Wall clock time and date at job start Sun Mar 29 2020 22:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 119.98953 * 2 1 4 4 C 1.38193 * 120.01303 * 180.29933 * 3 2 1 5 5 C 1.38379 * 119.98481 * 359.47601 * 4 3 2 6 6 Cl 1.73603 * 120.01026 * 180.27567 * 5 4 3 7 7 C 1.38323 * 119.97397 * 0.25234 * 5 4 3 8 8 C 1.50705 * 120.00750 * 180.02562 * 7 5 4 9 9 N 1.46497 * 109.47017 * 277.32981 * 8 7 5 10 10 C 1.46500 * 119.99761 * 276.52199 * 9 8 7 11 11 C 1.36935 * 119.99762 * 96.52948 * 9 8 7 12 12 H 1.07997 * 120.00235 * 327.43236 * 11 9 8 13 13 C 1.38813 * 120.00130 * 147.44163 * 11 9 8 14 14 N 1.31620 * 120.00389 * 155.99513 * 13 11 9 15 15 Si 1.86805 * 119.99822 * 335.99914 * 13 11 9 16 16 H 1.48503 * 109.46945 * 94.81537 * 15 13 11 17 17 H 1.48498 * 109.46956 * 214.81602 * 15 13 11 18 18 H 1.48496 * 109.47126 * 334.81835 * 15 13 11 19 19 C 1.38223 * 119.98320 * 179.75264 * 2 1 3 20 20 H 1.08999 * 109.46563 * 270.25047 * 1 2 3 21 21 H 1.08997 * 109.46888 * 30.24742 * 1 2 3 22 22 H 1.08998 * 109.47118 * 150.24745 * 1 2 3 23 23 H 1.08005 * 119.99690 * 0.05109 * 3 2 1 24 24 H 1.08000 * 120.00866 * 179.75335 * 4 3 2 25 25 H 1.09003 * 109.46710 * 37.32798 * 8 7 5 26 26 H 1.08996 * 109.46879 * 157.32644 * 8 7 5 27 27 H 1.09002 * 109.46880 * 86.60838 * 10 9 8 28 28 H 1.08999 * 109.47026 * 206.60112 * 10 9 8 29 29 H 1.08998 * 109.47546 * 326.60581 * 10 9 8 30 30 H 0.96998 * 120.00311 * 180.02562 * 14 13 11 31 31 H 1.07997 * 119.99354 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5800 1.1981 -0.0063 5 6 4.2721 -0.0002 -0.0016 6 17 6.0082 -0.0002 -0.0022 7 6 3.5802 -1.1979 0.0041 8 6 4.3332 -2.5034 0.0098 9 7 4.7293 -2.8445 -1.3587 10 6 3.7818 -3.5200 -2.2487 11 6 5.9854 -2.5322 -1.8058 12 1 6.4839 -1.6465 -1.4406 13 6 6.6179 -3.3539 -2.7287 14 7 7.5620 -2.8665 -3.5055 15 14 6.1289 -5.1514 -2.8682 16 1 5.1196 -5.3076 -3.9462 17 1 7.3275 -5.9668 -3.1903 18 1 5.5510 -5.6087 -1.5790 19 6 2.1978 -1.1972 0.0052 20 1 -0.3632 0.0045 1.0277 21 1 -0.3633 0.8877 -0.5177 22 1 -0.3633 -0.8922 -0.5100 23 1 1.6579 2.1327 0.0008 24 1 4.1198 2.1335 -0.0103 25 1 5.2228 -2.4069 0.6323 26 1 3.6934 -3.2900 0.4098 27 1 3.1625 -2.7770 -2.7513 28 1 4.3305 -4.0983 -2.9920 29 1 3.1473 -4.1871 -1.6651 30 1 8.0037 -3.4406 -4.1507 31 1 1.6574 -2.1323 0.0096 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238556982.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:36 Heat of formation + Delta-G solvation = 24.254578 kcal Electronic energy + Delta-G solvation = -14975.259150 eV Core-core repulsion = 12475.558536 eV Total energy + Delta-G solvation = -2499.700614 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.44823 -37.59812 -37.19132 -34.10703 -33.18089 -32.23698 -28.42466 -27.52083 -27.36000 -23.78529 -22.95270 -21.21360 -18.82962 -17.66894 -17.32993 -16.65208 -16.01665 -15.83662 -14.82348 -14.68507 -14.54707 -14.35958 -14.27727 -13.84707 -13.53723 -13.27753 -12.98979 -12.67333 -12.51897 -12.28970 -12.11026 -11.91867 -11.77309 -11.63572 -11.01433 -10.57687 -9.75699 -9.30539 -8.78057 -8.08120 -5.42126 0.31734 0.43518 1.31068 1.42421 1.46829 1.53447 2.48938 2.71443 3.15204 3.58133 3.90018 3.95883 4.03989 4.37574 4.45156 4.53263 4.64608 4.74864 4.80201 4.82959 4.92566 4.95818 5.03582 5.15816 5.25870 5.37817 5.58554 5.66879 6.02154 6.03580 6.39174 7.03059 7.71375 8.09058 9.09990 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.008903 C = 0.007318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.896772 B = 3144.350478 C = 3825.451014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.088 4.088 3 C -0.117 4.117 4 C -0.121 4.121 5 C -0.050 4.050 6 Cl -0.079 7.079 7 C -0.095 4.095 8 C 0.178 3.822 9 N -0.614 5.614 10 C 0.108 3.892 11 C -0.258 4.258 12 H 0.088 0.912 13 C -0.035 4.035 14 N -0.953 5.953 15 Si 0.940 3.060 16 H -0.280 1.280 17 H -0.316 1.316 18 H -0.260 1.260 19 C -0.110 4.110 20 H 0.085 0.915 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.157 0.843 24 H 0.138 0.862 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.018 0.982 28 H 0.029 0.971 29 H 0.063 0.937 30 H 0.258 0.742 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.352 5.652 9.189 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.088 4.088 3 C -0.135 4.135 4 C -0.140 4.140 5 C -0.077 4.077 6 Cl -0.050 7.050 7 C -0.099 4.099 8 C 0.052 3.948 9 N -0.337 5.337 10 C -0.036 4.036 11 C -0.387 4.387 12 H 0.105 0.895 13 C -0.229 4.229 14 N -0.599 5.599 15 Si 0.770 3.230 16 H -0.208 1.208 17 H -0.246 1.246 18 H -0.185 1.185 19 C -0.129 4.129 20 H 0.104 0.896 21 H 0.098 0.902 22 H 0.090 0.910 23 H 0.175 0.825 24 H 0.156 0.844 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.092 5.585 9.087 18.481 hybrid contribution 0.841 -0.854 -0.566 1.325 sum -14.251 4.731 8.520 17.265 Atomic orbital electron populations 1.20816 0.88366 1.03763 1.03447 1.20360 0.98028 0.92425 0.98022 1.21247 0.92459 0.99143 1.00645 1.21246 0.95376 0.96299 1.01073 1.21106 0.84395 0.95779 1.06391 1.98368 1.11524 1.98581 1.96573 1.20795 0.95005 0.95751 0.98301 1.19979 0.97326 0.91632 0.85833 1.44186 1.10756 1.69389 1.09356 1.21408 0.92567 0.95581 0.94012 1.19586 0.92201 1.05764 1.21157 0.89499 1.25996 0.97183 1.01317 0.98412 1.70021 1.30554 1.36271 1.23068 0.85956 0.75287 0.83281 0.78454 1.20758 1.24566 1.18483 1.21090 0.91816 0.99213 1.00789 0.89628 0.90192 0.90977 0.82543 0.84395 0.92253 0.90971 0.96382 0.95309 0.91828 0.93319 0.84169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 71.24 0.71 -0.93 16 2 C -0.09 -2.08 5.88 -19.86 -0.12 -2.19 16 3 C -0.12 -2.78 9.70 22.26 0.22 -2.56 16 4 C -0.12 -3.58 9.83 22.29 0.22 -3.36 16 5 C -0.05 -1.80 6.31 22.32 0.14 -1.66 16 6 Cl -0.08 -3.24 24.37 -2.72 -0.07 -3.31 16 7 C -0.10 -3.37 5.45 -19.84 -0.11 -3.48 16 8 C 0.18 6.98 5.39 85.64 0.46 7.44 16 9 N -0.61 -29.09 2.56 -731.31 -1.87 -30.96 16 10 C 0.11 4.62 9.47 127.77 1.21 5.83 16 11 C -0.26 -14.63 9.64 84.03 0.81 -13.82 16 12 H 0.09 5.18 4.95 -2.91 -0.01 5.16 16 13 C -0.03 -2.06 5.29 84.86 0.45 -1.61 16 14 N -0.95 -61.12 13.97 21.65 0.30 -60.81 16 15 Si 0.94 47.25 24.95 68.60 1.71 48.96 16 16 H -0.28 -13.44 6.61 99.48 0.66 -12.78 16 17 H -0.32 -16.30 7.11 99.48 0.71 -15.60 16 18 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 19 C -0.11 -3.12 9.33 22.27 0.21 -2.91 16 20 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 22 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 23 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 24 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 25 H 0.06 2.47 7.08 -2.39 -0.02 2.46 16 26 H 0.07 2.41 7.90 -2.39 -0.02 2.39 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.03 1.35 2.87 -2.39 -0.01 1.34 16 29 H 0.06 2.23 8.00 -2.39 -0.02 2.21 16 30 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 31 H 0.14 3.36 8.05 -2.91 -0.02 3.34 16 Total: -1.00 -68.96 268.73 5.36 -63.60 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: 1.08 Total: 1.77 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 4.20 Total: -19.24 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -1.57 Total: -91.78 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.71 Total: 48.96 kcal Atomic # 17 Polarization: -3.24 SS G_CDS: -0.07 Total: -3.31 kcal Total: -68.96 5.36 -63.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238556982.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.852 kcal (2) G-P(sol) polarization free energy of solvation -68.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds