Wall clock time and date at job start Sun Mar 29 2020 21:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39613 * 120.45168 * 187.66297 * 3 2 1 5 5 C 1.37679 * 120.18318 * 179.97438 * 4 3 2 6 6 C 1.39841 * 121.16930 * 0.04277 * 5 4 3 7 7 C 1.48300 * 119.53295 * 179.97438 * 6 5 4 8 8 C 1.46742 * 127.12627 * 0.02562 * 7 6 5 9 9 C 1.34343 * 106.02199 * 180.02562 * 8 7 6 10 10 O 1.34173 * 109.00794 * 359.97438 * 9 8 7 11 11 C 1.34042 * 110.76719 * 359.72933 * 10 9 8 12 12 C 1.38639 * 120.92880 * 359.95338 * 6 5 4 13 13 C 1.40561 * 119.73263 * 359.76216 * 12 6 5 14 14 C 1.40855 * 120.55508 * 180.25372 * 13 12 6 15 15 H 1.07995 * 119.99718 * 204.64984 * 14 13 12 16 16 C 1.40222 * 119.99549 * 24.64700 * 14 13 12 17 17 N 1.30660 * 120.00660 * 17.29612 * 16 14 13 18 18 Si 1.86801 * 119.99676 * 197.29445 * 16 14 13 19 19 H 1.48503 * 109.47389 * 89.99925 * 18 16 14 20 20 H 1.48500 * 109.47429 * 209.99808 * 18 16 14 21 21 H 1.48505 * 109.47194 * 330.00186 * 18 16 14 22 22 H 1.08001 * 119.91037 * 359.97438 * 4 3 2 23 23 H 1.08004 * 119.41687 * 180.02562 * 5 4 3 24 24 H 1.08004 * 126.99353 * 0.03205 * 8 7 6 25 25 H 1.07995 * 125.49943 * 180.02562 * 9 8 7 26 26 H 1.07995 * 125.77900 * 180.31193 * 11 10 9 27 27 H 1.08002 * 120.12982 * 180.02562 * 12 6 5 28 28 H 0.96999 * 120.00264 * 184.66463 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2751 1.1938 0.1605 5 6 4.6519 1.1879 0.1602 6 6 5.3706 -0.0009 -0.0002 7 6 6.8531 0.0348 0.0045 8 6 7.7101 1.2152 0.1642 9 6 8.9748 0.7663 0.1028 10 8 8.9584 -0.5632 -0.0769 11 6 7.6993 -1.0198 -0.1319 12 6 4.7166 -1.2125 -0.1631 13 6 3.3115 -1.2518 -0.1627 14 6 2.6294 -2.4739 -0.3215 15 1 1.6227 -2.4835 -0.7123 16 6 3.2575 -3.6779 0.0277 17 7 4.3122 -3.6650 0.7989 18 14 2.5865 -5.3006 -0.6096 19 1 3.2320 -5.6282 -1.9062 20 1 2.8756 -6.3759 0.3729 21 1 1.1183 -5.1876 -0.8022 22 1 2.7406 2.1239 0.2852 23 1 5.1863 2.1180 0.2857 24 1 7.3894 2.2372 0.3030 25 1 9.8617 1.3769 0.1856 26 1 7.4068 -2.0509 -0.2649 27 1 5.2845 -2.1230 -0.2855 28 1 4.7867 -4.4901 0.9856 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239688808.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:53 Heat of formation + Delta-G solvation = 35.568586 kcal Electronic energy + Delta-G solvation = -15394.627073 eV Core-core repulsion = 12762.016826 eV Total energy + Delta-G solvation = -2632.610247 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.069 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.08800 -39.41990 -37.03528 -35.90777 -34.07493 -31.72143 -31.53364 -29.55180 -27.51634 -24.62131 -23.25334 -21.79626 -21.07177 -19.56920 -18.85924 -18.21359 -16.98830 -16.70277 -15.93140 -15.70410 -15.05204 -14.91418 -14.54433 -14.41224 -13.77650 -13.54179 -13.52112 -13.34896 -13.22599 -12.89384 -12.73152 -12.67354 -12.19131 -11.73523 -11.41756 -11.23440 -10.74719 -9.71847 -9.50415 -8.91240 -8.61492 -6.52959 0.09866 1.01023 1.12277 1.37212 1.47969 1.48674 1.75986 2.04143 2.14606 2.34944 2.58988 2.70165 3.62542 3.72125 3.95269 4.05109 4.40190 4.43438 4.78583 4.79954 4.90834 5.00182 5.13180 5.27764 5.34877 5.51890 5.64532 5.80441 5.93636 6.10674 6.14222 6.33747 6.50083 6.66569 6.79021 6.97680 8.09907 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.019307 B = 0.008808 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.887219 B = 3178.227228 C = 4550.228726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C 0.306 3.694 3 C -0.215 4.215 4 C -0.026 4.026 5 C -0.230 4.230 6 C 0.020 3.980 7 C -0.161 4.161 8 C -0.219 4.219 9 C -0.033 4.033 10 O -0.191 6.191 11 C -0.033 4.033 12 C -0.173 4.173 13 C 0.132 3.868 14 C -0.467 4.467 15 H 0.067 0.933 16 C 0.048 3.952 17 N -0.786 5.786 18 Si 0.975 3.025 19 H -0.251 1.251 20 H -0.260 1.260 21 H -0.272 1.272 22 H 0.127 0.873 23 H 0.129 0.871 24 H 0.166 0.834 25 H 0.246 0.754 26 H 0.208 0.792 27 H 0.123 0.877 28 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.638 2.745 -1.171 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.213 5.213 2 C -0.002 4.002 3 C -0.222 4.222 4 C -0.046 4.046 5 C -0.249 4.249 6 C 0.019 3.981 7 C -0.162 4.162 8 C -0.238 4.238 9 C -0.099 4.099 10 O -0.088 6.088 11 C -0.100 4.100 12 C -0.192 4.192 13 C 0.126 3.874 14 C -0.495 4.495 15 H 0.085 0.915 16 C -0.172 4.172 17 N -0.409 5.409 18 Si 0.796 3.204 19 H -0.175 1.175 20 H -0.184 1.184 21 H -0.196 1.196 22 H 0.145 0.855 23 H 0.146 0.854 24 H 0.184 0.816 25 H 0.262 0.738 26 H 0.225 0.775 27 H 0.141 0.859 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.276 2.420 -1.001 10.605 hybrid contribution -0.438 -0.643 -0.101 0.784 sum 9.838 1.778 -1.102 10.058 Atomic orbital electron populations 1.80987 1.13195 1.10855 1.16256 1.26020 0.92955 0.90640 0.90630 1.17236 0.82979 0.96202 1.25733 1.20687 0.94089 0.95055 0.94770 1.20453 0.92773 0.97133 1.14522 1.18204 0.89835 0.93621 0.96479 1.20707 0.93098 0.94215 1.08174 1.23112 0.92417 0.99617 1.08675 1.24656 1.00330 0.80819 1.04049 1.83841 1.29431 1.24275 1.71267 1.24313 0.80357 0.99883 1.05434 1.21259 0.93233 0.96559 1.08183 1.18622 0.92152 0.90467 0.86114 1.19842 1.01381 0.91758 1.36473 0.91489 1.26680 0.94611 1.04171 0.91759 1.69713 1.15880 1.32736 1.22590 0.85280 0.79364 0.76001 0.79777 1.17454 1.18350 1.19642 0.85547 0.85351 0.81610 0.73822 0.77502 0.85931 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.58 18.54 19.01 0.35 -26.22 15 2 C 0.31 14.91 14.28 88.33 1.26 16.17 15 3 C -0.22 -10.18 5.95 -19.53 -0.12 -10.29 15 4 C -0.03 -1.03 9.74 22.47 0.22 -0.81 15 5 C -0.23 -8.83 9.55 22.53 0.22 -8.62 15 6 C 0.02 0.82 5.86 -20.12 -0.12 0.70 15 7 C -0.16 -5.67 6.23 -18.92 -0.12 -5.78 15 8 C -0.22 -6.01 10.50 23.60 0.25 -5.77 15 9 C -0.03 -0.74 12.04 66.93 0.81 0.07 15 10 O -0.19 -5.36 10.55 1.25 0.01 -5.35 15 11 C -0.03 -1.06 11.50 67.28 0.77 -0.28 15 12 C -0.17 -8.02 8.21 22.93 0.19 -7.84 15 13 C 0.13 6.59 5.73 -19.90 -0.11 6.48 15 14 C -0.47 -23.77 8.58 23.39 0.20 -23.57 15 15 H 0.07 3.53 7.37 -2.91 -0.02 3.51 15 16 C 0.05 2.22 5.16 85.35 0.44 2.66 15 17 N -0.79 -35.85 10.94 21.87 0.24 -35.61 15 18 Si 0.98 35.45 29.60 68.60 2.03 37.48 15 19 H -0.25 -8.59 7.11 99.48 0.71 -7.88 15 20 H -0.26 -8.79 7.11 99.48 0.71 -8.08 15 21 H -0.27 -10.41 7.11 99.48 0.71 -9.71 15 22 H 0.13 4.34 8.06 -2.91 -0.02 4.32 15 23 H 0.13 4.10 7.14 -2.91 -0.02 4.08 15 24 H 0.17 3.79 7.54 -2.91 -0.02 3.76 15 25 H 0.25 2.82 8.06 -2.91 -0.02 2.80 15 26 H 0.21 6.35 7.28 -2.91 -0.02 6.33 15 27 H 0.12 5.65 5.12 -2.91 -0.01 5.64 15 28 H 0.30 12.08 8.30 -92.71 -0.77 11.31 15 Total: -1.00 -58.24 263.16 7.73 -50.52 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 1.20 Total: 16.08 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 3.89 Total: -36.89 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.59 Total: -61.84 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: 0.01 Total: -5.35 kcal Atomic # 14 Polarization: 35.45 SS G_CDS: 2.03 Total: 37.48 kcal Total: -58.24 7.73 -50.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239688808.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.084 kcal (2) G-P(sol) polarization free energy of solvation -58.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds