Wall clock time and date at job start Sun Mar 29 2020 22:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38237 * 120.00563 * 2 1 4 4 C 1.38217 * 120.01079 * 180.02562 * 3 2 1 5 5 C 1.38265 * 120.02775 * 359.97438 * 4 3 2 6 6 C 1.38190 * 120.01123 * 359.76438 * 5 4 3 7 7 C 1.50708 * 120.00656 * 180.25314 * 6 5 4 8 8 N 1.46502 * 109.47183 * 260.25481 * 7 6 5 9 9 C 1.46497 * 120.00064 * 270.00141 * 8 7 6 10 10 C 1.36934 * 119.99486 * 90.00191 * 8 7 6 11 11 H 1.07996 * 120.00336 * 22.35656 * 10 8 7 12 12 C 1.38813 * 119.99842 * 202.35628 * 10 8 7 13 13 N 1.31623 * 119.99895 * 11.77968 * 12 10 8 14 14 Si 1.86797 * 120.00158 * 191.78036 * 12 10 8 15 15 H 1.48497 * 109.47248 * 90.00121 * 14 12 10 16 16 H 1.48504 * 109.46858 * 209.99692 * 14 12 10 17 17 H 1.48496 * 109.47184 * 329.99914 * 14 12 10 18 18 C 1.38325 * 120.00529 * 180.02562 * 2 1 3 19 19 Cl 1.73603 * 120.01532 * 359.97438 * 18 2 1 20 20 H 1.09000 * 109.46779 * 269.97734 * 1 2 3 21 21 H 1.08998 * 109.47028 * 29.97103 * 1 2 3 22 22 H 1.08992 * 109.47083 * 149.97599 * 1 2 3 23 23 H 1.07996 * 119.99117 * 0.04707 * 3 2 1 24 24 H 1.08001 * 119.98692 * 180.02562 * 4 3 2 25 25 H 1.07998 * 119.99508 * 180.02562 * 5 4 3 26 26 H 1.08997 * 109.46747 * 20.25744 * 7 6 5 27 27 H 1.09003 * 109.46641 * 140.25443 * 7 6 5 28 28 H 1.08995 * 109.47190 * 92.77301 * 9 8 7 29 29 H 1.09001 * 109.46901 * 212.78067 * 9 8 7 30 30 H 1.09000 * 109.47272 * 332.77164 * 9 8 7 31 31 H 0.97004 * 120.00312 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1971 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.2726 0.0002 -0.0005 6 6 3.5825 -1.1971 0.0049 7 6 4.3370 -2.5017 0.0107 8 7 4.3789 -3.0476 -1.3482 9 6 3.3174 -3.9455 -1.8099 10 6 5.4103 -2.7186 -2.1866 11 1 6.3498 -2.3764 -1.7785 12 6 5.2482 -2.8247 -3.5612 13 7 4.0491 -3.0144 -4.0697 14 14 6.7318 -2.6985 -4.6891 15 1 7.3078 -4.0505 -4.9026 16 1 6.3140 -2.1268 -5.9944 17 1 7.7530 -1.8180 -4.0671 18 6 2.1988 -1.1979 -0.0005 19 17 1.3313 -2.7016 -0.0005 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8897 -0.5142 23 1 1.6584 2.1323 0.0008 24 1 4.1203 2.1327 -0.0001 25 1 5.3525 0.0009 -0.0005 26 1 5.3534 -2.3320 0.3656 27 1 3.8348 -3.2088 0.6710 28 1 2.5420 -3.3647 -2.3094 29 1 3.7339 -4.6718 -2.5079 30 1 2.8865 -4.4682 -0.9559 31 1 3.9358 -3.0889 -5.0302 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236854360.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:26 Heat of formation + Delta-G solvation = 19.578729 kcal Electronic energy + Delta-G solvation = -15137.401941 eV Core-core repulsion = 12637.498567 eV Total energy + Delta-G solvation = -2499.903374 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.38847 -37.42989 -37.18507 -34.23873 -33.03522 -31.57999 -28.21041 -27.67355 -27.30054 -23.73113 -22.74056 -21.35453 -18.72905 -17.61757 -16.92471 -16.62001 -15.92622 -15.63085 -15.14939 -14.80153 -14.60984 -14.17274 -13.60329 -13.27126 -13.17943 -13.05261 -12.91782 -12.71725 -12.45084 -12.19956 -12.12154 -12.06993 -11.86898 -11.79124 -11.21723 -10.60947 -9.52005 -9.40065 -8.77977 -7.81373 -5.28641 0.38585 0.48007 1.40336 1.45986 1.47608 1.55765 2.50649 2.80837 3.33891 3.87539 3.91031 3.96945 4.15651 4.43581 4.48864 4.63155 4.75976 4.81084 4.86339 4.89584 5.00241 5.07911 5.30106 5.34711 5.53333 5.56488 5.64455 5.71508 5.77947 6.08040 6.32573 7.15357 7.85749 8.31760 9.22202 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.027228 B = 0.009030 C = 0.007947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.087805 B = 3099.859938 C = 3522.571829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.125 4.125 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.094 4.094 7 C 0.178 3.822 8 N -0.602 5.602 9 C 0.188 3.812 10 C -0.258 4.258 11 H 0.075 0.925 12 C -0.053 4.053 13 N -0.937 5.937 14 Si 0.968 3.032 15 H -0.286 1.286 16 H -0.298 1.298 17 H -0.266 1.266 18 C -0.048 4.048 19 Cl -0.078 7.078 20 H 0.087 0.913 21 H 0.086 0.914 22 H 0.058 0.942 23 H 0.157 0.843 24 H 0.152 0.848 25 H 0.128 0.872 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.006 0.994 29 H 0.012 0.988 30 H 0.022 0.978 31 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.671 7.309 9.864 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.133 4.133 5 C -0.140 4.140 6 C -0.098 4.098 7 C 0.052 3.948 8 N -0.324 5.324 9 C 0.043 3.957 10 C -0.388 4.388 11 H 0.092 0.908 12 C -0.248 4.248 13 N -0.583 5.583 14 Si 0.797 3.203 15 H -0.213 1.213 16 H -0.224 1.224 17 H -0.190 1.190 18 C -0.075 4.075 19 Cl -0.049 7.049 20 H 0.105 0.895 21 H 0.104 0.896 22 H 0.077 0.923 23 H 0.175 0.825 24 H 0.169 0.831 25 H 0.146 0.854 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.024 0.976 29 H 0.031 0.969 30 H 0.041 0.959 31 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.780 7.097 9.700 12.935 hybrid contribution 0.573 -0.344 -1.084 1.274 sum -4.207 6.753 8.615 11.728 Atomic orbital electron populations 1.20840 0.89004 1.03475 1.03423 1.20115 0.97875 0.91403 1.00182 1.21229 0.94282 0.97379 1.01487 1.21497 0.94732 0.98363 0.98662 1.21143 1.00363 0.91718 1.00775 1.20992 0.92694 0.98763 0.97354 1.20058 0.97836 0.90011 0.86886 1.44200 1.25911 1.51250 1.11009 1.20578 0.89879 0.91277 0.93920 1.19565 0.91806 1.39683 0.87759 0.90758 1.25808 0.98728 1.01708 0.98537 1.70269 1.21705 1.55516 1.10806 0.85246 0.79326 0.77701 0.78064 1.21341 1.22449 1.19044 1.20864 0.92113 0.86924 1.07597 1.98300 1.76569 1.33177 1.96846 0.89450 0.89551 0.92321 0.82545 0.83069 0.85447 0.91887 0.92060 0.97563 0.96929 0.95936 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.78 9.62 71.24 0.69 -2.09 16 2 C -0.09 -3.03 5.88 -19.84 -0.12 -3.14 16 3 C -0.13 -3.49 9.70 22.26 0.22 -3.27 16 4 C -0.11 -3.34 10.05 22.27 0.22 -3.11 16 5 C -0.12 -4.28 9.67 22.26 0.22 -4.07 16 6 C -0.09 -3.77 5.47 -19.84 -0.11 -3.87 16 7 C 0.18 7.57 5.40 85.64 0.46 8.03 16 8 N -0.60 -31.06 2.91 -731.31 -2.13 -33.19 16 9 C 0.19 9.80 7.34 127.77 0.94 10.74 16 10 C -0.26 -14.29 9.67 84.03 0.81 -13.47 16 11 H 0.07 3.94 7.85 -2.91 -0.02 3.92 16 12 C -0.05 -3.00 5.11 84.86 0.43 -2.57 16 13 N -0.94 -56.80 10.62 21.65 0.23 -56.57 16 14 Si 0.97 45.69 29.57 68.60 2.03 47.72 16 15 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 16 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 C -0.05 -1.81 6.31 22.32 0.14 -1.67 16 19 Cl -0.08 -2.88 22.45 -2.72 -0.06 -2.94 16 20 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 21 H 0.09 1.77 8.09 -2.39 -0.02 1.75 16 22 H 0.06 1.62 6.90 -2.39 -0.02 1.61 16 23 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 24 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 25 H 0.13 4.26 8.04 -2.91 -0.02 4.23 16 26 H 0.06 2.52 7.90 -2.39 -0.02 2.50 16 27 H 0.06 2.44 7.09 -2.39 -0.02 2.43 16 28 H 0.01 0.34 6.98 -2.39 -0.02 0.33 16 29 H 0.01 0.69 7.10 -2.39 -0.02 0.67 16 30 H 0.02 1.03 6.75 -2.39 -0.02 1.02 16 31 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -65.39 270.32 5.09 -60.30 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 1.12 Total: 3.19 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 3.90 Total: -18.50 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -1.90 Total: -89.76 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 17 Polarization: -2.88 SS G_CDS: -0.06 Total: -2.94 kcal Total: -65.39 5.09 -60.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236854360.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.877 kcal (2) G-P(sol) polarization free energy of solvation -65.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds