Wall clock time and date at job start Sun Mar 29 2020 22:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38237 * 120.00563 * 2 1 4 4 C 1.38217 * 120.01079 * 180.02562 * 3 2 1 5 5 C 1.38265 * 120.02775 * 359.97438 * 4 3 2 6 6 C 1.38190 * 120.01123 * 359.76438 * 5 4 3 7 7 C 1.50708 * 120.00656 * 180.25314 * 6 5 4 8 8 N 1.46502 * 109.47183 * 260.25481 * 7 6 5 9 9 C 1.46497 * 120.00064 * 270.00141 * 8 7 6 10 10 C 1.36934 * 119.99486 * 90.00191 * 8 7 6 11 11 H 1.07996 * 120.00336 * 22.35656 * 10 8 7 12 12 C 1.38813 * 119.99842 * 202.35628 * 10 8 7 13 13 N 1.31623 * 119.99895 * 11.77968 * 12 10 8 14 14 Si 1.86797 * 120.00158 * 191.78036 * 12 10 8 15 15 H 1.48497 * 109.47248 * 90.00121 * 14 12 10 16 16 H 1.48504 * 109.46858 * 209.99692 * 14 12 10 17 17 H 1.48496 * 109.47184 * 329.99914 * 14 12 10 18 18 C 1.38325 * 120.00529 * 180.02562 * 2 1 3 19 19 Cl 1.73603 * 120.01532 * 359.97438 * 18 2 1 20 20 H 1.09000 * 109.46779 * 269.97734 * 1 2 3 21 21 H 1.08998 * 109.47028 * 29.97103 * 1 2 3 22 22 H 1.08992 * 109.47083 * 149.97599 * 1 2 3 23 23 H 1.07996 * 119.99117 * 0.04707 * 3 2 1 24 24 H 1.08001 * 119.98692 * 180.02562 * 4 3 2 25 25 H 1.07998 * 119.99508 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.46747 * 20.25744 * 7 6 5 27 27 H 1.09003 * 109.46641 * 140.25443 * 7 6 5 28 28 H 1.08995 * 109.47190 * 92.77301 * 9 8 7 29 29 H 1.09001 * 109.46901 * 212.78067 * 9 8 7 30 30 H 1.09000 * 109.47272 * 332.77164 * 9 8 7 31 31 H 0.97004 * 120.00312 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1971 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2726 0.0002 -0.0005 6 6 3.5825 -1.1971 0.0049 7 6 4.3370 -2.5017 0.0107 8 7 4.3789 -3.0476 -1.3482 9 6 3.3174 -3.9455 -1.8099 10 6 5.4103 -2.7186 -2.1866 11 1 6.3498 -2.3764 -1.7785 12 6 5.2482 -2.8247 -3.5612 13 7 4.0491 -3.0144 -4.0697 14 14 6.7318 -2.6985 -4.6891 15 1 7.3078 -4.0505 -4.9026 16 1 6.3140 -2.1268 -5.9944 17 1 7.7530 -1.8180 -4.0671 18 6 2.1988 -1.1979 -0.0005 19 17 1.3313 -2.7016 -0.0005 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8897 -0.5142 23 1 1.6584 2.1323 0.0008 24 1 4.1203 2.1327 -0.0001 25 1 5.3525 0.0009 -0.0005 26 1 5.3534 -2.3320 0.3656 27 1 3.8348 -3.2088 0.6710 28 1 2.5420 -3.3647 -2.3094 29 1 3.7339 -4.6718 -2.5079 30 1 2.8865 -4.4682 -0.9559 31 1 3.9358 -3.0889 -5.0302 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236854360.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:26 Heat of formation + Delta-G solvation = 35.839095 kcal Electronic energy + Delta-G solvation = -15136.696839 eV Core-core repulsion = 12637.498567 eV Total energy + Delta-G solvation = -2499.198272 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.00742 -35.79774 -35.52868 -32.67000 -31.41224 -29.92845 -26.70830 -25.90808 -25.55791 -21.99038 -21.29082 -19.82035 -16.71993 -16.22475 -15.30087 -14.90980 -14.48583 -13.94179 -13.39061 -13.27021 -13.09930 -12.72226 -12.15017 -11.82714 -11.66809 -11.50056 -11.13505 -10.89787 -10.84345 -10.65479 -10.54967 -10.28182 -10.04808 -9.88573 -9.60799 -8.51661 -8.13066 -8.01644 -6.74510 -5.71504 -3.15284 1.74920 1.84592 2.82885 3.38659 3.44431 3.45916 4.15916 4.52507 5.17083 5.21771 5.39269 5.53975 5.60900 5.76228 5.81336 5.89910 5.98360 6.05270 6.23782 6.35991 6.53994 6.63827 6.83886 6.88576 6.93442 7.15743 7.39821 7.46977 7.78879 7.88554 8.40230 9.24334 9.86547 10.36484 11.32696 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.027228 B = 0.009030 C = 0.007947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.087805 B = 3099.859938 C = 3522.571829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.133 4.133 4 C -0.117 4.117 5 C -0.105 4.105 6 C -0.067 4.067 7 C 0.177 3.823 8 N -0.585 5.585 9 C 0.166 3.834 10 C -0.253 4.253 11 H 0.070 0.930 12 C 0.003 3.997 13 N -0.901 5.901 14 Si 0.905 3.095 15 H -0.287 1.287 16 H -0.291 1.291 17 H -0.279 1.279 18 C -0.024 4.024 19 Cl -0.074 7.074 20 H 0.067 0.933 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.119 0.881 24 H 0.117 0.883 25 H 0.123 0.877 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.000 1.000 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 5.306 8.997 11.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.152 4.152 4 C -0.135 4.135 5 C -0.124 4.124 6 C -0.072 4.072 7 C 0.050 3.950 8 N -0.305 5.305 9 C 0.022 3.978 10 C -0.383 4.383 11 H 0.088 0.912 12 C -0.196 4.196 13 N -0.545 5.545 14 Si 0.735 3.265 15 H -0.214 1.214 16 H -0.218 1.218 17 H -0.205 1.205 18 C -0.052 4.052 19 Cl -0.045 7.045 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.137 0.863 24 H 0.135 0.865 25 H 0.141 0.859 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.019 0.981 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.809 5.072 8.780 11.222 hybrid contribution 0.629 0.196 -0.977 1.178 sum -4.180 5.268 7.803 10.301 Atomic orbital electron populations 1.20787 0.91194 1.02995 1.01992 1.19639 0.96045 0.91769 1.01182 1.20716 0.94178 0.96395 1.03866 1.21089 0.94180 0.97926 1.00333 1.20916 0.99826 0.91256 1.00408 1.21107 0.92097 0.98931 0.95042 1.20042 0.96976 0.88981 0.89050 1.44111 1.26198 1.50134 1.10080 1.20934 0.90649 0.92180 0.94083 1.19250 0.90941 1.40888 0.87240 0.91249 1.25073 0.96321 1.01064 0.97104 1.70095 1.19829 1.53400 1.11183 0.86245 0.82131 0.77760 0.80347 1.21441 1.21764 1.20466 1.20570 0.92057 0.86051 1.06511 1.98313 1.76673 1.32698 1.96770 0.91460 0.91775 0.91051 0.86343 0.86470 0.85889 0.92655 0.92831 0.95054 0.93909 0.98128 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.62 36.01 0.35 -1.22 16 2 C -0.09 -1.46 5.88 -104.59 -0.62 -2.08 16 3 C -0.13 -2.09 9.70 -39.59 -0.38 -2.48 16 4 C -0.12 -1.90 10.05 -39.58 -0.40 -2.29 16 5 C -0.10 -1.94 9.67 -39.59 -0.38 -2.32 16 6 C -0.07 -1.36 5.47 -104.59 -0.57 -1.93 16 7 C 0.18 3.77 5.40 -5.19 -0.03 3.74 16 8 N -0.59 -14.95 2.91 -182.50 -0.53 -15.48 16 9 C 0.17 4.21 7.34 59.85 0.44 4.65 16 10 C -0.25 -6.99 9.67 -15.06 -0.15 -7.13 16 11 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 12 C 0.00 0.09 5.11 -17.43 -0.09 0.00 16 13 N -0.90 -26.67 10.62 55.49 0.59 -26.08 16 14 Si 0.91 22.04 29.57 -169.99 -5.03 17.01 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C -0.02 -0.48 6.31 -39.50 -0.25 -0.72 16 19 Cl -0.07 -1.37 22.45 -51.86 -1.16 -2.53 16 20 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 22 H 0.07 1.04 6.90 -51.93 -0.36 0.69 16 23 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 24 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 25 H 0.12 2.13 8.04 -52.49 -0.42 1.71 16 26 H 0.06 1.11 7.90 -51.93 -0.41 0.70 16 27 H 0.05 1.07 7.09 -51.93 -0.37 0.70 16 28 H 0.03 0.86 6.98 -51.93 -0.36 0.50 16 29 H 0.04 1.17 7.10 -51.93 -0.37 0.80 16 30 H 0.00 0.01 6.75 -51.93 -0.35 -0.34 16 31 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 270.32 15.07 4.07 4.07 Total: -1.00 -30.26 270.32 -8.01 -38.27 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -3.87 Total: -3.49 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -2.08 Total: -11.78 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.06 Total: -41.56 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.16 Total: -2.53 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.26 -8.01 -38.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236854360.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.114 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds