Wall clock time and date at job start Sun Mar 29 2020 22:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39604 * 120.45550 * 32.33483 * 3 2 1 5 5 C 1.37695 * 120.17681 * 179.97438 * 4 3 2 6 6 C 1.39809 * 121.17501 * 359.97438 * 5 4 3 7 7 C 1.48358 * 119.53249 * 180.02562 * 6 5 4 8 8 C 1.40898 * 126.23713 * 179.69101 * 7 6 5 9 9 N 1.30645 * 108.08422 * 179.81811 * 8 7 6 10 10 N 1.40008 * 108.54634 * 0.43869 * 9 8 7 11 11 H 0.96998 * 125.87905 * 179.69455 * 10 9 8 12 12 C 1.34761 * 108.24063 * 359.71990 * 10 9 8 13 13 C 1.38597 * 120.93475 * 0.02562 * 6 5 4 14 14 C 1.40577 * 119.73426 * 359.72797 * 13 6 5 15 15 C 1.40853 * 120.55182 * 180.28155 * 14 13 6 16 16 H 1.08003 * 119.99686 * 150.10178 * 15 14 13 17 17 C 1.40215 * 120.00398 * 330.09891 * 15 14 13 18 18 N 1.30661 * 120.00495 * 162.00934 * 17 15 14 19 19 Si 1.86802 * 120.00035 * 342.01286 * 17 15 14 20 20 H 1.48501 * 109.47474 * 95.40430 * 19 17 15 21 21 H 1.48498 * 109.47177 * 215.40982 * 19 17 15 22 22 H 1.48504 * 109.46999 * 335.40592 * 19 17 15 23 23 H 1.08001 * 119.91199 * 359.97438 * 4 3 2 24 24 H 1.08005 * 119.41261 * 179.97438 * 5 4 3 25 25 H 1.08000 * 125.96050 * 359.97438 * 8 7 6 26 26 H 1.07995 * 126.19619 * 179.97438 * 12 10 9 27 27 H 1.08000 * 120.13516 * 180.02562 * 13 6 5 28 28 H 0.97003 * 120.00562 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2761 -1.0159 -0.6437 5 6 4.6530 -1.0093 -0.6405 6 6 5.3704 0.0053 0.0002 7 6 6.8536 -0.0233 -0.0196 8 6 7.7129 0.9242 0.5713 9 7 8.9444 0.5531 0.3424 10 7 8.9213 -0.6301 -0.4058 11 1 9.6977 -1.1209 -0.7174 12 6 7.6346 -0.9693 -0.6188 13 6 4.7157 1.0374 0.6537 14 6 3.3105 1.0717 0.6702 15 6 2.6274 2.1157 1.3241 16 1 1.6579 2.4323 0.9689 17 6 3.2061 2.7439 2.4361 18 7 2.7700 3.9118 2.8272 19 14 4.6009 1.9110 3.3584 20 1 5.9016 2.4175 2.8515 21 1 4.4840 2.2106 4.8082 22 1 4.5257 0.4428 3.1488 23 1 2.7424 -1.8095 -1.1454 24 1 5.1883 -1.8020 -1.1420 25 1 7.4069 1.8025 1.1201 26 1 7.2847 -1.8328 -1.1649 27 1 5.2828 1.8147 1.1441 28 1 3.1706 4.3465 3.5963 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240241322.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:01 Heat of formation + Delta-G solvation = 93.114968 kcal Electronic energy + Delta-G solvation = -15513.303140 eV Core-core repulsion = 12915.481043 eV Total energy + Delta-G solvation = -2597.822097 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.04995 -39.42473 -37.01030 -35.73124 -33.32654 -32.57804 -31.96146 -29.43708 -27.39193 -24.21921 -23.64877 -22.14690 -21.19635 -19.41387 -19.00094 -18.78882 -16.89753 -16.05169 -15.58473 -15.53957 -15.41156 -14.96167 -14.68687 -14.47259 -14.09866 -13.67189 -13.65081 -13.24938 -13.15678 -12.83425 -12.59780 -12.20684 -11.84703 -11.62164 -11.48187 -10.99379 -10.61432 -10.31066 -9.52944 -9.00858 -8.55569 -6.61073 0.09101 0.92783 1.03922 1.29795 1.41967 1.53389 1.75828 2.04645 2.08959 2.12359 2.59006 2.69165 3.61313 3.61778 3.79727 4.11757 4.27222 4.42888 4.65395 4.77011 4.81842 4.85232 5.09220 5.26446 5.41790 5.55708 5.79473 5.83114 6.03012 6.12595 6.31421 6.48642 6.59581 6.69100 6.74298 6.96982 8.06203 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.010013 C = 0.007017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.268899 B = 2795.612739 C = 3989.327508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C 0.303 3.697 3 C -0.197 4.197 4 C -0.008 4.008 5 C -0.222 4.222 6 C 0.071 3.929 7 C -0.228 4.228 8 C 0.051 3.949 9 N -0.325 5.325 10 N -0.461 5.461 11 H 0.457 0.543 12 C 0.106 3.894 13 C -0.246 4.246 14 C 0.124 3.876 15 C -0.465 4.465 16 H 0.049 0.951 17 C 0.051 3.949 18 N -0.829 5.829 19 Si 0.960 3.040 20 H -0.239 1.239 21 H -0.281 1.281 22 H -0.242 1.242 23 H 0.139 0.861 24 H 0.154 0.846 25 H 0.176 0.824 26 H 0.228 0.772 27 H 0.106 0.894 28 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.107 -10.469 -4.672 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.211 5.211 2 C -0.006 4.006 3 C -0.203 4.203 4 C -0.029 4.029 5 C -0.242 4.242 6 C 0.069 3.931 7 C -0.239 4.239 8 C -0.136 4.136 9 N -0.148 5.148 10 N -0.170 5.170 11 H 0.304 0.696 12 C -0.043 4.043 13 C -0.265 4.265 14 C 0.119 3.881 15 C -0.493 4.493 16 H 0.067 0.933 17 C -0.167 4.167 18 N -0.453 5.453 19 Si 0.781 3.219 20 H -0.164 1.164 21 H -0.207 1.207 22 H -0.165 1.165 23 H 0.156 0.844 24 H 0.172 0.828 25 H 0.193 0.807 26 H 0.244 0.756 27 H 0.124 0.876 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.550 -9.919 -4.339 18.136 hybrid contribution -0.412 0.350 0.444 0.699 sum 14.138 -9.569 -3.895 17.511 Atomic orbital electron populations 1.81006 1.13578 1.12005 1.14517 1.26113 0.93148 0.90744 0.90626 1.17242 0.82760 1.02087 1.18258 1.20884 0.94449 0.94269 0.93276 1.20640 0.92541 1.01872 1.09102 1.18043 0.89796 0.92675 0.92597 1.19239 0.93134 1.00187 1.11389 1.24151 0.90043 1.00095 0.99295 1.77138 1.21303 1.00492 1.15839 1.46237 1.07964 1.20170 1.42588 0.69551 1.23223 0.83492 0.99784 0.97849 1.20917 0.92523 1.02558 1.10546 1.18487 0.91886 0.88688 0.89010 1.19500 1.04355 1.13408 1.12072 0.93271 1.27027 0.99071 0.93425 0.97171 1.69636 1.39376 1.12980 1.23288 0.85580 0.78268 0.81672 0.76373 1.16354 1.20731 1.16479 0.84361 0.82825 0.80721 0.75575 0.87589 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.36 18.54 19.00 0.35 -26.01 15 2 C 0.30 14.28 14.36 88.33 1.27 15.55 15 3 C -0.20 -8.55 5.95 -19.53 -0.12 -8.67 15 4 C -0.01 -0.28 9.74 22.47 0.22 -0.06 15 5 C -0.22 -6.41 9.50 22.52 0.21 -6.20 15 6 C 0.07 2.39 5.86 -20.12 -0.12 2.27 15 7 C -0.23 -6.40 6.03 -20.33 -0.12 -6.53 15 8 C 0.05 1.51 11.39 85.52 0.97 2.49 15 9 N -0.33 -8.81 12.67 -56.44 -0.71 -9.53 15 10 N -0.46 -8.30 7.33 -56.97 -0.42 -8.71 15 11 H 0.46 4.32 8.96 -213.38 -1.91 2.41 15 12 C 0.11 1.94 11.36 83.84 0.95 2.89 15 13 C -0.25 -10.18 6.69 22.93 0.15 -10.03 15 14 C 0.12 5.90 5.26 -19.90 -0.10 5.79 15 15 C -0.47 -25.24 9.02 23.39 0.21 -25.03 15 16 H 0.05 3.01 7.66 -2.91 -0.02 2.99 15 17 C 0.05 2.62 5.41 85.35 0.46 3.08 15 18 N -0.83 -43.87 13.92 21.87 0.30 -43.57 15 19 Si 0.96 39.48 24.53 68.60 1.68 41.16 15 20 H -0.24 -8.78 6.63 99.48 0.66 -8.12 15 21 H -0.28 -11.10 7.11 99.48 0.71 -10.39 15 22 H -0.24 -10.03 6.85 99.48 0.68 -9.35 15 23 H 0.14 3.67 8.06 -2.91 -0.02 3.65 15 24 H 0.15 2.87 6.90 -2.91 -0.02 2.85 15 25 H 0.18 5.33 7.20 -2.91 -0.02 5.31 15 26 H 0.23 1.88 7.21 -2.91 -0.02 1.86 15 27 H 0.11 4.38 3.66 -2.91 -0.01 4.37 15 28 H 0.30 14.10 8.29 -92.71 -0.77 13.33 15 Total: -1.00 -66.62 256.09 4.45 -62.17 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -0.75 Total: 8.91 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 3.99 Total: -24.43 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -0.48 Total: -87.82 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.68 Total: 41.16 kcal Total: -66.62 4.45 -62.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240241322.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.289 kcal (2) G-P(sol) polarization free energy of solvation -66.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds