Wall clock time and date at job start Sun Mar 29 2020 22:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 119.98953 * 2 1 4 4 C 1.38193 * 120.01303 * 180.29933 * 3 2 1 5 5 C 1.38379 * 119.98481 * 359.47601 * 4 3 2 6 6 Cl 1.73603 * 120.01026 * 180.27567 * 5 4 3 7 7 C 1.38323 * 119.97397 * 0.25234 * 5 4 3 8 8 C 1.50705 * 120.00750 * 180.02562 * 7 5 4 9 9 N 1.46497 * 109.47017 * 277.32981 * 8 7 5 10 10 C 1.46500 * 119.99761 * 276.52199 * 9 8 7 11 11 C 1.36935 * 119.99762 * 96.52948 * 9 8 7 12 12 H 1.07997 * 120.00235 * 327.43236 * 11 9 8 13 13 C 1.38813 * 120.00130 * 147.44163 * 11 9 8 14 14 N 1.31620 * 120.00389 * 155.99513 * 13 11 9 15 15 Si 1.86805 * 119.99822 * 335.99914 * 13 11 9 16 16 H 1.48503 * 109.46945 * 94.81537 * 15 13 11 17 17 H 1.48498 * 109.46956 * 214.81602 * 15 13 11 18 18 H 1.48496 * 109.47126 * 334.81835 * 15 13 11 19 19 C 1.38223 * 119.98320 * 179.75264 * 2 1 3 20 20 H 1.08999 * 109.46563 * 270.25047 * 1 2 3 21 21 H 1.08997 * 109.46888 * 30.24742 * 1 2 3 22 22 H 1.08998 * 109.47118 * 150.24745 * 1 2 3 23 23 H 1.08005 * 119.99690 * 0.05109 * 3 2 1 24 24 H 1.08000 * 120.00866 * 179.75335 * 4 3 2 25 25 H 1.09003 * 109.46710 * 37.32798 * 8 7 5 26 26 H 1.08996 * 109.46879 * 157.32644 * 8 7 5 27 27 H 1.09002 * 109.46880 * 86.60838 * 10 9 8 28 28 H 1.08999 * 109.47026 * 206.60112 * 10 9 8 29 29 H 1.08998 * 109.47546 * 326.60581 * 10 9 8 30 30 H 0.96998 * 120.00311 * 180.02562 * 14 13 11 31 31 H 1.07997 * 119.99354 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5800 1.1981 -0.0063 5 6 4.2721 -0.0002 -0.0016 6 17 6.0082 -0.0002 -0.0022 7 6 3.5802 -1.1979 0.0041 8 6 4.3332 -2.5034 0.0098 9 7 4.7293 -2.8445 -1.3587 10 6 3.7818 -3.5200 -2.2487 11 6 5.9854 -2.5322 -1.8058 12 1 6.4839 -1.6465 -1.4406 13 6 6.6179 -3.3539 -2.7287 14 7 7.5620 -2.8665 -3.5055 15 14 6.1289 -5.1514 -2.8682 16 1 5.1196 -5.3076 -3.9462 17 1 7.3275 -5.9668 -3.1903 18 1 5.5510 -5.6087 -1.5790 19 6 2.1978 -1.1972 0.0052 20 1 -0.3632 0.0045 1.0277 21 1 -0.3633 0.8877 -0.5177 22 1 -0.3633 -0.8922 -0.5100 23 1 1.6579 2.1327 0.0008 24 1 4.1198 2.1335 -0.0103 25 1 5.2228 -2.4069 0.6323 26 1 3.6934 -3.2900 0.4098 27 1 3.1625 -2.7770 -2.7513 28 1 4.3305 -4.0983 -2.9920 29 1 3.1473 -4.1871 -1.6651 30 1 8.0037 -3.4406 -4.1507 31 1 1.6574 -2.1323 0.0096 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238556982.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:37 Heat of formation + Delta-G solvation = 42.748027 kcal Electronic energy + Delta-G solvation = -14974.457214 eV Core-core repulsion = 12475.558536 eV Total energy + Delta-G solvation = -2498.898678 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.21146 -35.98558 -35.62854 -32.51592 -31.73488 -30.67355 -26.99479 -26.26169 -25.53516 -22.26120 -21.52305 -19.82739 -16.82446 -16.41684 -15.43380 -15.25066 -14.73973 -14.12978 -13.56378 -13.33280 -13.20140 -12.83345 -12.36307 -12.32193 -12.19964 -12.13636 -11.36919 -11.21285 -10.96066 -10.82701 -10.57751 -10.45885 -10.11955 -9.70596 -9.19343 -8.61880 -8.38658 -8.01256 -6.84464 -5.88433 -3.25966 1.53236 1.65120 2.82663 3.35444 3.52065 3.56402 3.94223 4.60709 5.00097 5.01461 5.17623 5.24747 5.41260 5.46481 5.58173 5.61623 5.82097 5.87019 6.04233 6.17741 6.25804 6.27007 6.50510 6.52438 6.66842 6.74119 6.79749 6.91886 7.18256 8.09537 8.49486 9.07169 9.80863 10.15863 11.26187 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.008903 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.896772 B = 3144.350478 C = 3825.451014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.124 4.124 4 C -0.115 4.115 5 C -0.022 4.022 6 Cl -0.050 7.050 7 C -0.073 4.073 8 C 0.178 3.822 9 N -0.599 5.599 10 C 0.110 3.890 11 C -0.272 4.272 12 H 0.105 0.895 13 C 0.029 3.971 14 N -0.901 5.901 15 Si 0.876 3.124 16 H -0.289 1.289 17 H -0.305 1.305 18 H -0.273 1.273 19 C -0.106 4.106 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.121 0.879 24 H 0.125 0.875 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.014 0.986 28 H 0.049 0.951 29 H 0.027 0.973 30 H 0.261 0.739 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.889 5.614 8.300 15.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C -0.142 4.142 4 C -0.133 4.133 5 C -0.049 4.049 6 Cl -0.021 7.021 7 C -0.076 4.076 8 C 0.051 3.949 9 N -0.322 5.322 10 C -0.035 4.035 11 C -0.400 4.400 12 H 0.122 0.878 13 C -0.170 4.170 14 N -0.543 5.543 15 Si 0.708 3.292 16 H -0.218 1.218 17 H -0.233 1.233 18 H -0.198 1.198 19 C -0.125 4.125 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.139 0.861 24 H 0.143 0.857 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.032 0.968 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.574 5.548 8.159 15.209 hybrid contribution -0.088 -0.994 -0.389 1.071 sum -11.662 4.554 7.769 14.735 Atomic orbital electron populations 1.20737 0.91429 1.02549 1.01906 1.19893 0.95869 0.93258 1.00381 1.20794 0.93296 0.97429 1.02692 1.20983 0.94225 0.96727 1.01399 1.20839 0.85728 0.94349 1.03974 1.98385 1.08906 1.98522 1.96276 1.20963 0.93827 0.97017 0.95830 1.19916 0.97158 0.89741 0.88117 1.44055 1.11720 1.68979 1.07425 1.21364 0.92807 0.95227 0.94067 1.19430 0.90962 1.06713 1.22914 0.87776 1.25387 0.96335 0.97536 0.97775 1.69891 1.27999 1.35101 1.21320 0.86995 0.75994 0.88374 0.77853 1.21807 1.23308 1.19789 1.20844 0.92975 0.97415 1.01275 0.91492 0.91822 0.91672 0.86071 0.85668 0.90653 0.93647 0.96777 0.93333 0.95422 0.92915 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 36.01 0.36 -0.76 16 2 C -0.09 -1.30 5.88 -104.62 -0.62 -1.91 16 3 C -0.12 -1.70 9.70 -39.59 -0.38 -2.08 16 4 C -0.11 -1.79 9.83 -39.55 -0.39 -2.18 16 5 C -0.02 -0.40 6.31 -39.50 -0.25 -0.65 16 6 Cl -0.05 -0.99 24.37 -51.86 -1.26 -2.26 16 7 C -0.07 -1.34 5.45 -104.59 -0.57 -1.91 16 8 C 0.18 3.59 5.39 -5.19 -0.03 3.56 16 9 N -0.60 -14.50 2.56 -182.50 -0.47 -14.97 16 10 C 0.11 2.47 9.47 59.85 0.57 3.04 16 11 C -0.27 -7.62 9.64 -15.06 -0.15 -7.77 16 12 H 0.11 3.00 4.95 -52.49 -0.26 2.74 16 13 C 0.03 0.85 5.29 -17.43 -0.09 0.75 16 14 N -0.90 -27.95 13.97 55.49 0.78 -27.18 16 15 Si 0.88 22.62 24.95 -169.99 -4.24 18.38 16 16 H -0.29 -7.29 6.61 56.52 0.37 -6.91 16 17 H -0.30 -8.00 7.11 56.52 0.40 -7.59 16 18 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.11 -1.67 9.33 -39.59 -0.37 -2.04 16 20 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 22 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 23 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 24 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 25 H 0.08 1.56 7.08 -51.93 -0.37 1.19 16 26 H 0.05 0.82 7.90 -51.93 -0.41 0.41 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 1.18 2.87 -51.93 -0.15 1.03 16 29 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.12 1.71 8.05 -52.49 -0.42 1.29 16 LS Contribution 268.73 15.07 4.05 4.05 Total: -1.00 -31.37 268.73 -6.78 -38.15 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: -3.72 Total: -4.25 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -1.91 Total: -11.93 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.31 Total: -42.14 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.24 Total: 18.38 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.26 Total: -2.26 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.37 -6.78 -38.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238556982.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.901 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds