Wall clock time and date at job start Sun Mar 29 2020 22:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39604 * 120.45550 * 32.33483 * 3 2 1 5 5 C 1.37695 * 120.17681 * 179.97438 * 4 3 2 6 6 C 1.39809 * 121.17501 * 359.97438 * 5 4 3 7 7 C 1.48358 * 119.53249 * 180.02562 * 6 5 4 8 8 C 1.40898 * 126.23713 * 179.69101 * 7 6 5 9 9 N 1.30645 * 108.08422 * 179.81811 * 8 7 6 10 10 N 1.40008 * 108.54634 * 0.43869 * 9 8 7 11 11 H 0.96998 * 125.87905 * 179.69455 * 10 9 8 12 12 C 1.34761 * 108.24063 * 359.71990 * 10 9 8 13 13 C 1.38597 * 120.93475 * 0.02562 * 6 5 4 14 14 C 1.40577 * 119.73426 * 359.72797 * 13 6 5 15 15 C 1.40853 * 120.55182 * 180.28155 * 14 13 6 16 16 H 1.08003 * 119.99686 * 150.10178 * 15 14 13 17 17 C 1.40215 * 120.00398 * 330.09891 * 15 14 13 18 18 N 1.30661 * 120.00495 * 162.00934 * 17 15 14 19 19 Si 1.86802 * 120.00035 * 342.01286 * 17 15 14 20 20 H 1.48501 * 109.47474 * 95.40430 * 19 17 15 21 21 H 1.48498 * 109.47177 * 215.40982 * 19 17 15 22 22 H 1.48504 * 109.46999 * 335.40592 * 19 17 15 23 23 H 1.08001 * 119.91199 * 359.97438 * 4 3 2 24 24 H 1.08005 * 119.41261 * 179.97438 * 5 4 3 25 25 H 1.08000 * 125.96050 * 359.97438 * 8 7 6 26 26 H 1.07995 * 126.19619 * 179.97438 * 12 10 9 27 27 H 1.08000 * 120.13516 * 180.02562 * 13 6 5 28 28 H 0.97003 * 120.00562 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2761 -1.0159 -0.6437 5 6 4.6530 -1.0093 -0.6405 6 6 5.3704 0.0053 0.0002 7 6 6.8536 -0.0233 -0.0196 8 6 7.7129 0.9242 0.5713 9 7 8.9444 0.5531 0.3424 10 7 8.9213 -0.6301 -0.4058 11 1 9.6977 -1.1209 -0.7174 12 6 7.6346 -0.9693 -0.6188 13 6 4.7157 1.0374 0.6537 14 6 3.3105 1.0717 0.6702 15 6 2.6274 2.1157 1.3241 16 1 1.6579 2.4323 0.9689 17 6 3.2061 2.7439 2.4361 18 7 2.7700 3.9118 2.8272 19 14 4.6009 1.9110 3.3584 20 1 5.9016 2.4175 2.8515 21 1 4.4840 2.2106 4.8082 22 1 4.5257 0.4428 3.1488 23 1 2.7424 -1.8095 -1.1454 24 1 5.1883 -1.8020 -1.1420 25 1 7.4069 1.8025 1.1201 26 1 7.2847 -1.8328 -1.1649 27 1 5.2828 1.8147 1.1441 28 1 3.1706 4.3465 3.5963 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240241322.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:01 Heat of formation + Delta-G solvation = 111.257199 kcal Electronic energy + Delta-G solvation = -15512.516434 eV Core-core repulsion = 12915.481043 eV Total energy + Delta-G solvation = -2597.035391 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.93981 -37.83001 -35.20353 -34.02225 -31.95404 -31.19953 -30.53614 -28.10134 -25.70756 -22.74326 -22.29524 -20.77620 -19.91464 -17.88059 -17.57942 -17.29818 -15.25596 -14.59749 -14.44983 -14.14672 -13.97156 -13.49394 -13.05121 -12.76357 -12.65704 -12.22115 -11.96647 -11.62543 -11.48756 -11.19377 -10.99367 -10.71736 -10.39118 -10.08588 -9.86970 -9.53147 -9.37950 -8.94159 -7.89903 -7.25238 -7.15408 -4.78673 1.56402 2.17411 2.52258 2.91829 3.00533 3.04335 3.12827 3.23315 3.77820 3.88041 4.21207 4.44733 4.96746 5.04252 5.28316 5.33991 5.57823 5.70950 5.87981 5.99760 6.17056 6.40551 6.59868 6.73448 6.92996 7.04787 7.31528 7.37422 7.44108 7.59335 7.76825 7.83667 8.04296 8.32510 8.45267 8.77389 9.74740 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.010013 C = 0.007017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.268899 B = 2795.612739 C = 3989.327508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.297 3.703 3 C -0.175 4.175 4 C -0.013 4.013 5 C -0.248 4.248 6 C 0.058 3.942 7 C -0.183 4.183 8 C 0.064 3.936 9 N -0.304 5.304 10 N -0.482 5.482 11 H 0.436 0.564 12 C 0.064 3.936 13 C -0.226 4.226 14 C 0.131 3.869 15 C -0.418 4.418 16 H 0.097 0.903 17 C 0.083 3.917 18 N -0.778 5.778 19 Si 0.911 3.089 20 H -0.262 1.262 21 H -0.286 1.286 22 H -0.235 1.235 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.184 0.816 26 H 0.179 0.821 27 H 0.109 0.891 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.621 -6.922 -3.052 13.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.013 4.013 3 C -0.180 4.180 4 C -0.034 4.034 5 C -0.268 4.268 6 C 0.056 3.944 7 C -0.195 4.195 8 C -0.123 4.123 9 N -0.126 5.126 10 N -0.189 5.189 11 H 0.279 0.721 12 C -0.083 4.083 13 C -0.246 4.246 14 C 0.126 3.874 15 C -0.444 4.444 16 H 0.115 0.885 17 C -0.140 4.140 18 N -0.400 5.400 19 Si 0.735 3.265 20 H -0.188 1.188 21 H -0.213 1.213 22 H -0.158 1.158 23 H 0.122 0.878 24 H 0.118 0.882 25 H 0.201 0.799 26 H 0.196 0.804 27 H 0.127 0.873 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.023 -6.371 -2.703 13.016 hybrid contribution 0.485 -0.502 0.181 0.722 sum 11.509 -6.874 -2.521 13.640 Atomic orbital electron populations 1.81033 1.12720 1.10958 1.13307 1.25717 0.92672 0.91542 0.91355 1.16894 0.83345 1.00820 1.16990 1.20467 0.93627 0.94880 0.94440 1.20018 0.93015 1.02007 1.11751 1.17736 0.87998 0.93833 0.94807 1.19304 0.94366 0.97892 1.07897 1.24129 0.89437 0.99810 0.98886 1.77157 1.21785 0.98908 1.14737 1.46152 1.06943 1.21390 1.44406 0.72053 1.22622 0.84227 1.00517 1.00960 1.20872 0.93575 1.01055 1.09058 1.18351 0.90680 0.89085 0.89327 1.19649 1.05214 1.10229 1.09351 0.88540 1.26369 0.97195 0.93279 0.97185 1.69601 1.37021 1.11535 1.21795 0.86312 0.79724 0.83165 0.77263 1.18822 1.21296 1.15793 0.87783 0.88153 0.79912 0.80366 0.87329 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.06 18.54 41.84 0.78 -11.28 15 2 C 0.30 6.85 14.36 -22.47 -0.32 6.53 15 3 C -0.17 -3.82 5.95 -104.11 -0.62 -4.44 15 4 C -0.01 -0.25 9.74 -39.27 -0.38 -0.63 15 5 C -0.25 -4.30 9.50 -39.19 -0.37 -4.67 15 6 C 0.06 1.09 5.86 -105.01 -0.62 0.48 15 7 C -0.18 -2.99 6.03 -105.34 -0.64 -3.63 15 8 C 0.06 1.05 11.39 -17.05 -0.19 0.86 15 9 N -0.30 -4.66 12.67 30.81 0.39 -4.27 15 10 N -0.48 -5.70 7.33 30.64 0.22 -5.48 15 11 H 0.44 3.38 8.96 -182.67 -1.64 1.74 15 12 C 0.06 0.81 11.36 -16.88 -0.19 0.61 15 13 C -0.23 -4.77 6.69 -38.57 -0.26 -5.03 15 14 C 0.13 3.04 5.26 -104.68 -0.55 2.49 15 15 C -0.42 -10.55 9.02 -37.85 -0.34 -10.89 15 16 H 0.10 2.66 7.66 -52.48 -0.40 2.26 15 17 C 0.08 2.01 5.41 -17.31 -0.09 1.92 15 18 N -0.78 -19.21 13.92 55.56 0.77 -18.44 15 19 Si 0.91 18.75 24.53 -169.99 -4.17 14.58 15 20 H -0.26 -4.98 6.63 56.52 0.37 -4.61 15 21 H -0.29 -5.76 7.11 56.52 0.40 -5.36 15 22 H -0.24 -4.97 6.85 56.52 0.39 -4.58 15 23 H 0.10 1.66 8.06 -52.49 -0.42 1.23 15 24 H 0.10 1.40 6.90 -52.48 -0.36 1.04 15 25 H 0.18 2.88 7.20 -52.49 -0.38 2.51 15 26 H 0.18 1.61 7.21 -52.49 -0.38 1.23 15 27 H 0.11 2.24 3.66 -52.49 -0.19 2.05 15 28 H 0.29 6.45 8.29 -40.82 -0.34 6.11 15 LS Contribution 256.09 15.07 3.86 3.86 Total: -1.00 -28.11 256.09 -5.67 -33.79 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -2.95 Total: 3.64 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -4.58 Total: -16.40 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 2.16 Total: -39.46 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.17 Total: 14.58 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.11 -5.67 -33.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240241322.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.043 kcal (2) G-P(sol) polarization free energy of solvation -28.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds