Wall clock time and date at job start Sun Mar 29 2020 22:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38377 * 120.00832 * 2 1 4 4 Cl 1.73600 * 120.01454 * 0.02562 * 3 2 1 5 5 C 1.38328 * 119.97305 * 180.30381 * 3 2 1 6 6 C 1.38243 * 119.98638 * 359.39558 * 5 3 2 7 7 C 1.38224 * 120.00955 * 0.62479 * 6 5 3 8 8 C 1.38191 * 120.00407 * 180.02562 * 2 1 3 9 9 C 1.50697 * 119.99644 * 359.97438 * 8 2 1 10 10 N 1.46504 * 109.47224 * 79.99933 * 9 8 2 11 11 C 1.46494 * 119.99999 * 270.00657 * 10 9 8 12 12 C 1.36932 * 119.99831 * 89.99951 * 10 9 8 13 13 H 1.08001 * 119.99759 * 23.61360 * 12 10 9 14 14 C 1.38810 * 120.00117 * 203.61452 * 12 10 9 15 15 N 1.31619 * 120.00057 * 11.26047 * 14 12 10 16 16 Si 1.86804 * 119.99987 * 191.26512 * 14 12 10 17 17 H 1.48491 * 109.47444 * 59.99507 * 16 14 12 18 18 H 1.48498 * 109.46957 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46908 * 299.99512 * 16 14 12 20 20 H 1.08997 * 109.47444 * 89.99609 * 1 2 3 21 21 H 1.09002 * 109.47209 * 210.00220 * 1 2 3 22 22 H 1.09004 * 109.46520 * 330.00032 * 1 2 3 23 23 H 1.07996 * 120.00902 * 179.72257 * 5 3 2 24 24 H 1.08003 * 119.99475 * 180.32452 * 6 5 3 25 25 H 1.08000 * 119.98392 * 179.70083 * 7 6 5 26 26 H 1.08998 * 109.47365 * 200.00413 * 9 8 2 27 27 H 1.09001 * 109.47231 * 320.00339 * 9 8 2 28 28 H 1.09001 * 109.47490 * 94.52894 * 11 10 9 29 29 H 1.08999 * 109.47025 * 214.53210 * 11 10 9 30 30 H 1.09004 * 109.47182 * 334.53286 * 11 10 9 31 31 H 0.97004 * 120.00226 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1983 0.0000 4 17 1.3317 2.7020 0.0007 5 6 3.5823 1.1974 -0.0064 6 6 4.2726 -0.0003 -0.0001 7 6 3.5807 -1.1969 -0.0005 8 6 2.1980 -1.1967 -0.0005 9 6 1.4446 -2.5018 -0.0005 10 7 0.9921 -2.8045 -1.3607 11 6 -0.3159 -2.3311 -1.8199 12 6 1.7920 -3.5298 -2.2028 13 1 2.5443 -4.1902 -1.7974 14 6 1.6361 -3.4163 -3.5774 15 7 0.8832 -2.4595 -4.0775 16 14 2.4945 -4.6216 -4.7175 17 1 2.0342 -6.0010 -4.4169 18 1 2.1683 -4.2875 -6.1272 19 1 3.9630 -4.5346 -4.5148 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3632 0.8901 0.5139 23 1 4.1230 2.1323 -0.0109 24 1 5.3526 -0.0011 0.0003 25 1 4.1203 -2.1324 -0.0005 26 1 2.0993 -3.2994 0.3506 27 1 0.5813 -2.4230 0.6603 28 1 -0.1960 -1.3820 -2.3424 29 1 -0.7512 -3.0661 -2.4969 30 1 -0.9740 -2.1928 -0.9620 31 1 0.7739 -2.3803 -5.0381 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237737961.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:28 Heat of formation + Delta-G solvation = 35.525581 kcal Electronic energy + Delta-G solvation = -15136.094908 eV Core-core repulsion = 12636.883041 eV Total energy + Delta-G solvation = -2499.211867 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.12780 -36.20653 -35.40552 -32.55818 -31.43982 -30.02474 -27.18559 -25.65740 -25.33067 -22.04012 -21.32612 -19.85673 -16.74819 -16.17576 -15.34188 -14.89421 -14.69224 -14.08937 -13.46148 -13.09602 -12.92159 -12.74193 -12.10681 -12.04838 -11.82016 -11.25355 -11.05675 -10.93182 -10.82714 -10.69110 -10.48185 -10.35845 -10.19596 -9.93470 -9.90132 -8.57311 -8.12099 -8.07981 -6.78387 -5.75996 -3.21544 1.73389 1.84402 2.56260 3.36907 3.42278 3.42808 4.15989 4.49527 5.25469 5.27573 5.40974 5.55476 5.66526 5.72453 5.85802 5.97082 6.13219 6.17105 6.36263 6.42334 6.52473 6.68312 6.73205 6.78219 6.92112 7.25598 7.34566 7.40726 7.71788 7.78219 8.36030 9.19361 9.81189 10.30598 11.28226 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.029064 B = 0.007808 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.175096 B = 3584.984641 C = 3809.593563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.037 4.037 4 Cl -0.090 7.090 5 C -0.129 4.129 6 C -0.119 4.119 7 C -0.101 4.101 8 C -0.068 4.068 9 C 0.179 3.821 10 N -0.587 5.587 11 C 0.160 3.840 12 C -0.256 4.256 13 H 0.069 0.931 14 C 0.005 3.995 15 N -0.902 5.902 16 Si 0.905 3.095 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.283 1.283 20 H 0.084 0.916 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.121 0.879 24 H 0.120 0.880 25 H 0.121 0.879 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.001 0.999 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.769 5.562 8.885 10.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.065 4.065 3 C -0.064 4.064 4 Cl -0.061 7.061 5 C -0.149 4.149 6 C -0.138 4.138 7 C -0.121 4.121 8 C -0.072 4.072 9 C 0.052 3.948 10 N -0.308 5.308 11 C 0.016 3.984 12 C -0.386 4.386 13 H 0.087 0.913 14 C -0.194 4.194 15 N -0.546 5.546 16 Si 0.735 3.265 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.209 1.209 20 H 0.102 0.898 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.139 0.861 24 H 0.138 0.862 25 H 0.139 0.861 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.585 5.688 8.668 10.488 hybrid contribution 0.630 -0.227 -0.993 1.197 sum 2.214 5.461 7.675 9.676 Atomic orbital electron populations 1.21065 0.90993 1.02002 1.03502 1.19535 0.96507 0.90821 0.99639 1.20731 0.92154 0.85832 1.07675 1.98305 1.77488 1.33177 1.97149 1.20761 0.91867 0.98574 1.03649 1.20948 0.99348 0.92050 1.01434 1.21070 0.94023 0.97750 0.99227 1.21041 0.94042 0.96780 0.95328 1.20022 0.95715 0.90377 0.88720 1.44075 1.15789 1.61034 1.09913 1.21005 0.83951 0.99309 0.94112 1.19174 1.15780 1.16501 0.87144 0.91332 1.25088 0.99491 0.97570 0.97220 1.70045 1.41682 1.31338 1.11551 0.86330 0.79385 0.80807 0.79980 1.20972 1.21603 1.20905 0.89800 0.91143 0.92244 0.86136 0.86165 0.86075 0.92673 0.92961 0.94865 0.93942 0.98011 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 7.74 36.01 0.28 -1.78 16 2 C -0.06 -1.20 5.88 -104.59 -0.62 -1.81 16 3 C -0.04 -0.66 6.31 -39.50 -0.25 -0.91 16 4 Cl -0.09 -1.41 27.30 -51.86 -1.42 -2.83 16 5 C -0.13 -2.12 9.83 -39.55 -0.39 -2.51 16 6 C -0.12 -1.95 10.05 -39.58 -0.40 -2.34 16 7 C -0.10 -1.85 9.67 -39.58 -0.38 -2.23 16 8 C -0.07 -1.33 5.46 -104.63 -0.57 -1.90 16 9 C 0.18 3.60 5.37 -5.19 -0.03 3.57 16 10 N -0.59 -14.37 2.91 -182.51 -0.53 -14.90 16 11 C 0.16 3.84 7.23 59.84 0.43 4.27 16 12 C -0.26 -6.90 9.66 -15.06 -0.15 -7.05 16 13 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 14 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 15 N -0.90 -26.13 10.65 55.49 0.59 -25.54 16 16 Si 0.91 21.72 29.57 -169.99 -5.03 16.69 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H 0.08 1.60 6.11 -51.93 -0.32 1.28 16 21 H 0.07 1.15 5.22 -51.93 -0.27 0.88 16 22 H 0.06 0.91 6.90 -51.93 -0.36 0.55 16 23 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 24 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 25 H 0.12 2.06 8.04 -52.49 -0.42 1.64 16 26 H 0.05 1.06 7.90 -51.93 -0.41 0.65 16 27 H 0.05 0.95 6.13 -51.93 -0.32 0.63 16 28 H 0.03 0.87 6.13 -51.93 -0.32 0.55 16 29 H 0.04 1.10 7.29 -51.93 -0.38 0.72 16 30 H 0.00 0.03 6.49 -51.93 -0.34 -0.31 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 266.58 15.07 4.02 4.02 Total: -1.00 -29.13 266.58 -8.04 -37.17 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -3.52 Total: -1.98 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -2.16 Total: -12.64 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.06 Total: -40.44 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -1.42 Total: -2.83 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.13 -8.04 -37.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237737961.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.698 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds