0.94892 1.00975 0.93805 0.86311 0.80525 0.80916 0.79110 1.19458 1.20095 1.18393 1.19247 0.94288 0.89448 1.42808 0.89842 1.19048 0.89309 0.91218 0.94400 1.69491 1.06520 1.24309 1.16434 1.23148 0.99663 0.90387 1.00156 1.22257 0.89592 0.97755 1.14366 1.67297 1.09140 1.28046 1.17763 1.19289 0.85002 0.91229 1.02988 1.43604 1.01966 1.07563 1.83524 1.20838 0.88001 0.87979 1.00843 1.21554 0.94765 0.95298 1.04059 1.23041 0.90105 1.02185 1.05446 1.87572 1.08577 1.15972 1.98086 0.91468 0.85872 0.86035 0.75909 0.93110 0.93092 0.90254 0.90262 0.89569 0.89559 0.95314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.69 11.51 55.56 0.64 -18.05 16 2 C 0.07 1.69 5.49 -17.32 -0.10 1.60 16 3 Si 0.91 17.90 29.57 -169.99 -5.03 12.87 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.42 -10.73 8.86 -37.90 -0.34 -11.07 16 8 H 0.08 1.90 6.17 -52.48 -0.32 1.57 16 9 C 0.19 5.21 6.56 -84.61 -0.55 4.66 16 10 N -0.45 -12.45 8.07 -10.79 -0.09 -12.54 16 11 C 0.03 0.72 11.21 -17.33 -0.19 0.53 16 12 C -0.09 -2.02 11.22 -17.10 -0.19 -2.21 16 13 N -0.50 -12.19 9.71 -11.67 -0.11 -12.30 16 14 C 0.26 6.38 7.51 -154.83 -1.16 5.22 16 15 N -0.72 -14.35 5.60 -59.89 -0.34 -14.69 16 16 C 0.15 2.39 5.69 -4.04 -0.02 2.37 16 17 C -0.12 -1.43 5.34 -26.73 -0.14 -1.57 16 18 C -0.06 -0.60 6.30 37.16 0.23 -0.37 16 19 S -0.25 -2.76 25.88 -107.50 -2.78 -5.55 16 20 H 0.27 6.49 8.29 -40.82 -0.34 6.15 16 21 H 0.12 2.67 8.06 -52.48 -0.42 2.25 16 22 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 23 H 0.40 7.51 6.47 -40.82 -0.26 7.24 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.09 0.82 8.14 -51.92 -0.42 0.39 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.80 9.07 97.61 0.89 1.69 16 LS Contribution 274.81 15.07 4.14 4.14 Total: -1.00 -29.48 274.81 -8.25 -37.72 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -2.22 Total: 9.22 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.47 Total: -0.84 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.10 Total: -57.57 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.78 Total: -5.55 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.48 -8.25 -37.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170999430.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.833 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds