Wall clock time and date at job start Sun Mar 29 2020 21:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39613 * 120.45168 * 187.66297 * 3 2 1 5 5 C 1.37679 * 120.18318 * 179.97438 * 4 3 2 6 6 C 1.39841 * 121.16930 * 0.04277 * 5 4 3 7 7 C 1.48300 * 119.53295 * 179.97438 * 6 5 4 8 8 C 1.46742 * 127.12627 * 0.02562 * 7 6 5 9 9 C 1.34343 * 106.02199 * 180.02562 * 8 7 6 10 10 O 1.34173 * 109.00794 * 359.97438 * 9 8 7 11 11 C 1.34042 * 110.76719 * 359.72933 * 10 9 8 12 12 C 1.38639 * 120.92880 * 359.95338 * 6 5 4 13 13 C 1.40561 * 119.73263 * 359.76216 * 12 6 5 14 14 C 1.40855 * 120.55508 * 180.25372 * 13 12 6 15 15 H 1.07995 * 119.99718 * 204.64984 * 14 13 12 16 16 C 1.40222 * 119.99549 * 24.64700 * 14 13 12 17 17 N 1.30660 * 120.00660 * 17.29612 * 16 14 13 18 18 Si 1.86801 * 119.99676 * 197.29445 * 16 14 13 19 19 H 1.48503 * 109.47389 * 89.99925 * 18 16 14 20 20 H 1.48500 * 109.47429 * 209.99808 * 18 16 14 21 21 H 1.48505 * 109.47194 * 330.00186 * 18 16 14 22 22 H 1.08001 * 119.91037 * 359.97438 * 4 3 2 23 23 H 1.08004 * 119.41687 * 180.02562 * 5 4 3 24 24 H 1.08004 * 126.99353 * 0.03205 * 8 7 6 25 25 H 1.07995 * 125.49943 * 180.02562 * 9 8 7 26 26 H 1.07995 * 125.77900 * 180.31193 * 11 10 9 27 27 H 1.08002 * 120.12982 * 180.02562 * 12 6 5 28 28 H 0.96999 * 120.00264 * 184.66463 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2751 1.1938 0.1605 5 6 4.6519 1.1879 0.1602 6 6 5.3706 -0.0009 -0.0002 7 6 6.8531 0.0348 0.0045 8 6 7.7101 1.2152 0.1642 9 6 8.9748 0.7663 0.1028 10 8 8.9584 -0.5632 -0.0769 11 6 7.6993 -1.0198 -0.1319 12 6 4.7166 -1.2125 -0.1631 13 6 3.3115 -1.2518 -0.1627 14 6 2.6294 -2.4739 -0.3215 15 1 1.6227 -2.4835 -0.7123 16 6 3.2575 -3.6779 0.0277 17 7 4.3122 -3.6650 0.7989 18 14 2.5865 -5.3006 -0.6096 19 1 3.2320 -5.6282 -1.9062 20 1 2.8756 -6.3759 0.3729 21 1 1.1183 -5.1876 -0.8022 22 1 2.7406 2.1239 0.2852 23 1 5.1863 2.1180 0.2857 24 1 7.3894 2.2372 0.3030 25 1 9.8617 1.3769 0.1856 26 1 7.4068 -2.0509 -0.2649 27 1 5.2845 -2.1230 -0.2855 28 1 4.7867 -4.4901 0.9856 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239688808.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:54 Heat of formation + Delta-G solvation = 48.359872 kcal Electronic energy + Delta-G solvation = -15394.072401 eV Core-core repulsion = 12762.016826 eV Total energy + Delta-G solvation = -2632.055575 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.069 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.87064 -37.73543 -35.18801 -34.22927 -32.63655 -30.22478 -29.97498 -28.13234 -25.78797 -23.02945 -21.75811 -20.38641 -19.73706 -17.94159 -17.26147 -16.70404 -15.49285 -15.40250 -14.58271 -14.00667 -13.64235 -13.24072 -12.85422 -12.68471 -12.50270 -11.96953 -11.92769 -11.74142 -11.53662 -11.26479 -11.19497 -11.05034 -10.66343 -10.05335 -9.75343 -9.62298 -9.27881 -8.47976 -7.78038 -7.26497 -7.01107 -4.73163 1.72014 2.32575 2.64231 2.92307 2.96841 2.97319 3.24157 3.49386 3.69946 3.92619 4.31631 4.45369 5.06705 5.35285 5.40632 5.47609 5.67267 5.96217 5.99973 6.19566 6.35119 6.52734 6.69855 6.78917 6.88130 6.97972 7.21031 7.44852 7.54785 7.66641 7.78992 7.88549 8.20357 8.42513 8.53224 8.83287 9.75037 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.019307 B = 0.008808 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.887219 B = 3178.227228 C = 4550.228726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.301 3.699 3 C -0.189 4.189 4 C -0.028 4.028 5 C -0.233 4.233 6 C 0.016 3.984 7 C -0.124 4.124 8 C -0.203 4.203 9 C -0.054 4.054 10 O -0.189 6.189 11 C -0.034 4.034 12 C -0.151 4.151 13 C 0.153 3.847 14 C -0.431 4.431 15 H 0.086 0.914 16 C 0.078 3.922 17 N -0.767 5.767 18 Si 0.913 3.087 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.258 1.258 22 H 0.100 0.900 23 H 0.098 0.902 24 H 0.147 0.853 25 H 0.196 0.804 26 H 0.205 0.795 27 H 0.127 0.873 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.424 2.037 -1.250 9.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.009 4.009 3 C -0.195 4.195 4 C -0.049 4.049 5 C -0.253 4.253 6 C 0.015 3.985 7 C -0.125 4.125 8 C -0.222 4.222 9 C -0.121 4.121 10 O -0.087 6.087 11 C -0.101 4.101 12 C -0.170 4.170 13 C 0.147 3.853 14 C -0.459 4.459 15 H 0.104 0.896 16 C -0.145 4.145 17 N -0.390 5.390 18 Si 0.736 3.264 19 H -0.186 1.186 20 H -0.198 1.198 21 H -0.181 1.181 22 H 0.118 0.882 23 H 0.116 0.884 24 H 0.165 0.835 25 H 0.213 0.787 26 H 0.222 0.778 27 H 0.145 0.855 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.044 1.698 -1.086 8.293 hybrid contribution 0.083 -0.535 -0.107 0.552 sum 8.127 1.162 -1.193 8.296 Atomic orbital electron populations 1.81015 1.12760 1.10192 1.15108 1.25805 0.92735 0.91191 0.91142 1.16986 0.83231 0.95286 1.23972 1.20375 0.93595 0.94936 0.96007 1.20066 0.92899 0.96182 1.16141 1.17888 0.87995 0.94031 0.98633 1.20606 0.94108 0.91973 1.05838 1.22864 0.92241 0.99552 1.07577 1.23727 0.99210 0.81778 1.07352 1.83807 1.30383 1.22912 1.71562 1.24207 0.79856 0.99741 1.06254 1.21269 0.93781 0.95693 1.06269 1.18317 0.91155 0.90045 0.85766 1.19774 1.01613 0.90230 1.34256 0.89635 1.26062 0.94422 1.01987 0.91985 1.69725 1.15350 1.31295 1.22624 0.86190 0.81027 0.79522 0.79676 1.18639 1.19778 1.18137 0.88217 0.88419 0.83516 0.78727 0.77797 0.85504 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.49 18.54 41.84 0.78 -11.71 15 2 C 0.30 7.16 14.28 -22.47 -0.32 6.84 15 3 C -0.19 -4.38 5.95 -104.10 -0.62 -5.00 15 4 C -0.03 -0.59 9.74 -39.27 -0.38 -0.97 15 5 C -0.23 -4.68 9.55 -39.19 -0.37 -5.05 15 6 C 0.02 0.33 5.86 -105.01 -0.62 -0.29 15 7 C -0.12 -2.28 6.23 -103.16 -0.64 -2.93 15 8 C -0.20 -3.12 10.50 -37.52 -0.39 -3.52 15 9 C -0.05 -0.72 12.04 29.36 0.35 -0.37 15 10 O -0.19 -2.93 10.55 6.75 0.07 -2.86 15 11 C -0.03 -0.57 11.50 29.89 0.34 -0.23 15 12 C -0.15 -3.43 8.21 -38.56 -0.32 -3.75 15 13 C 0.15 3.70 5.73 -104.68 -0.60 3.10 15 14 C -0.43 -10.54 8.58 -37.85 -0.32 -10.86 15 15 H 0.09 2.13 7.37 -52.49 -0.39 1.75 15 16 C 0.08 1.75 5.16 -17.30 -0.09 1.66 15 17 N -0.77 -17.28 10.94 55.56 0.61 -16.67 15 18 Si 0.91 17.13 29.60 -169.99 -5.03 12.09 15 19 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 20 H -0.27 -4.99 7.11 56.52 0.40 -4.58 15 21 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 22 H 0.10 1.81 8.06 -52.49 -0.42 1.39 15 23 H 0.10 1.72 7.14 -52.48 -0.37 1.35 15 24 H 0.15 1.97 7.54 -52.48 -0.40 1.58 15 25 H 0.20 1.71 8.06 -52.49 -0.42 1.29 15 26 H 0.21 3.15 7.28 -52.49 -0.38 2.76 15 27 H 0.13 2.84 5.12 -52.49 -0.27 2.57 15 28 H 0.29 5.83 8.30 -40.82 -0.34 5.49 15 LS Contribution 263.16 15.07 3.97 3.97 Total: -1.00 -26.56 263.16 -5.38 -31.94 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -1.79 Total: 4.61 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -3.98 Total: -21.37 kcal Atomic # 7 Polarization: -29.77 SS G_CDS: 1.38 Total: -28.39 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: 0.07 Total: -2.86 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -26.56 -5.38 -31.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239688808.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.303 kcal (2) G-P(sol) polarization free energy of solvation -26.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds