Wall clock time and date at job start Sun Mar 29 2020 22:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.38963 * 120.55234 * 53.25526 * 3 2 1 5 5 C 1.39660 * 119.78213 * 179.97438 * 4 3 2 6 6 C 1.47360 * 119.52196 * 180.02562 * 5 4 3 7 7 N 1.31767 * 125.85239 * 359.97438 * 6 5 4 8 8 C 1.33455 * 109.25062 * 180.02562 * 7 6 5 9 9 C 1.35308 * 108.41411 * 0.02562 * 8 7 6 10 10 N 1.36647 * 107.05300 * 0.02562 * 9 8 7 11 11 H 0.96999 * 126.50691 * 179.97438 * 10 9 8 12 12 C 1.40246 * 120.95261 * 0.27747 * 5 4 3 13 13 C 1.35878 * 121.16162 * 359.42920 * 12 5 4 14 14 C 1.41109 * 120.13775 * 0.56557 * 13 12 5 15 15 C 1.40318 * 120.46742 * 179.74091 * 14 13 12 16 16 H 1.08006 * 119.99830 * 154.44098 * 15 14 13 17 17 C 1.40287 * 119.99795 * 334.44332 * 15 14 13 18 18 N 1.30640 * 120.00134 * 343.15882 * 17 15 14 19 19 Si 1.86794 * 119.99881 * 163.16277 * 17 15 14 20 20 H 1.48500 * 109.47571 * 89.99896 * 19 17 15 21 21 H 1.48499 * 109.47349 * 209.99920 * 19 17 15 22 22 H 1.48508 * 109.47322 * 329.99755 * 19 17 15 23 23 H 1.08001 * 120.10637 * 359.95755 * 4 3 2 24 24 H 1.07992 * 125.79672 * 179.97438 * 8 7 6 25 25 H 1.07996 * 126.46905 * 180.26399 * 9 8 7 26 26 H 1.07995 * 119.41505 * 179.72428 * 12 5 4 27 27 H 1.08003 * 119.92882 * 180.26337 * 13 12 5 28 28 H 0.96996 * 120.00317 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2747 -0.7150 -0.9589 5 6 4.6712 -0.7027 -0.9442 6 6 5.4148 -1.4631 -1.9641 7 7 4.8822 -2.1846 -2.9295 8 6 5.8568 -2.7296 -3.6604 9 6 7.0460 -2.3431 -3.1434 10 7 6.7749 -1.5426 -2.0697 11 1 7.4246 -1.1119 -1.4923 12 6 5.3759 0.0187 0.0304 13 6 4.7241 0.7364 0.9824 14 6 3.3134 0.7572 1.0120 15 6 2.6332 1.4916 1.9952 16 1 1.6330 1.8521 1.8047 17 6 3.2522 1.7576 3.2257 18 7 4.2990 1.0676 3.5930 19 14 2.5796 3.0983 4.3390 20 1 1.5663 2.5180 5.2564 21 1 3.6887 3.6845 5.1337 22 1 1.9491 4.1585 3.5120 23 1 2.7457 -1.2790 -1.7129 24 1 5.7197 -3.3710 -4.5184 25 1 8.0244 -2.6129 -3.5123 26 1 6.4558 0.0073 0.0212 27 1 5.2868 1.2881 1.7209 28 1 4.7268 1.2513 4.4440 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242015910.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:06 Heat of formation + Delta-G solvation = 90.815607 kcal Electronic energy + Delta-G solvation = -15276.404980 eV Core-core repulsion = 12678.483175 eV Total energy + Delta-G solvation = -2597.921805 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.27546 -37.75838 -35.15647 -34.34140 -32.05047 -30.98083 -29.95779 -28.34883 -25.65110 -22.51548 -22.02545 -20.91124 -19.78636 -18.35546 -17.71303 -16.29418 -15.65754 -14.41596 -14.40805 -14.23254 -13.60596 -13.27395 -13.14445 -12.90046 -12.70894 -12.10372 -11.88859 -11.69431 -11.40741 -11.35166 -11.04600 -10.82422 -10.16154 -9.95971 -9.70526 -9.56772 -9.46667 -8.51384 -7.87224 -7.39826 -7.20286 -4.84561 1.90818 2.24766 2.70800 2.82650 2.87835 3.01348 3.56558 3.57928 3.68878 3.90081 4.25604 4.36865 5.12343 5.28779 5.36004 5.50807 5.80759 5.92119 5.99544 6.09591 6.51941 6.53840 6.65989 6.87295 7.09538 7.20318 7.29047 7.51793 7.62864 7.71253 7.89992 8.04764 8.24751 8.39788 8.66622 8.78581 9.54661 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.031902 B = 0.006520 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.470954 B = 4293.263009 C = 5096.420851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.301 3.699 3 C -0.188 4.188 4 C 0.032 3.968 5 C -0.182 4.182 6 C 0.306 3.694 7 N -0.511 5.511 8 C -0.025 4.025 9 C -0.090 4.090 10 N -0.577 5.577 11 H 0.415 0.585 12 C -0.058 4.058 13 C -0.163 4.163 14 C 0.156 3.844 15 C -0.411 4.411 16 H 0.091 0.909 17 C 0.074 3.926 18 N -0.751 5.751 19 Si 0.918 3.082 20 H -0.262 1.262 21 H -0.269 1.269 22 H -0.253 1.253 23 H 0.115 0.885 24 H 0.161 0.839 25 H 0.167 0.833 26 H 0.088 0.912 27 H 0.128 0.872 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.516 -0.083 -2.319 8.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.009 4.009 3 C -0.194 4.194 4 C 0.009 3.991 5 C -0.186 4.186 6 C 0.047 3.953 7 N -0.231 5.231 8 C -0.175 4.175 9 C -0.223 4.223 10 N -0.180 5.180 11 H 0.252 0.748 12 C -0.079 4.079 13 C -0.182 4.182 14 C 0.150 3.850 15 C -0.437 4.437 16 H 0.109 0.891 17 C -0.151 4.151 18 N -0.372 5.372 19 Si 0.740 3.260 20 H -0.187 1.187 21 H -0.194 1.194 22 H -0.177 1.177 23 H 0.133 0.867 24 H 0.178 0.822 25 H 0.184 0.816 26 H 0.107 0.893 27 H 0.146 0.854 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.119 -0.298 -2.338 6.557 hybrid contribution 1.687 0.652 0.892 2.017 sum 7.806 0.355 -1.447 7.946 Atomic orbital electron populations 1.81031 1.12632 1.12832 1.11775 1.25652 0.92584 0.91402 0.91241 1.16734 0.83450 1.12537 1.06711 1.20533 0.92089 0.92570 0.93907 1.16640 0.91628 1.10677 0.99704 1.21728 0.79168 0.98068 0.96323 1.70442 1.31962 1.13834 1.06825 1.22224 0.88495 1.04600 1.02183 1.22564 1.00656 1.04174 0.94900 1.43382 1.08611 1.40198 1.25784 0.74765 1.20263 0.97084 0.96306 0.94244 1.20804 0.93734 1.03780 0.99886 1.18503 0.91569 0.86337 0.88585 1.19875 1.01911 1.25039 0.96922 0.89122 1.26215 0.93897 0.95992 0.99013 1.69701 1.15556 1.31261 1.20710 0.86099 0.79814 0.80548 0.79496 1.18711 1.19350 1.17686 0.86702 0.82211 0.81612 0.89344 0.85445 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.14 18.54 41.84 0.78 -11.36 15 2 C 0.30 7.07 14.29 -22.47 -0.32 6.75 15 3 C -0.19 -4.29 5.93 -104.29 -0.62 -4.91 15 4 C 0.03 0.69 9.38 -38.78 -0.36 0.33 15 5 C -0.18 -3.71 5.88 -104.90 -0.62 -4.33 15 6 C 0.31 5.83 7.74 -154.43 -1.20 4.64 15 7 N -0.51 -10.09 10.81 -11.23 -0.12 -10.21 15 8 C -0.03 -0.40 11.85 -17.89 -0.21 -0.62 15 9 C -0.09 -1.24 12.04 -16.45 -0.20 -1.44 15 10 N -0.58 -8.74 6.06 -10.54 -0.06 -8.80 15 11 H 0.41 5.05 7.99 -40.82 -0.33 4.73 15 12 C -0.06 -1.14 9.55 -39.67 -0.38 -1.51 15 13 C -0.16 -3.50 8.62 -39.34 -0.34 -3.84 15 14 C 0.16 3.62 5.73 -104.61 -0.60 3.02 15 15 C -0.41 -9.54 8.54 -38.03 -0.32 -9.86 15 16 H 0.09 2.13 7.38 -52.48 -0.39 1.74 15 17 C 0.07 1.57 5.16 -17.29 -0.09 1.48 15 18 N -0.75 -16.11 10.96 55.57 0.61 -15.50 15 19 Si 0.92 16.16 29.59 -169.99 -5.03 11.13 15 20 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 21 H -0.27 -4.52 7.11 56.52 0.40 -4.12 15 22 H -0.25 -4.52 7.11 56.52 0.40 -4.12 15 23 H 0.11 2.43 7.79 -52.49 -0.41 2.02 15 24 H 0.16 2.07 8.06 -52.49 -0.42 1.65 15 25 H 0.17 1.61 8.06 -52.49 -0.42 1.19 15 26 H 0.09 1.43 7.06 -52.49 -0.37 1.06 15 27 H 0.13 2.73 6.20 -52.48 -0.33 2.41 15 28 H 0.29 5.60 8.29 -40.82 -0.34 5.26 15 LS Contribution 262.82 15.07 3.96 3.96 Total: -1.00 -26.61 262.82 -6.93 -33.54 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -1.80 Total: 7.53 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -5.26 Total: -10.28 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 1.20 Total: -45.88 kcal Atomic # 14 Polarization: 16.16 SS G_CDS: -5.03 Total: 11.13 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -26.61 -6.93 -33.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242015910.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.354 kcal (2) G-P(sol) polarization free energy of solvation -26.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds