Wall clock time and date at job start Sun Mar 29 2020 21:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39048 * 120.56161 * 229.25026 * 3 2 1 5 5 C 1.39446 * 119.79432 * 180.30730 * 4 3 2 6 6 C 1.47915 * 119.49913 * 179.68978 * 5 4 3 7 7 C 1.46811 * 127.15926 * 180.02562 * 6 5 4 8 8 C 1.34294 * 106.03149 * 179.97438 * 7 6 5 9 9 O 1.34205 * 109.10384 * 0.02562 * 8 7 6 10 10 C 1.33976 * 110.81110 * 359.72851 * 9 8 7 11 11 C 1.40048 * 120.99885 * 359.71195 * 5 4 3 12 12 C 1.35943 * 121.18305 * 359.97438 * 11 5 4 13 13 C 1.41078 * 120.11998 * 0.04387 * 12 11 5 14 14 C 1.40385 * 120.48518 * 179.97438 * 13 12 11 15 15 H 1.08008 * 119.99619 * 154.62752 * 14 13 12 16 16 C 1.40226 * 119.99972 * 334.62703 * 14 13 12 17 17 N 1.30679 * 120.00189 * 334.60265 * 16 14 13 18 18 Si 1.86803 * 119.99876 * 154.60539 * 16 14 13 19 19 H 1.48500 * 109.47282 * 179.97438 * 18 16 14 20 20 H 1.48493 * 109.46992 * 299.99773 * 18 16 14 21 21 H 1.48498 * 109.47377 * 59.99909 * 18 16 14 22 22 H 1.07995 * 120.09691 * 359.97438 * 4 3 2 23 23 H 1.08006 * 126.98574 * 0.03628 * 7 6 5 24 24 H 1.07999 * 125.44990 * 180.02562 * 8 7 6 25 25 H 1.07993 * 125.81436 * 180.32551 * 10 9 8 26 26 H 1.07997 * 119.40684 * 180.02562 * 11 5 4 27 27 H 1.08007 * 119.93856 * 180.02562 * 12 11 5 28 28 H 0.96997 * 119.99846 * 354.17874 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2747 0.7825 0.9071 5 6 4.6690 0.7759 0.8887 6 6 5.4141 1.6154 1.8520 7 6 6.8715 1.7370 1.9803 8 6 7.0844 2.6063 2.9816 9 8 5.9019 3.0168 3.4657 10 6 4.8903 2.4416 2.8019 11 6 5.3745 -0.0133 -0.0283 12 6 4.7244 -0.7975 -0.9285 13 6 3.3142 -0.8276 -0.9530 14 6 2.6350 -1.6343 -1.8797 15 1 1.6360 -1.9826 -1.6624 16 6 3.2537 -1.9879 -3.0875 17 7 4.1893 -1.2263 -3.5898 18 14 2.7402 -3.5475 -3.9783 19 1 3.5391 -3.6932 -5.2216 20 1 2.9749 -4.7203 -3.0983 21 1 1.2981 -3.4684 -4.3236 22 1 2.7452 1.3971 1.6200 23 1 7.6204 1.2310 1.3890 24 1 8.0523 2.9242 3.3399 25 1 3.8389 2.6035 2.9885 26 1 6.4543 0.0009 -0.0196 27 1 5.2887 -1.3985 -1.6264 28 1 4.3974 -0.3753 -3.1737 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239687860.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:55 Heat of formation + Delta-G solvation = 29.207309 kcal Electronic energy + Delta-G solvation = -15265.767338 eV Core-core repulsion = 12632.881246 eV Total energy + Delta-G solvation = -2632.886093 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.069 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.01187 -39.72373 -37.13802 -36.35189 -33.78067 -31.89765 -31.48293 -29.84121 -27.22454 -24.38866 -23.60210 -22.08247 -21.04304 -20.22716 -19.09923 -17.71310 -16.66374 -16.64474 -16.39259 -15.70911 -15.55152 -14.81528 -14.70151 -14.28605 -14.06825 -13.78251 -13.62743 -13.44419 -13.17240 -12.84402 -12.77641 -12.47940 -11.99758 -11.69409 -11.59282 -11.17151 -10.72926 -9.79770 -9.73204 -9.41697 -8.90807 -6.61899 0.27693 0.51124 1.16844 1.48710 1.51642 1.78428 1.89507 1.93575 2.22600 2.40315 2.41178 2.64087 3.44823 3.51500 3.98643 4.05770 4.19644 4.44556 4.49043 4.80176 4.81253 4.89049 5.04534 5.21658 5.38087 5.48810 5.54138 5.62898 5.77076 5.87294 6.02245 6.12240 6.40526 6.49586 6.61512 6.85381 7.78224 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031373 B = 0.006431 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.270898 B = 4352.958362 C = 5142.407796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C 0.303 3.697 3 C -0.208 4.208 4 C -0.003 4.003 5 C -0.164 4.164 6 C -0.125 4.125 7 C -0.237 4.237 8 C -0.029 4.029 9 O -0.193 6.193 10 C -0.070 4.070 11 C -0.034 4.034 12 C -0.226 4.226 13 C 0.112 3.888 14 C -0.502 4.502 15 H 0.070 0.930 16 C 0.011 3.989 17 N -0.773 5.773 18 Si 1.110 2.890 19 H -0.261 1.261 20 H -0.257 1.257 21 H -0.266 1.266 22 H 0.126 0.874 23 H 0.158 0.842 24 H 0.241 0.759 25 H 0.216 0.784 26 H 0.122 0.878 27 H 0.108 0.892 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.990 2.763 6.044 10.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.203 5.203 2 C -0.006 4.006 3 C -0.214 4.214 4 C -0.023 4.023 5 C -0.166 4.166 6 C -0.126 4.126 7 C -0.256 4.256 8 C -0.095 4.095 9 O -0.090 6.090 10 C -0.137 4.137 11 C -0.053 4.053 12 C -0.245 4.245 13 C 0.106 3.894 14 C -0.528 4.528 15 H 0.089 0.911 16 C -0.211 4.211 17 N -0.393 5.393 18 Si 0.927 3.073 19 H -0.185 1.185 20 H -0.181 1.181 21 H -0.191 1.191 22 H 0.144 0.856 23 H 0.175 0.825 24 H 0.257 0.743 25 H 0.232 0.768 26 H 0.140 0.860 27 H 0.126 0.874 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.588 2.089 4.942 8.496 hybrid contribution -0.077 0.824 0.986 1.287 sum 6.511 2.912 5.928 9.274 Atomic orbital electron populations 1.81010 1.13019 1.13355 1.12924 1.25898 0.92837 0.90997 0.90826 1.16861 0.83067 1.11210 1.10267 1.20791 0.93088 0.94077 0.94391 1.17400 0.91168 1.06039 1.01962 1.20470 0.93519 1.00197 0.98422 1.23071 0.94692 1.04764 1.03040 1.24535 0.89044 0.98941 0.97013 1.83793 1.14853 1.57863 1.52539 1.24318 0.93131 0.99634 0.96577 1.20663 0.99195 0.93042 0.92426 1.20754 0.93073 1.06219 1.04445 1.18758 0.92288 0.87980 0.90373 1.20907 1.03357 1.25529 1.03049 0.91138 1.28519 0.91498 1.05297 0.95777 1.70508 1.21792 1.09779 1.37230 0.83068 0.77406 0.70685 0.76181 1.18472 1.18128 1.19091 0.85644 0.82481 0.74317 0.76790 0.86022 0.87425 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.38 18.54 19.00 0.35 -25.03 15 2 C 0.30 14.36 14.30 88.33 1.26 15.63 15 3 C -0.21 -9.55 5.93 -19.64 -0.12 -9.66 15 4 C 0.00 -0.11 9.28 22.76 0.21 0.10 15 5 C -0.16 -6.29 5.88 -19.98 -0.12 -6.41 15 6 C -0.12 -4.09 6.23 -18.91 -0.12 -4.21 15 7 C -0.24 -6.45 10.50 23.61 0.25 -6.21 15 8 C -0.03 -0.65 12.04 66.92 0.81 0.16 15 9 O -0.19 -5.10 10.54 1.57 0.02 -5.08 15 10 C -0.07 -2.01 11.52 67.38 0.78 -1.23 15 11 C -0.03 -1.36 9.48 22.18 0.21 -1.15 15 12 C -0.23 -10.10 7.88 22.43 0.18 -9.92 15 13 C 0.11 5.41 5.46 -19.86 -0.11 5.30 15 14 C -0.50 -24.97 8.48 23.28 0.20 -24.77 15 15 H 0.07 3.62 7.45 -2.91 -0.02 3.60 15 16 C 0.01 0.52 4.94 85.35 0.42 0.94 15 17 N -0.77 -36.80 12.31 21.87 0.27 -36.54 15 18 Si 1.11 39.27 30.01 68.60 2.06 41.33 15 19 H -0.26 -8.84 7.11 99.48 0.71 -8.14 15 20 H -0.26 -8.56 7.11 99.48 0.71 -7.85 15 21 H -0.27 -9.13 7.11 99.48 0.71 -8.42 15 22 H 0.13 4.24 7.01 -2.91 -0.02 4.22 15 23 H 0.16 3.77 7.54 -2.91 -0.02 3.75 15 24 H 0.24 2.85 8.06 -2.91 -0.02 2.83 15 25 H 0.22 5.05 7.29 -2.91 -0.02 5.03 15 26 H 0.12 4.14 7.13 -2.91 -0.02 4.12 15 27 H 0.11 4.91 6.49 -2.91 -0.02 4.89 15 28 H 0.30 14.49 6.68 -92.71 -0.62 13.87 15 Total: -1.00 -56.77 262.28 7.90 -48.87 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 1.35 Total: 17.90 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 3.85 Total: -41.45 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 0.62 Total: -61.56 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: 0.02 Total: -5.08 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.06 Total: 41.33 kcal Total: -56.77 7.90 -48.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239687860.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.075 kcal (2) G-P(sol) polarization free energy of solvation -56.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds