Wall clock time and date at job start Sun Mar 29 2020 22:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38377 * 120.00832 * 2 1 4 4 Cl 1.73600 * 120.01454 * 0.02562 * 3 2 1 5 5 C 1.38328 * 119.97305 * 180.30381 * 3 2 1 6 6 C 1.38243 * 119.98638 * 359.39558 * 5 3 2 7 7 C 1.38224 * 120.00955 * 0.62479 * 6 5 3 8 8 C 1.38191 * 120.00407 * 180.02562 * 2 1 3 9 9 C 1.50697 * 119.99644 * 359.97438 * 8 2 1 10 10 N 1.46504 * 109.47224 * 79.99933 * 9 8 2 11 11 C 1.46494 * 119.99999 * 270.00657 * 10 9 8 12 12 C 1.36932 * 119.99831 * 89.99951 * 10 9 8 13 13 H 1.08001 * 119.99759 * 23.61360 * 12 10 9 14 14 C 1.38810 * 120.00117 * 203.61452 * 12 10 9 15 15 N 1.31619 * 120.00057 * 11.26047 * 14 12 10 16 16 Si 1.86804 * 119.99987 * 191.26512 * 14 12 10 17 17 H 1.48491 * 109.47444 * 59.99507 * 16 14 12 18 18 H 1.48498 * 109.46957 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46908 * 299.99512 * 16 14 12 20 20 H 1.08997 * 109.47444 * 89.99609 * 1 2 3 21 21 H 1.09002 * 109.47209 * 210.00220 * 1 2 3 22 22 H 1.09004 * 109.46520 * 330.00032 * 1 2 3 23 23 H 1.07996 * 120.00902 * 179.72257 * 5 3 2 24 24 H 1.08003 * 119.99475 * 180.32452 * 6 5 3 25 25 H 1.08000 * 119.98392 * 179.70083 * 7 6 5 26 26 H 1.08998 * 109.47365 * 200.00413 * 9 8 2 27 27 H 1.09001 * 109.47231 * 320.00339 * 9 8 2 28 28 H 1.09001 * 109.47490 * 94.52894 * 11 10 9 29 29 H 1.08999 * 109.47025 * 214.53210 * 11 10 9 30 30 H 1.09004 * 109.47182 * 334.53286 * 11 10 9 31 31 H 0.97004 * 120.00226 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1983 0.0000 4 17 1.3317 2.7020 0.0007 5 6 3.5823 1.1974 -0.0064 6 6 4.2726 -0.0003 -0.0001 7 6 3.5807 -1.1969 -0.0005 8 6 2.1980 -1.1967 -0.0005 9 6 1.4446 -2.5018 -0.0005 10 7 0.9921 -2.8045 -1.3607 11 6 -0.3159 -2.3311 -1.8199 12 6 1.7920 -3.5298 -2.2028 13 1 2.5443 -4.1902 -1.7974 14 6 1.6361 -3.4163 -3.5774 15 7 0.8832 -2.4595 -4.0775 16 14 2.4945 -4.6216 -4.7175 17 1 2.0342 -6.0010 -4.4169 18 1 2.1683 -4.2875 -6.1272 19 1 3.9630 -4.5346 -4.5148 20 1 -0.3634 0.0001 -1.0276 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3632 0.8901 0.5139 23 1 4.1230 2.1323 -0.0109 24 1 5.3526 -0.0011 0.0003 25 1 4.1203 -2.1324 -0.0005 26 1 2.0993 -3.2994 0.3506 27 1 0.5813 -2.4230 0.6603 28 1 -0.1960 -1.3820 -2.3424 29 1 -0.7512 -3.0661 -2.4969 30 1 -0.9740 -2.1928 -0.9620 31 1 0.7739 -2.3803 -5.0381 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237737961.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:28 Heat of formation + Delta-G solvation = 20.452065 kcal Electronic energy + Delta-G solvation = -15136.748545 eV Core-core repulsion = 12636.883041 eV Total energy + Delta-G solvation = -2499.865503 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.52260 -37.65572 -37.04319 -34.15554 -33.04964 -31.68141 -28.72711 -27.57731 -26.85761 -23.76697 -22.76573 -21.37772 -18.70151 -17.57193 -16.85494 -16.64655 -16.11256 -15.74609 -15.25032 -14.74784 -14.44909 -14.14113 -13.69426 -13.48517 -13.34087 -12.85890 -12.72765 -12.71659 -12.37950 -12.24863 -12.17455 -12.00929 -11.84298 -11.67492 -11.53221 -10.61054 -9.53836 -9.43714 -8.74831 -7.80867 -5.28968 0.35797 0.47577 1.23994 1.46768 1.48699 1.54798 2.51066 2.79539 3.34644 3.88656 3.95192 3.98321 4.17895 4.30247 4.47576 4.62503 4.74333 4.80756 4.86991 4.93014 5.00320 5.06516 5.31302 5.36467 5.40437 5.55845 5.65749 5.78392 5.82679 6.05491 6.34332 7.16824 7.87561 8.31769 9.21693 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.029064 B = 0.007808 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.175096 B = 3584.984641 C = 3809.593563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.082 4.082 3 C -0.051 4.051 4 Cl -0.075 7.075 5 C -0.126 4.126 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.090 4.090 9 C 0.179 3.821 10 N -0.603 5.603 11 C 0.179 3.821 12 C -0.259 4.259 13 H 0.074 0.926 14 C -0.050 4.050 15 N -0.935 5.935 16 Si 0.965 3.035 17 H -0.277 1.277 18 H -0.298 1.298 19 H -0.276 1.276 20 H 0.062 0.938 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.148 0.852 24 H 0.154 0.846 25 H 0.128 0.872 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.006 0.994 29 H 0.011 0.989 30 H 0.034 0.966 31 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.997 5.982 9.978 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.078 4.078 4 Cl -0.046 7.046 5 C -0.145 4.145 6 C -0.135 4.135 7 C -0.134 4.134 8 C -0.093 4.093 9 C 0.053 3.947 10 N -0.325 5.325 11 C 0.034 3.966 12 C -0.390 4.390 13 H 0.091 0.909 14 C -0.246 4.246 15 N -0.582 5.582 16 Si 0.793 3.207 17 H -0.203 1.203 18 H -0.224 1.224 19 H -0.202 1.202 20 H 0.080 0.920 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.166 0.834 24 H 0.171 0.829 25 H 0.146 0.854 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.025 0.975 29 H 0.030 0.970 30 H 0.052 0.948 31 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.832 6.111 9.809 11.899 hybrid contribution 0.280 -0.272 -1.184 1.246 sum 3.112 5.839 8.626 10.871 Atomic orbital electron populations 1.20981 0.90424 1.03121 1.02329 1.19752 0.97228 0.91273 1.00102 1.20944 0.93006 0.86248 1.07599 1.98306 1.77303 1.31934 1.97072 1.21171 0.91553 0.99892 1.01914 1.21325 1.01069 0.91186 0.99901 1.21321 0.93761 0.99061 0.99238 1.20972 0.94825 0.96492 0.97055 1.20096 0.96770 0.91160 0.86645 1.44198 1.15890 1.61525 1.10887 1.20712 0.84564 0.96861 0.94468 1.19508 1.15243 1.16531 0.87694 0.90874 1.25788 1.00789 0.99294 0.98695 1.70225 1.43728 1.33198 1.11027 0.85381 0.78596 0.79063 0.77642 1.20294 1.22447 1.20196 0.91977 0.90551 0.90611 0.83448 0.82853 0.85392 0.91957 0.91097 0.97542 0.96980 0.94754 0.94492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.78 7.74 71.24 0.55 -3.23 16 2 C -0.08 -3.00 5.88 -19.84 -0.12 -3.12 16 3 C -0.05 -1.72 6.31 22.32 0.14 -1.58 16 4 Cl -0.07 -2.21 27.30 -2.72 -0.07 -2.28 16 5 C -0.13 -3.79 9.83 22.29 0.22 -3.57 16 6 C -0.12 -3.46 10.05 22.27 0.22 -3.24 16 7 C -0.11 -3.97 9.67 22.27 0.22 -3.76 16 8 C -0.09 -3.43 5.46 -19.87 -0.11 -3.53 16 9 C 0.18 7.02 5.37 85.63 0.46 7.48 16 10 N -0.60 -29.42 2.91 -731.32 -2.12 -31.55 16 11 C 0.18 8.65 7.23 127.77 0.92 9.58 16 12 C -0.26 -13.94 9.66 84.03 0.81 -13.13 16 13 H 0.07 3.77 7.85 -2.91 -0.02 3.75 16 14 C -0.05 -2.81 5.13 84.86 0.44 -2.37 16 15 N -0.94 -55.45 10.65 21.65 0.23 -55.22 16 16 Si 0.96 44.93 29.57 68.60 2.03 46.96 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 H 0.06 2.38 6.11 -2.39 -0.01 2.36 16 21 H 0.08 2.40 5.22 -2.39 -0.01 2.39 16 22 H 0.08 2.23 6.90 -2.38 -0.02 2.21 16 23 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 24 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 25 H 0.13 4.14 8.04 -2.91 -0.02 4.11 16 26 H 0.06 2.32 7.90 -2.39 -0.02 2.30 16 27 H 0.07 2.47 6.13 -2.39 -0.01 2.45 16 28 H 0.01 0.34 6.13 -2.39 -0.01 0.33 16 29 H 0.01 0.62 7.29 -2.39 -0.02 0.60 16 30 H 0.03 1.39 6.49 -2.38 -0.02 1.38 16 31 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -61.97 266.58 4.95 -57.02 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: 1.13 Total: 5.53 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 3.76 Total: -20.47 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -1.89 Total: -86.76 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 17 Polarization: -2.21 SS G_CDS: -0.07 Total: -2.28 kcal Total: -61.97 4.95 -57.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237737961.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.476 kcal (2) G-P(sol) polarization free energy of solvation -61.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds