Wall clock time and date at job start Sun Mar 29 2020 21:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39048 * 120.56161 * 229.25026 * 3 2 1 5 5 C 1.39446 * 119.79432 * 180.30730 * 4 3 2 6 6 C 1.47915 * 119.49913 * 179.68978 * 5 4 3 7 7 C 1.46811 * 127.15926 * 180.02562 * 6 5 4 8 8 C 1.34294 * 106.03149 * 179.97438 * 7 6 5 9 9 O 1.34205 * 109.10384 * 0.02562 * 8 7 6 10 10 C 1.33976 * 110.81110 * 359.72851 * 9 8 7 11 11 C 1.40048 * 120.99885 * 359.71195 * 5 4 3 12 12 C 1.35943 * 121.18305 * 359.97438 * 11 5 4 13 13 C 1.41078 * 120.11998 * 0.04387 * 12 11 5 14 14 C 1.40385 * 120.48518 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99619 * 154.62752 * 14 13 12 16 16 C 1.40226 * 119.99972 * 334.62703 * 14 13 12 17 17 N 1.30679 * 120.00189 * 334.60265 * 16 14 13 18 18 Si 1.86803 * 119.99876 * 154.60539 * 16 14 13 19 19 H 1.48500 * 109.47282 * 179.97438 * 18 16 14 20 20 H 1.48493 * 109.46992 * 299.99773 * 18 16 14 21 21 H 1.48498 * 109.47377 * 59.99909 * 18 16 14 22 22 H 1.07995 * 120.09691 * 359.97438 * 4 3 2 23 23 H 1.08006 * 126.98574 * 0.03628 * 7 6 5 24 24 H 1.07999 * 125.44990 * 180.02562 * 8 7 6 25 25 H 1.07993 * 125.81436 * 180.32551 * 10 9 8 26 26 H 1.07997 * 119.40684 * 180.02562 * 11 5 4 27 27 H 1.08007 * 119.93856 * 180.02562 * 12 11 5 28 28 H 0.96997 * 119.99846 * 354.17874 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2747 0.7825 0.9071 5 6 4.6690 0.7759 0.8887 6 6 5.4141 1.6154 1.8520 7 6 6.8715 1.7370 1.9803 8 6 7.0844 2.6063 2.9816 9 8 5.9019 3.0168 3.4657 10 6 4.8903 2.4416 2.8019 11 6 5.3745 -0.0133 -0.0283 12 6 4.7244 -0.7975 -0.9285 13 6 3.3142 -0.8276 -0.9530 14 6 2.6350 -1.6343 -1.8797 15 1 1.6360 -1.9826 -1.6624 16 6 3.2537 -1.9879 -3.0875 17 7 4.1893 -1.2263 -3.5898 18 14 2.7402 -3.5475 -3.9783 19 1 3.5391 -3.6932 -5.2216 20 1 2.9749 -4.7203 -3.0983 21 1 1.2981 -3.4684 -4.3236 22 1 2.7452 1.3971 1.6200 23 1 7.6204 1.2310 1.3890 24 1 8.0523 2.9242 3.3399 25 1 3.8389 2.6035 2.9885 26 1 6.4543 0.0009 -0.0196 27 1 5.2887 -1.3985 -1.6264 28 1 4.3974 -0.3753 -3.1737 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239687860.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:55 Heat of formation + Delta-G solvation = 41.403391 kcal Electronic energy + Delta-G solvation = -15265.238476 eV Core-core repulsion = 12632.881246 eV Total energy + Delta-G solvation = -2632.357231 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.069 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.81163 -38.03912 -35.30054 -34.71602 -32.37850 -30.25649 -30.03801 -28.42459 -25.58767 -22.75663 -22.04291 -20.79046 -19.69662 -18.53811 -17.69682 -16.23195 -15.46970 -15.00762 -14.72738 -14.40377 -14.09182 -13.22164 -12.97807 -12.63507 -12.54049 -12.26849 -12.04374 -11.88345 -11.58546 -11.29496 -11.25957 -10.93847 -10.60278 -10.04853 -9.95908 -9.59278 -9.22552 -8.51486 -8.04303 -7.70990 -7.35499 -4.85707 1.90713 2.09624 2.39606 2.92450 2.98246 3.17793 3.37816 3.50623 3.71428 3.78409 4.14148 4.33046 5.00188 5.22933 5.28220 5.37901 5.66701 5.75989 6.01273 6.05495 6.14426 6.51307 6.59536 6.64213 6.86845 6.94601 7.20295 7.31159 7.40101 7.52483 7.62858 7.71744 7.82116 8.22939 8.34093 8.68835 9.54153 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.006431 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.270898 B = 4352.958362 C = 5142.407796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.298 3.702 3 C -0.189 4.189 4 C 0.002 3.998 5 C -0.180 4.180 6 C -0.083 4.083 7 C -0.217 4.217 8 C -0.048 4.048 9 O -0.190 6.190 10 C -0.084 4.084 11 C -0.035 4.035 12 C -0.217 4.217 13 C 0.129 3.871 14 C -0.465 4.465 15 H 0.087 0.913 16 C 0.036 3.964 17 N -0.756 5.756 18 Si 1.066 2.934 19 H -0.268 1.268 20 H -0.268 1.268 21 H -0.271 1.271 22 H 0.100 0.900 23 H 0.145 0.855 24 H 0.194 0.806 25 H 0.196 0.804 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.434 1.965 4.647 8.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.011 4.011 3 C -0.195 4.195 4 C -0.019 4.019 5 C -0.181 4.181 6 C -0.084 4.084 7 C -0.236 4.236 8 C -0.115 4.115 9 O -0.088 6.088 10 C -0.150 4.150 11 C -0.054 4.054 12 C -0.236 4.236 13 C 0.123 3.877 14 C -0.491 4.491 15 H 0.105 0.895 16 C -0.191 4.191 17 N -0.376 5.376 18 Si 0.888 3.112 19 H -0.192 1.192 20 H -0.193 1.193 21 H -0.196 1.196 22 H 0.118 0.882 23 H 0.163 0.837 24 H 0.211 0.789 25 H 0.213 0.787 26 H 0.116 0.884 27 H 0.133 0.867 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.023 1.270 3.523 6.265 hybrid contribution 0.263 0.875 1.183 1.495 sum 5.286 2.145 4.707 7.395 Atomic orbital electron populations 1.81034 1.12615 1.12560 1.12153 1.25708 0.92635 0.91475 0.91315 1.16648 0.83298 1.10279 1.09259 1.20525 0.92645 0.94282 0.94401 1.17093 0.91137 1.07289 1.02624 1.20398 0.91948 0.98674 0.97388 1.22823 0.95625 1.03475 1.01690 1.23692 0.88279 1.00876 0.98606 1.83745 1.14282 1.58094 1.52692 1.23913 0.91990 1.01218 0.97883 1.20373 0.97841 0.93950 0.93261 1.20773 0.93608 1.05401 1.03776 1.18482 0.91390 0.87795 0.90027 1.20873 1.03465 1.23149 1.01619 0.89526 1.27399 0.92235 1.03612 0.95820 1.70417 1.20387 1.09832 1.36982 0.83595 0.77515 0.73352 0.76758 1.19211 1.19291 1.19555 0.88152 0.83743 0.78876 0.78713 0.88440 0.86733 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.07 18.54 41.84 0.78 -11.30 15 2 C 0.30 6.95 14.30 -22.47 -0.32 6.63 15 3 C -0.19 -4.28 5.93 -104.27 -0.62 -4.90 15 4 C 0.00 0.05 9.28 -38.83 -0.36 -0.31 15 5 C -0.18 -3.58 5.88 -104.81 -0.62 -4.19 15 6 C -0.08 -1.47 6.23 -103.15 -0.64 -2.11 15 7 C -0.22 -3.33 10.50 -37.51 -0.39 -3.72 15 8 C -0.05 -0.64 12.04 29.34 0.35 -0.28 15 9 O -0.19 -2.90 10.54 6.84 0.07 -2.82 15 10 C -0.08 -1.34 11.52 30.06 0.35 -1.00 15 11 C -0.04 -0.71 9.48 -39.73 -0.38 -1.09 15 12 C -0.22 -4.77 7.88 -39.33 -0.31 -5.08 15 13 C 0.13 3.04 5.46 -104.61 -0.57 2.47 15 14 C -0.47 -11.14 8.48 -38.03 -0.32 -11.46 15 15 H 0.09 2.12 7.45 -52.48 -0.39 1.73 15 16 C 0.04 0.81 4.94 -17.30 -0.09 0.73 15 17 N -0.76 -17.55 12.31 55.56 0.68 -16.87 15 18 Si 1.07 19.28 30.01 -169.99 -5.10 14.18 15 19 H -0.27 -4.76 7.11 56.52 0.40 -4.36 15 20 H -0.27 -4.66 7.11 56.52 0.40 -4.26 15 21 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 22 H 0.10 1.79 7.01 -52.49 -0.37 1.42 15 23 H 0.14 1.97 7.54 -52.48 -0.40 1.58 15 24 H 0.19 1.72 8.06 -52.49 -0.42 1.30 15 25 H 0.20 2.63 7.29 -52.49 -0.38 2.25 15 26 H 0.10 1.74 7.13 -52.49 -0.37 1.37 15 27 H 0.11 2.55 6.49 -52.48 -0.34 2.21 15 28 H 0.31 7.26 6.68 -40.82 -0.27 6.99 15 LS Contribution 262.28 15.07 3.95 3.95 Total: -1.00 -26.08 262.28 -5.28 -31.36 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -1.74 Total: 5.82 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -3.92 Total: -24.33 kcal Atomic # 7 Polarization: -29.62 SS G_CDS: 1.46 Total: -28.16 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: 0.07 Total: -2.82 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.10 Total: 14.18 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.08 -5.28 -31.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239687860.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.762 kcal (2) G-P(sol) polarization free energy of solvation -26.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds