Wall clock time and date at job start Sun Mar 29 2020 22:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86799 * 119.99713 * 2 1 4 4 H 1.48497 * 109.47340 * 274.98461 * 3 2 1 5 5 H 1.48508 * 109.47113 * 34.98872 * 3 2 1 6 6 H 1.48503 * 109.47029 * 154.98515 * 3 2 1 7 7 C 1.40116 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99942 * 186.14159 * 7 2 1 9 9 C 1.40817 * 120.00173 * 6.14333 * 7 2 1 10 10 N 1.33914 * 120.27544 * 353.19931 * 9 7 2 11 11 C 1.31715 * 119.89353 * 180.02562 * 10 9 7 12 12 C 1.38969 * 120.47843 * 0.02562 * 11 10 9 13 13 N 1.32247 * 120.56733 * 359.97438 * 12 11 10 14 14 C 1.32616 * 120.08595 * 359.97438 * 13 12 11 15 15 N 1.37933 * 120.23732 * 179.97438 * 14 13 12 16 16 C 1.46500 * 119.99586 * 359.97438 * 15 14 13 17 17 C 1.53008 * 109.46837 * 180.02562 * 16 15 14 18 18 C 1.53004 * 109.46816 * 180.02562 * 17 16 15 19 19 S 1.81401 * 109.46985 * 180.02562 * 18 17 16 20 20 H 0.96996 * 120.00286 * 359.97438 * 1 2 3 21 21 H 1.08007 * 119.75965 * 180.28159 * 11 10 9 22 22 H 1.08001 * 119.71297 * 180.02562 * 12 11 10 23 23 H 0.96996 * 120.00415 * 180.02562 * 15 14 13 24 24 H 1.09002 * 109.47426 * 299.99966 * 16 15 14 25 25 H 1.09006 * 109.47521 * 60.00469 * 16 15 14 26 26 H 1.08999 * 109.47136 * 299.99606 * 17 16 15 27 27 H 1.08995 * 109.47281 * 60.00034 * 17 16 15 28 28 H 1.09002 * 109.47068 * 299.99491 * 18 17 16 29 29 H 1.08995 * 109.47536 * 59.99739 * 18 17 16 30 30 H 1.34498 * 103.00223 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3834 2.1073 -1.3947 5 1 1.4953 2.6200 0.8029 6 1 3.5875 1.4121 0.5920 7 6 2.0079 -1.2134 -0.0005 8 1 3.0833 -1.2161 0.0995 9 6 1.3100 -2.4294 -0.1316 10 7 -0.0290 -2.4440 -0.1195 11 6 -0.6742 -3.5857 -0.2421 12 6 0.0246 -4.7786 -0.3838 13 7 1.3469 -4.7857 -0.3982 14 6 2.0192 -3.6490 -0.2775 15 7 3.3985 -3.6529 -0.2916 16 6 4.1259 -4.9159 -0.4398 17 6 5.6312 -4.6424 -0.4235 18 6 6.3909 -5.9614 -0.5789 19 16 8.1756 -5.6372 -0.5589 20 1 -0.4850 0.8400 0.0004 21 1 -1.7542 -3.5945 -0.2366 22 1 -0.5170 -5.7076 -0.4839 23 1 3.8868 -2.8195 -0.2026 24 1 3.8691 -5.5820 0.3840 25 1 3.8516 -5.3845 -1.3850 26 1 5.8884 -3.9762 -1.2470 27 1 5.9052 -4.1741 0.5218 28 1 6.1338 -6.6279 0.2443 29 1 6.1168 -6.4293 -1.5244 30 1 8.7076 -6.8643 -0.7013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170999430.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:25 Heat of formation + Delta-G solvation = 22.485667 kcal Electronic energy + Delta-G solvation = -14439.493580 eV Core-core repulsion = 11974.052718 eV Total energy + Delta-G solvation = -2465.440862 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.80118 -37.44306 -35.80075 -34.34983 -33.23887 -30.74252 -27.85549 -26.86833 -24.02091 -23.11655 -22.46559 -19.46332 -18.42302 -18.19250 -17.48993 -16.78273 -16.60278 -15.81385 -15.68593 -15.12447 -14.71883 -14.62103 -13.96486 -13.87968 -13.17310 -13.04090 -12.94106 -12.50994 -12.22486 -12.14555 -11.89196 -11.58129 -11.32507 -11.25186 -11.11367 -10.38076 -9.21763 -9.05203 -8.56335 -8.25060 -6.30473 0.63983 0.82855 1.28195 1.46346 1.58462 1.60512 1.81008 2.25487 2.74187 2.90496 3.91899 3.94868 3.97309 4.15888 4.29767 4.36647 4.53032 4.58499 4.63697 4.81119 4.96921 5.15863 5.18044 5.22961 5.28380 5.84171 6.16124 6.33287 6.72913 6.82770 7.03955 7.64726 8.12440 8.46021 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.021114 B = 0.006357 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.791280 B = 4403.501030 C = 5701.585684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.022 3.978 3 Si 0.988 3.012 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.246 1.246 7 C -0.445 4.445 8 H 0.102 0.898 9 C 0.158 3.842 10 N -0.488 5.488 11 C 0.006 3.994 12 C -0.084 4.084 13 N -0.513 5.513 14 C 0.258 3.742 15 N -0.717 5.717 16 C 0.153 3.847 17 C -0.105 4.105 18 C -0.051 4.051 19 S -0.273 6.273 20 H 0.279 0.721 21 H 0.144 0.856 22 H 0.154 0.846 23 H 0.408 0.592 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.913 -5.249 -0.812 12.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.200 4.200 3 Si 0.808 3.192 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.169 1.169 7 C -0.480 4.480 8 H 0.120 0.880 9 C 0.023 3.977 10 N -0.207 5.207 11 C -0.156 4.156 12 C -0.237 4.237 13 N -0.235 5.235 14 C 0.010 3.990 15 N -0.359 5.359 16 C 0.027 3.973 17 C -0.143 4.143 18 C -0.201 4.201 19 S -0.122 6.122 20 H 0.090 0.910 21 H 0.161 0.839 22 H 0.171 0.829 23 H 0.246 0.754 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.422 -5.037 -0.797 12.509 hybrid contribution -0.638 -0.459 -0.130 0.796 sum 10.785 -5.496 -0.926 12.140 Atomic orbital electron populations 1.70216 1.09158 1.29259 1.29398 1.27008 0.95640 1.04619 0.92699 0.85104 0.79405 0.75608 0.79112 1.19135 1.19818 1.16903 1.19696 0.95327 0.89787 1.43153 0.88028 1.19538 0.89677 0.92802 0.95647 1.69414 1.07499 1.25946 1.17830 1.23523 1.00801 0.90348 1.00888 1.22751 0.89678 0.98667 1.12623 1.67423 1.09511 1.27828 1.18771 1.19502 0.86793 0.90719 1.01941 1.43738 1.00574 1.09338 1.82203 1.20946 0.89990 0.86105 1.00276 1.21386 0.92127 0.96495 1.04335 1.22955 0.89422 1.01146 1.06528 1.87645 1.09079 1.17352 1.98144 0.91013 0.83893 0.82874 0.75384 0.93559 0.93558 0.90016 0.90019 0.88527 0.88521 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -40.33 11.51 21.86 0.25 -40.07 16 2 C 0.02 1.09 5.49 85.31 0.47 1.55 16 3 Si 0.99 36.25 29.57 68.60 2.03 38.27 16 4 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 5 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 6 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16 7 C -0.45 -22.64 8.86 23.36 0.21 -22.43 16 8 H 0.10 4.55 6.17 -2.91 -0.02 4.53 16 9 C 0.16 8.59 6.56 40.35 0.26 8.86 16 10 N -0.49 -27.63 8.07 -188.05 -1.52 -29.15 16 11 C 0.01 0.29 11.21 84.89 0.95 1.25 16 12 C -0.08 -3.90 11.22 84.81 0.95 -2.94 16 13 N -0.51 -24.70 9.71 -190.82 -1.85 -26.55 16 14 C 0.26 12.58 7.51 134.03 1.01 13.59 16 15 N -0.72 -27.81 5.60 -343.38 -1.92 -29.73 16 16 C 0.15 4.64 5.69 86.38 0.49 5.13 16 17 C -0.10 -2.32 5.34 30.60 0.16 -2.16 16 18 C -0.05 -0.93 6.30 71.98 0.45 -0.48 16 19 S -0.27 -5.35 25.88 -56.49 -1.46 -6.82 16 20 H 0.28 13.46 8.29 -92.71 -0.77 12.69 16 21 H 0.14 6.24 8.06 -2.91 -0.02 6.22 16 22 H 0.15 5.96 8.06 -2.91 -0.02 5.94 16 23 H 0.41 14.76 6.47 -92.71 -0.60 14.16 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.05 1.46 8.14 -2.38 -0.02 1.45 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.10 1.68 9.07 73.35 0.67 2.34 16 Total: -1.00 -63.57 274.81 1.72 -61.86 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 1.24 Total: 29.82 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 4.96 Total: 2.37 kcal Atomic # 7 Polarization: -120.46 SS G_CDS: -5.04 Total: -125.51 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 2.03 Total: 38.27 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -1.46 Total: -6.82 kcal Total: -63.57 1.72 -61.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170999430.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.341 kcal (2) G-P(sol) polarization free energy of solvation -63.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds